HEADER TRANSCRIPTION/DNA 25-MAR-19 6OD5 TITLE HUMAN TCF4 C-TERMINAL BHLH DOMAIN IN COMPLEX WITH 12-BP TITLE 2 OLIGONUCLEOTIDE CONTAINING E-BOX SEQUENCE WITH 5-CARBOXYLCYTOSINES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR 4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C-TERMINAL BHLH DOMAIN (UNP RESIDUES 405-464); COMPND 5 SYNONYM: TCF-4, CLASS B BASIC HELIX-LOOP-HELIX PROTEIN 19, BHLHB19, COMPND 6 IMMUNOGLOBULIN TRANSCRIPTION FACTOR 2, ITF-2, SL3-3 ENHANCER FACTOR COMPND 7 2, SEF-2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*AP*(1CC)P*GP*CP*AP*CP*GP*TP*GP*(1CC)P*G)-3'); COMPND 11 CHAIN: X, Y, E, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TCF4, BHLHB19, ITF2, SEF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODON PLUS(DE3)-RIL; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION FACTOR, BHTH, E-BOX, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG,J.YANG REVDAT 4 11-OCT-23 6OD5 1 REMARK REVDAT 3 01-JAN-20 6OD5 1 REMARK REVDAT 2 30-OCT-19 6OD5 1 JRNL REVDAT 1 29-MAY-19 6OD5 0 JRNL AUTH J.YANG,J.R.HORTON,J.LI,Y.HUANG,X.ZHANG,R.M.BLUMENTHAL, JRNL AUTH 2 X.CHENG JRNL TITL STRUCTURAL BASIS FOR PREFERENTIAL BINDING OF HUMAN TCF4 TO JRNL TITL 2 DNA CONTAINING 5-CARBOXYLCYTOSINE. JRNL REF NUCLEIC ACIDS RES. V. 47 8375 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31081034 JRNL DOI 10.1093/NAR/GKZ381 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 24247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6671 - 4.2623 0.99 2636 135 0.2023 0.2410 REMARK 3 2 4.2623 - 3.3839 1.00 2675 141 0.1967 0.2734 REMARK 3 3 3.3839 - 2.9564 0.99 2633 142 0.2398 0.3017 REMARK 3 4 2.9564 - 2.6861 0.99 2663 138 0.2613 0.2838 REMARK 3 5 2.6861 - 2.4937 0.99 2604 138 0.2610 0.2453 REMARK 3 6 2.4937 - 2.3467 0.99 2659 141 0.2563 0.3038 REMARK 3 7 2.3467 - 2.2292 0.97 2600 135 0.2694 0.3258 REMARK 3 8 2.2292 - 2.1321 0.91 2407 124 0.2862 0.3223 REMARK 3 9 2.1321 - 2.0501 0.80 2155 121 0.2977 0.3208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3045 REMARK 3 ANGLE : 0.552 4284 REMARK 3 CHIRALITY : 0.025 487 REMARK 3 PLANARITY : 0.002 392 REMARK 3 DIHEDRAL : 20.079 1665 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 567 THROUGH 599 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9274 -8.9274 31.9508 REMARK 3 T TENSOR REMARK 3 T11: 0.2183 T22: 0.2086 REMARK 3 T33: 0.2084 T12: -0.0197 REMARK 3 T13: -0.0904 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 8.5376 L22: 5.3995 REMARK 3 L33: 3.9956 L12: -5.5811 REMARK 3 L13: -2.9223 L23: 2.4191 REMARK 3 S TENSOR REMARK 3 S11: -0.4637 S12: -0.6920 S13: 0.5537 REMARK 3 S21: 0.3754 S22: 0.5768 S23: -0.4316 REMARK 3 S31: -0.1084 S32: 0.4052 S33: -0.1413 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 600 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4318 -13.6471 17.1023 REMARK 3 T TENSOR REMARK 3 T11: 0.3092 T22: 0.7906 REMARK 3 T33: 0.3341 T12: 0.0140 REMARK 3 T13: -0.0193 T23: -0.0894 REMARK 3 L TENSOR