HEADER HYDROLASE 26-MAR-19 6ODB TITLE CRYSTAL STRUCTURE OF HDAC8 IN COMPLEX WITH COMPOUND 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 8; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: HD8; COMPND 5 EC: 3.5.1.98; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDAC8, HDACL1, CDA07; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HISTONE DEACETYLASE, HDAC8, HYDROXAMIC ACID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHENG,C.CONTI,J.CARAVELLA,M.-M.ZABLOCKI,K.BAIR,N.BARCZAK,B.HAN, AUTHOR 2 D.LANCIA JR.,C.LIU,M.MARTIN,P.Y.NG,A.RUDNITSKAYA,J.J.THOMASON, AUTHOR 3 R.GARCIA-DANCEY,C.HARDY,J.LAHDENRANTA,C.LENG,P.LI,E.PARDO, AUTHOR 4 A.SALDAHNA,T.TAN,A.V.TOMS,L.YAO,C.ZHANG REVDAT 2 11-OCT-23 6ODB 1 LINK REVDAT 1 01-APR-20 6ODB 0 JRNL AUTH X.ZHENG,C.CONTI,J.CARAVELLA,M.-M.ZABLOCKI,K.BAIR,N.BARCZAK, JRNL AUTH 2 B.HAN,D.LANCIA JR.,C.LIU,M.MARTIN,P.Y.NG,A.RUDNITSKAYA, JRNL AUTH 3 J.J.THOMASON,R.GARCIA-DANCEY,C.HARDY,J.LAHDENRANTA,C.LENG, JRNL AUTH 4 P.LI,E.PARDO,A.SALDAHNA,T.TAN,A.V.TOMS,L.YAO,C.ZHANG JRNL TITL STRUCTURE-BASED DISCOVERY OF NOVEL JRNL TITL 2 N-(E)-N-HYDROXY-3-(2-(2-OXOIMIDAZOLIDIN-1-YL)PHENYL) JRNL TITL 3 ACRYLAMIDES AS POTENT AND SELECTIVE HDAC8 INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2698 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.20000 REMARK 3 B22 (A**2) : -1.82000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.825 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.315 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.244 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.404 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8809 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 8226 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11866 ; 1.291 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18947 ; 0.977 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1078 ; 6.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 375 ;34.267 ;24.187 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1427 ;16.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;15.799 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1289 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9877 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2026 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4324 ; 3.341 ; 5.277 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4323 ; 3.341 ; 5.277 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5398 ; 5.213 ; 7.909 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5399 ; 5.213 ; 7.910 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4485 ; 3.665 ; 5.754 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4485 ; 3.663 ; 5.754 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6469 ; 5.902 ; 8.472 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10209 ; 8.362 ;43.335 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10199 ; 8.362 ;43.346 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 14 376 B 14 376 22144 0.09 0.05 REMARK 3 2 A 14 376 C 14 376 21536 0.09 0.05 REMARK 3 3 B 14 376 C 14 376 21563 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6ODB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38256 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1T64 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH5.3, 5% PEG6000, 0.12M GLY REMARK 280 -GLY-GLY, 2MM TCEP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.47500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 ILE A 378 REMARK 465 GLU A 379 REMARK 465 GLY A 380 REMARK 465 ARG A 381 REMARK 465 GLY A 382 REMARK 465 SER A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 MET B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 PRO B 7 REMARK 465 ALA B 8 REMARK 465 ASP B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 GLN B 12 REMARK 465 SER B 13 REMARK 465 ILE B 378 REMARK 465 GLU B 379 REMARK 465 GLY B 380 REMARK 465 ARG B 381 REMARK 465 GLY B 382 REMARK 465 SER B 383 REMARK 465 HIS B 384 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 465 MET C -23 REMARK 465 HIS C -22 REMARK 465 HIS C -21 REMARK 465 HIS C -20 REMARK 465 HIS C -19 REMARK 465 HIS C -18 REMARK 465 HIS C -17 REMARK 465 SER C -16 REMARK 465 SER C -15 REMARK 465 GLY C -14 REMARK 465 VAL C -13 REMARK 465 ASP C -12 REMARK 465 LEU C -11 REMARK 465 GLY C -10 REMARK 465 THR C -9 REMARK 465 GLU C -8 REMARK 465 ASN C -7 REMARK 465 LEU C -6 REMARK 465 TYR C -5 REMARK 465 PHE C -4 REMARK 465 GLN C -3 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 GLU C 3 REMARK 465 PRO C 4 REMARK 465 GLU C 5 REMARK 465 GLU C 6 REMARK 465 PRO C 7 REMARK 465 ALA C 8 REMARK 465 ASP C 9 REMARK 465 SER C 10 REMARK 465 GLY C 11 REMARK 465 GLN C 12 REMARK 465 SER C 13 REMARK 465 GLY C 86 REMARK 465 ASP C 87 REMARK 465 ASP C 88 REMARK 465 ASP C 89 REMARK 465 