REMARK 3 L11: 4.0409 L22: 8.6422 REMARK 3 L33: 0.9382 L12: -5.8801 REMARK 3 L13: 0.9634 L23: -1.2321 REMARK 3 S TENSOR REMARK 3 S11: 0.9462 S12: 1.0974 S13: 0.6903 REMARK 3 S21: -0.0962 S22: -0.5762 S23: -0.8092 REMARK 3 S31: -0.0342 S32: 1.5756 S33: -0.1858 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 607 THROUGH 628 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5448 -28.2542 22.0001 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.2431 REMARK 3 T33: 0.1380 T12: 0.0574 REMARK 3 T13: -0.0027 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 6.4951 L22: 9.0048 REMARK 3 L33: 4.4215 L12: -4.0310 REMARK 3 L13: 0.4219 L23: -1.4634 REMARK 3 S TENSOR REMARK 3 S11: 0.3563 S12: 0.3838 S13: -0.4466 REMARK 3 S21: -0.2646 S22: -0.5067 S23: -0.0010 REMARK 3 S31: 0.6083 S32: 0.5499 S33: 0.0940 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 568 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2477 -18.3597 22.2166 REMARK 3 T TENSOR REMARK 3 T11: 0.2216 T22: 0.2086 REMARK 3 T33: 0.1549 T12: 0.0360 REMARK 3 T13: -0.0049 T23: -0.0867 REMARK 3 L TENSOR REMARK 3 L11: 3.4586 L22: 7.1397 REMARK 3 L33: 6.7279 L12: -3.2514 REMARK 3 L13: 2.9956 L23: -6.5596 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.1215 S13: -0.1407 REMARK 3 S21: -0.0287 S22: -0.0997 S23: 0.1366 REMARK 3 S31: 0.1334 S32: -0.0809 S33: 0.0704 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 607 THROUGH 627 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3431 -25.8561 31.8051 REMARK 3 T TENSOR REMARK 3 T11: 0.2266 T22: 0.3468 REMARK 3 T33: 0.1726 T12: 0.0841 REMARK 3 T13: -0.0056 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 3.9564 L22: 7.4739 REMARK 3 L33: 2.5287 L12: -3.3049 REMARK 3 L13: -1.9562 L23: 1.8320 REMARK 3 S TENSOR REMARK 3 S11: -0.2764 S12: -0.3636 S13: 0.2325 REMARK 3 S21: 0.4810 S22: 0.0952 S23: -0.5973 REMARK 3 S31: 0.2446 S32: 0.3994 S33: 0.2187 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4525 -4.4141 25.0128 REMARK 3 T TENSOR REMARK 3 T11: 0.1876 T22: 0.2532 REMARK 3 T33: 0.3018 T12: 0.0165 REMARK 3 T13: 0.0355 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 5.0443 L22: 0.8774 REMARK 3 L33: 2.1767 L12: 0.3250 REMARK 3 L13: -1.2060 L23: 0.8072 REMARK 3 S TENSOR REMARK 3 S11: 0.1017 S12: -0.0092 S13: 0.6581 REMARK 3 S21: 0.0063 S22: 0.1270 S23: -0.0447 REMARK 3 S31: -0.0702 S32: 0.4228 S33: -0.2566 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'Y' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5433 -5.2204 24.3669 REMARK 3 T TENSOR REMARK 3 T11: 0.2035 T22: 0.2135 REMARK 3 T33: 0.1976 T12: -0.0354 REMARK 3 T13: -0.0096 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 3.2881 L22: 5.1498 REMARK 3 L33: 4.2621 L12: 2.0615 REMARK 3 L13: -0.2370 L23: -2.9903 REMARK 3 S TENSOR REMARK 3 S11: -0.2150 S12: 0.3183 S13: 0.2383 REMARK 3 S21: -0.5492 S22: 0.2882 S23: 0.1123 REMARK 3 S31: 0.3036 S32: -0.1964 S33: 0.0685 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 