HIS C 90 REMARK 465 PRO C 91 REMARK 465 ASP C 92 REMARK 465 SER C 93 REMARK 465 ILE C 94 REMARK 465 GLU C 95 REMARK 465 VAL C 377 REMARK 465 ILE C 378 REMARK 465 GLU C 379 REMARK 465 GLY C 380 REMARK 465 ARG C 381 REMARK 465 GLY C 382 REMARK 465 SER C 383 REMARK 465 HIS C 384 REMARK 465 HIS C 385 REMARK 465 HIS C 386 REMARK 465 HIS C 387 REMARK 465 HIS C 388 REMARK 465 HIS C 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 171 O ASN A 256 2.12 REMARK 500 NH1 ARG C 171 O ASN C 256 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 33 -44.35 98.69 REMARK 500 GLU A 85 -82.77 -108.43 REMARK 500 ALA A 104 47.93 -87.00 REMARK 500 TYR A 224 -1.28 78.66 REMARK 500 SER A 276 -66.13 -124.42 REMARK 500 HIS A 334 -179.89 177.58 REMARK 500 ALA B 104 47.51 -88.61 REMARK 500 SER B 150 139.86 -170.76 REMARK 500 TYR B 224 -2.01 77.31 REMARK 500 SER B 276 -66.48 -125.95 REMARK 500 HIS B 334 179.23 178.62 REMARK 500 SER C 30 -0.91 82.98 REMARK 500 LYS C 33 -43.72 97.20 REMARK 500 ALA C 104 49.59 -85.45 REMARK 500 TYR C 224 -1.35 77.71 REMARK 500 SER C 276 -64.94 -125.18 REMARK 500 HIS C 334 179.19 179.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 176 O REMARK 620 2 ASP A 176 OD1 72.6 REMARK 620 3 ASP A 178 O 107.4 105.2 REMARK 620 4 HIS A 180 O 160.4 89.1 83.5 REMARK 620 5 SER A 199 OG 82.5 100.1 154.6 94.5 REMARK 620 6 LEU A 200 O 81.1 149.7 68.4 118.3 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 178 OD1 REMARK 620 2 HIS A 180 ND1 101.7 REMARK 620 3 ASP A 267 OD2 107.9 106.4 REMARK 620 4 M8G A 401 O42 154.7 97.9 81.4 REMARK 620 5 M8G A 401 N43 105.0 96.0 135.0 56.9 REMARK 620 6 M8G A 401 O45 76.9 119.7 131.9 79.5 33.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 189 O REMARK 620 2 THR A 192 O 74.5 REMARK 620 3 VAL A 195 O 114.1 83.1 REMARK 620 4 TYR A 225 O 153.5 125.3 87.8 REMARK 620 5 HOH A 517 O 88.0 98.5 157.3 72.7 REMARK 620 6 HOH A 538 O 71.6 146.1 111.8 86.7 79.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 176 O REMARK 620 2 ASP B 176 OD1 74.2 REMARK 620 3 ASP B 178 O 108.5 107.5 REMARK 620 4 HIS B 180 O 161.8 89.3 83.4 REMARK 620 5 SER B 199 OG 82.0 99.8 152.5 93.6 REMARK 620 6 LEU B 200 O 81.1 151.6 67.3 116.6 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 178 OD1 REMARK 620 2 HIS B 180 ND1 100.5 REMARK 620 3 ASP B 267 OD2 107.6 104.3 REMARK 620 4 M8G B 401 O42 157.9 94.6 84.0 REMARK 620 5 M8G B 401 N43 107.9 97.1 133.9 53.7 REMARK 620 6 M8G B 401 O45 81.2 117.1 135.6 77.6 30.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 189 O REMARK 620 2 THR B 192 O 74.2 REMARK 620 3 VAL B 195 O 114.8 82.0 REMARK 620 4 TYR B 225 O 156.1 122.8 85.9 REMARK 620 5 HOH B 518 O 71.8 145.3 119.1 88.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 404 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 176 O REMARK 620 2 ASP C 176 OD1 73.5 REMARK 620 3 ASP C 178 O 105.6 105.0 REMARK 620 4 HIS C 180 O 162.6 90.0 83.5 REMARK 620 5 SER C 199 OG 82.7 101.7 153.3 95.7 REMARK 620 6 LEU C 200 O 79.9 148.8 66.8 117.5 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 178 OD1 REMARK 620 2 HIS C 180 ND1 101.6 REMARK 620 3 ASP C 267 OD2 106.7 103.4 REMARK 620 4 M8G C 401 O42 157.6 98.4 78.1 REMARK 620 5 M8G C 401 O45 83.6 122.3 130.3 77.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE C 189 O REMARK 620 2 THR C 192 O 74.9 REMARK 620 3 VAL C 195 O 112.5 82.5 REMARK 620 4 TYR C 225 O 155.1 125.8 86.1 REMARK 620 5 HOH C 506 O 86.9 100.1 160.3 76.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M8G A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M8G B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M8G C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 404 DBREF 6ODB A 1 377 UNP Q9BY41 HDAC8_HUMAN 1 377 DBREF 6ODB B 1 377 UNP Q9BY41 HDAC8_HUMAN 1 377 DBREF 6ODB C 1 377 UNP Q9BY41 HDAC8_HUMAN 1 377 SEQADV 6ODB MET A -23 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A -22 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A -21 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A -20 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A -19 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A -18 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A -17 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER A -16 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER A -15 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY A -14 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB VAL A -13 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ASP A -12 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB LEU A -11 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY A -10 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB THR A -9 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLU A -8 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ASN A -7 