569 THROUGH 598 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1560 6.0696 5.2580 REMARK 3 T TENSOR REMARK 3 T11: 0.2517 T22: 0.2225 REMARK 3 T33: 0.2066 T12: 0.0343 REMARK 3 T13: -0.0510 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 7.4309 L22: 8.0115 REMARK 3 L33: 7.2694 L12: -7.9704 REMARK 3 L13: -7.8887 L23: 7.2014 REMARK 3 S TENSOR REMARK 3 S11: -0.0990 S12: -0.2493 S13: 0.2220 REMARK 3 S21: 0.2597 S22: -0.0036 S23: -0.2475 REMARK 3 S31: -0.0492 S32: 0.2187 S33: 0.1247 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 599 THROUGH 627 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3077 -5.6301 -7.8515 REMARK 3 T TENSOR REMARK 3 T11: 0.3359 T22: 0.2609 REMARK 3 T33: 0.1074 T12: 0.1201 REMARK 3 T13: -0.0071 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 6.3637 L22: 8.9719 REMARK 3 L33: 1.5033 L12: -3.0305 REMARK 3 L13: -0.3730 L23: 1.1133 REMARK 3 S TENSOR REMARK 3 S11: 0.1683 S12: 0.5226 S13: -0.2484 REMARK 3 S21: -0.4570 S22: -0.1946 S23: 0.1083 REMARK 3 S31: 0.3761 S32: 0.4634 S33: 0.0292 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 567 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3035 0.8120 -4.6712 REMARK 3 T TENSOR REMARK 3 T11: 0.1573 T22: 0.2264 REMARK 3 T33: 0.1808 T12: -0.0220 REMARK 3 T13: 0.0044 T23: -0.0776 REMARK 3 L TENSOR REMARK 3 L11: 3.2187 L22: 5.9632 REMARK 3 L33: 4.6875 L12: -2.6212 REMARK 3 L13: 1.4904 L23: -1.3042 REMARK 3 S TENSOR REMARK 3 S11: 0.1435 S12: 0.0242 S13: -0.2498 REMARK 3 S21: -0.1286 S22: -0.0516 S23: 0.3261 REMARK 3 S31: 0.3123 S32: -0.3824 S33: -0.1105 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 607 THROUGH 628 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0427 -10.2201 2.6391 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.1256 REMARK 3 T33: 0.1054 T12: 0.0214 REMARK 3 T13: -0.0241 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 8.6158 L22: 8.0917 REMARK 3 L33: 6.2998 L12: -4.6890 REMARK 3 L13: -2.0050 L23: 1.9915 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: 0.0552 S13: 0.1604 REMARK 3 S21: 0.2272 S22: 0.0683 S23: -0.4600 REMARK 3 S31: 0.2518 S32: 0.3450 S33: 0.0395 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7765 13.6657 -1.0628 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1942 REMARK 3 T33: 0.1612 T12: 0.0574 REMARK 3 T13: 0.0219 T23: -0.0595 REMARK 3 L TENSOR REMARK 3 L11: 5.9355 L22: 3.0829 REMARK 3 L33: 5.2625 L12: 1.2580 REMARK 3 L13: -1.7572 L23: 0.6854 REMARK 3 S TENSOR REMARK 3 S11: -0.1381 S12: -0.4765 S13: 0.2438 REMARK 3 S21: -0.1532 S22: 0.1665 S23: 0.1029 REMARK 3 S31: 0.0683 S32: 0.2047 S33: 0.0016 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8948 12.6739 -1.0995 REMARK 3 T TENSOR REMARK 3 T11: 0.2046 T22: 0.0456 REMARK 3 T33: 0.2665 T12: 0.0111 REMARK 3 T13: -0.0381 T23: 0.0620 REMARK 3 L TENSOR REMARK 3 L11: 5.8859 L22: 4.5718 REMARK 3 L33: 6.6079 L12: 0.5040 REMARK 3 L13: -2.4178 L23: -0.0316 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.0694 