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB LEU A -6 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB TYR A -5 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB PHE A -4 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLN A -3 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER A -2 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ASN A -1 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ALA A 0 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ILE A 378 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLU A 379 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY A 380 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ARG A 381 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY A 382 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER A 383 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A 384 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A 385 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A 386 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A 387 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A 388 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS A 389 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB MET B -23 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B -22 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B -21 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B -20 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B -19 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B -18 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B -17 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER B -16 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER B -15 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY B -14 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB VAL B -13 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ASP B -12 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB LEU B -11 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY B -10 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB THR B -9 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLU B -8 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ASN B -7 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB LEU B -6 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB TYR B -5 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB PHE B -4 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLN B -3 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER B -2 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ASN B -1 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ALA B 0 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ILE B 378 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLU B 379 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY B 380 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ARG B 381 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY B 382 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER B 383 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B 384 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B 385 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B 386 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B 387 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B 388 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS B 389 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB MET C -23 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C -22 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C -21 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C -20 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C -19 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C -18 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C -17 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER C -16 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER C -15 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY C -14 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB VAL C -13 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ASP C -12 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB LEU C -11 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY C -10 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB THR C -9 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLU C -8 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ASN C -7 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB LEU C -6 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB TYR C -5 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB PHE C -4 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLN C -3 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER C -2 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ASN C -1 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ALA