S13: -0.0275 REMARK 3 S21: -0.2643 S22: 0.1488 S23: 0.4716 REMARK 3 S31: 0.0033 S32: -0.0780 S33: -0.2674 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24281 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 36.661 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.26300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2QL2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.1 M TRIS, PH 8.5, 0.2 M REMARK 280 LITHIUM SULFATE MONOHYDRATE OR 0.2 M SODIUM ACETATE TRIHYDRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 567 REMARK 465 ARG B 628 REMARK 465 HIS C 567 REMARK 465 MET C 568 REMARK 465 ARG C 628 REMARK 465 DA E 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 569 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 602 CG OD1 OD2 REMARK 470 MET B 568 CG SD CE REMARK 470 ARG B 569 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 576 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 586 CG CD OE1 OE2 REMARK 470 ARG B 593 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 600 CG CD CE NZ REMARK 470 ARG B 626 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 627 CG CD OE1 OE2 REMARK 470 ARG C 569 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 570 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 586 CG CD OE1 OE2 REMARK 470 LYS C 600 CG CD CE NZ REMARK 470 ARG C 626 CZ NH1 NH2 REMARK 470 GLU C 627 CG CD OE1 OE2 REMARK 470 GLU D 586 CG CD OE1 OE2 REMARK 470 GLU D 590 CG CD OE1 OE2 REMARK 470 1CC E 2 P OP1 OP2 REMARK 470 DT F 12 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT F 12 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT F 12 C7 C6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL X 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO F 102 DBREF 6OD5 A 569 628 UNP P15884 ITF2_HUMAN 405 464 DBREF 6OD5 B 569 628 UNP P15884 ITF2_HUMAN 405 464 DBREF 6OD5 X 1 12 PDB 6OD5 6OD5 1 12 DBREF 6OD5 Y 1 12 PDB 6OD5 6OD5 1 12 DBREF 6OD5 C 569 628 UNP P15884 ITF2_HUMAN 405 464 DBREF 6OD5 D 569 628 UNP P15884 ITF2_HUMAN 405 464 DBREF 6OD5 E 1 12 PDB 6OD5 6OD5 1 12 DBREF 6OD5 F 1 12 PDB 6OD5 6OD5 1 12 SEQADV 6OD5 HIS A 567 UNP P15884 EXPRESSION TAG SEQADV 6OD5 MET A 568 UNP P15884 EXPRESSION TAG SEQADV 6OD5 HIS B 567 UNP P15884 EXPRESSION TAG SEQADV 6OD5 MET B 568 UNP P15884 EXPRESSION TAG SEQADV 6OD5 HIS C 567 UNP P15884 EXPRESSION TAG SEQADV 6OD5 MET C 568 UNP P15884 EXPRESSION TAG SEQADV 6OD5 HIS D 567 UNP P15884 EXPRESSION TAG SEQADV 6OD5 MET D 568 UNP P15884 EXPRESSION TAG SEQRES 1 A 62 HIS MET ARG ARG MET ALA ASN ASN ALA ARG GLU ARG LEU SEQRES 2 A 62 ARG VAL ARG ASP ILE ASN GLU ALA PHE LYS GLU LEU GLY SEQRES 3 A 62 ARG MET VAL GLN LEU HIS LEU LYS SER ASP LYS PRO GLN SEQRES 4 A 62 THR LYS LEU LEU ILE LEU HIS GLN ALA VAL ALA VAL ILE SEQRES 5 A 62 LEU SER LEU GLU GLN GLN VAL ARG GLU ARG SEQRES 1 B 62 HIS MET ARG ARG MET ALA ASN ASN ALA ARG GLU ARG LEU SEQRES 2 B 62 ARG VAL ARG ASP ILE ASN GLU ALA PHE LYS GLU LEU GLY SEQRES 3 B 62 ARG MET VAL GLN LEU HIS LEU LYS SER ASP LYS PRO GLN SEQRES 4 B 62 THR LYS LEU LEU ILE LEU HIS GLN ALA VAL ALA VAL ILE SEQRES 5 B 62 LEU SER LEU GLU GLN GLN VAL ARG GLU ARG SEQRES 1 X 12 DA 1CC DG DC DA DC DG DT DG 1CC DG DT SEQRES 1 Y 12 DA 1CC DG DC DA DC DG DT DG 1CC DG DT SEQRES 1 C 62 HIS MET ARG ARG MET ALA ASN ASN ALA ARG GLU ARG LEU SEQRES 2 C 62 ARG VAL ARG ASP ILE ASN GLU ALA PHE LYS GLU LEU GLY SEQRES 3 C 62 ARG MET VAL GLN LEU HIS LEU LYS SER ASP LYS PRO GLN SEQRES 4 C 62 THR LYS LEU LEU ILE LEU HIS GLN ALA VAL ALA VAL ILE SEQRES 5 C 62 LEU SER LEU GLU GLN GLN VAL ARG GLU ARG SEQRES 1 D 62 HIS MET ARG ARG MET ALA ASN ASN ALA ARG GLU ARG LEU SEQRES 2 D 62 ARG VAL ARG ASP ILE ASN GLU ALA PHE LYS GLU LEU GLY SEQRES 3 D 62 ARG MET VAL GLN LEU HIS LEU LYS SER ASP LYS PRO GLN SEQRES 4 D 62 THR LYS LEU LEU ILE LEU HIS GLN ALA VAL ALA VAL ILE SEQRES 5 D 62 LEU SER LEU GLU GLN GLN VAL ARG GLU ARG SEQRES 1 E 12 DA 1CC DG DC DA DC DG DT DG 1CC DG DT SEQRES 1 F 12 DA 1CC DG DC DA DC DG DT DG 1CC DG DT HET 1CC X 2 22 HET 1CC X 10 22 HET 1CC Y 2 22 HET 1CC Y 10 22 HET 1CC E 2 19 HET 1CC E 10 22 HET 1CC F 2 22 HET 1CC F 10 22 HET EDO A 701 4 HET CL A 702 1 HET EDO B 701 4 HET GOL X 801 6 HET EDO C 701 4 HET EDO F 101 4 HET EDO F 102 4 HETNAM 1CC 5-CARBOXY-2'-DEOXYCYTIDINE MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 1CC 8(C10 H14 N3 O9 P) FORMUL 9 EDO 5(C2 H6 O2) FORMUL 10 CL CL 1- FORMUL 12 GOL C3 H8 O3 FORMUL 16 HOH *136(H2 O) HELIX 1 AA1 HIS A 567 LYS A 600 1 34 HELIX 2 AA2 THR A 606 GLU A 627 1 22 HELIX 3 AA3 ARG B 569 LEU B 599 1 31 HELIX 4 AA4 THR B 606 GLN B 624 1 19 HELIX 5 AA5 ARG C 570 LEU C 599 1 30 HELIX 6 AA6 THR C 606 GLN C 624 1 19 HELIX 7 AA7 MET D 568 LYS D 600 1 33 HELIX 8 AA8 THR D 606 GLU D 627 1 22 LINK O3' DA X 1 P 1CC X 2 1555 1555 1.61 LINK O3' 1CC X 2 P DG X 3 1555 1555 1.61 LINK O3' DG X 9 P 1CC X 10 1555 1555 1.61 LINK O3' 1CC X 10 P DG X 11 1555 1555 1.61 LINK O3' DA Y 1 P 1CC Y 2 1555 1555 1.61 LINK O3' 1CC Y 2 P DG Y 3 1555 1555 1.61 LINK O3' DG Y 9 P 1CC Y 10 1555 1555 1.61 LINK O3' 1CC Y 10 P DG Y 11 1555 1555 1.61 LINK O3' 1CC E 2 P DG E 3 1555 1555 1.61 LINK O3' DG E 9 P 1CC E 10 1555 1555 1.61 LINK O3' 1CC E 10 P DG E 11 1555 1555 1.61 LINK O3' DA F 1 P 1CC F 2 1555 1555 1.61 LINK O3' 1CC F 2 P DG F 3 1555 1555 1.61 LINK O3' DG F 9 P 1CC F 10 1555 1555 1.61 LINK O3' 1CC F 10 P DG F 11 1555 1555 1.61 SITE 1 AC1 1 ALA A 616 SITE 1 AC2 2 ARG A 570 ARG A 628 SITE 1 AC3 4 ARG B 576 LEU B 579 ARG B 580 ASP B 583 SITE 1 AC4 3 DC X 6 DT Y 8 DG Y 9 SITE 1 AC5 6 LYS B 600 SER B 601 ASP B 602 LYS C 600 SITE 2 AC5 6 SER C 601 ASP C 602 SITE 1 AC6 6 DT E 8 DG E 9 DA F 5 DC F 6 SITE 2 AC6 6 EDO F 102 HOH F 201 SITE 1 AC7 4 DG E 7 DT E 8 DC F 6 EDO F 101 CRYST1 44.677 44.757 54.640 78.63 78.88 79.27 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022383 -0.004243 -0.003743 0.00000 SCALE2 0.000000 0.022741 -0.003856 0.00000 SCALE3 0.000000 0.000000 0.018918 0.00000