C 0 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ILE C 378 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLU C 379 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY C 380 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB ARG C 381 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB GLY C 382 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB SER C 383 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C 384 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C 385 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C 386 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C 387 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C 388 UNP Q9BY41 EXPRESSION TAG SEQADV 6ODB HIS C 389 UNP Q9BY41 EXPRESSION TAG SEQRES 1 A 413 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 413 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET GLU SEQRES 3 A 413 GLU PRO GLU GLU PRO ALA ASP SER GLY GLN SER LEU VAL SEQRES 4 A 413 PRO VAL TYR ILE TYR SER PRO GLU TYR VAL SER MET CYS SEQRES 5 A 413 ASP SER LEU ALA LYS ILE PRO LYS ARG ALA SER MET VAL SEQRES 6 A 413 HIS SER LEU ILE GLU ALA TYR ALA LEU HIS LYS GLN MET SEQRES 7 A 413 ARG ILE VAL LYS PRO LYS VAL ALA SER MET GLU GLU MET SEQRES 8 A 413 ALA THR PHE HIS THR ASP ALA TYR LEU GLN HIS LEU GLN SEQRES 9 A 413 LYS VAL SER GLN GLU GLY ASP ASP ASP HIS PRO ASP SER SEQRES 10 A 413 ILE GLU TYR GLY LEU GLY TYR ASP CYS PRO ALA THR GLU SEQRES 11 A 413 GLY ILE PHE ASP TYR ALA ALA ALA ILE GLY GLY ALA THR SEQRES 12 A 413 ILE THR ALA ALA GLN CYS LEU ILE ASP GLY MET CYS LYS SEQRES 13 A 413 VAL ALA ILE ASN TRP SER GLY GLY TRP HIS HIS ALA LYS SEQRES 14 A 413 LYS ASP GLU ALA SER GLY PHE CYS TYR LEU ASN ASP ALA SEQRES 15 A 413 VAL LEU GLY ILE LEU ARG LEU ARG ARG LYS PHE GLU ARG SEQRES 16 A 413 ILE LEU TYR VAL ASP LEU ASP LEU HIS HIS GLY ASP GLY SEQRES 17 A 413 VAL GLU ASP ALA PHE SER PHE THR SER LYS VAL MET THR SEQRES 18 A 413 VAL SER LEU HIS LYS PHE SER PRO GLY PHE PHE PRO GLY SEQRES 19 A 413 THR GLY ASP VAL SER ASP VAL GLY LEU GLY LYS GLY ARG SEQRES 20 A 413 TYR TYR SER VAL ASN VAL PRO ILE GLN ASP GLY ILE GLN SEQRES 21 A 413 ASP GLU LYS TYR TYR GLN ILE CYS GLU SER VAL LEU LYS SEQRES 22 A 413 GLU VAL TYR GLN ALA PHE ASN PRO LYS ALA VAL VAL LEU SEQRES 23 A 413 GLN LEU GLY ALA ASP THR ILE ALA GLY ASP PRO MET CYS SEQRES 24 A 413 SER PHE ASN MET THR PRO VAL GLY ILE GLY LYS CYS LEU SEQRES 25 A 413 LYS TYR ILE LEU GLN TRP GLN LEU ALA THR LEU ILE LEU SEQRES 26 A 413 GLY GLY GLY GLY TYR ASN LEU ALA ASN THR ALA ARG CYS SEQRES 27 A 413 TRP THR TYR LEU THR GLY VAL ILE LEU GLY LYS THR LEU SEQRES 28 A 413 SER SER GLU ILE PRO ASP HIS GLU PHE PHE THR ALA TYR SEQRES 29 A 413 GLY PRO ASP TYR VAL LEU GLU ILE THR PRO SER CYS ARG SEQRES 30 A 413 PRO ASP ARG ASN GLU PRO HIS ARG ILE GLN GLN ILE LEU SEQRES 31 A 413 ASN TYR ILE LYS GLY ASN LEU LYS HIS VAL VAL ILE GLU SEQRES 32 A 413 GLY ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 413 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 413 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET GLU SEQRES 3 B 413 GLU PRO GLU GLU PRO ALA ASP SER GLY GLN SER LEU VAL SEQRES 4 B 413 PRO VAL TYR ILE TYR SER PRO GLU TYR VAL SER MET CYS SEQRES 5 B 413 ASP SER LEU ALA LYS ILE PRO LYS ARG ALA SER MET VAL SEQRES 6 B 413 HIS SER LEU ILE GLU ALA TYR ALA LEU HIS LYS GLN MET SEQRES 7 B 413 ARG ILE VAL LYS PRO LYS VAL ALA SER MET GLU GLU MET SEQRES 8 B 413 ALA THR PHE HIS THR ASP ALA TYR LEU GLN HIS LEU GLN SEQRES 9 B 413 LYS VAL SER GLN GLU GLY ASP ASP ASP HIS PRO ASP SER SEQRES 10 B 413 ILE GLU TYR GLY LEU GLY TYR ASP CYS PRO ALA THR GLU SEQRES 11 B 413 GLY ILE PHE ASP TYR ALA ALA ALA ILE GLY GLY ALA THR SEQRES 12 B 413 ILE THR ALA ALA GLN CYS LEU ILE ASP GLY MET CYS LYS SEQRES 13 B 413 VAL ALA ILE ASN TRP SER GLY GLY TRP HIS HIS ALA LYS SEQRES 14 B 413 LYS ASP GLU ALA SER GLY PHE CYS TYR LEU ASN ASP ALA SEQRES 15 B 413 VAL LEU GLY ILE LEU ARG LEU ARG ARG LYS PHE GLU ARG SEQRES 16 B 413 ILE LEU TYR VAL ASP LEU ASP LEU HIS HIS GLY ASP GLY SEQRES 17 B 413 VAL GLU ASP ALA PHE SER PHE THR SER LYS VAL MET THR SEQRES 18 B 413 VAL SER LEU HIS LYS PHE SER PRO GLY PHE PHE PRO GLY SEQRES 19 B 413 THR GLY ASP VAL SER ASP VAL GLY LEU GLY LYS GLY ARG SEQRES 20 B 413 TYR TYR SER VAL ASN VAL PRO ILE GLN ASP GLY ILE GLN SEQRES 21 B 413 ASP GLU LYS TYR TYR GLN ILE CYS GLU SER VAL LEU LYS SEQRES 22 B 413 GLU VAL TYR GLN ALA PHE ASN PRO LYS ALA VAL VAL LEU SEQRES 23 B 413 GLN LEU GLY ALA ASP THR ILE ALA GLY ASP PRO MET CYS SEQRES 24 B 413 SER PHE ASN MET THR PRO VAL GLY ILE GLY LYS CYS LEU SEQRES 25 B 413 LYS TYR ILE LEU GLN TRP GLN LEU ALA THR LEU ILE LEU SEQRES 26 B 413 GLY GLY GLY GLY TYR ASN LEU ALA ASN THR ALA ARG CYS SEQRES 27 B 413 TRP THR TYR LEU THR GLY VAL ILE LEU GLY LYS THR LEU SEQRES 28 B 413 SER SER GLU ILE PRO ASP HIS GLU PHE PHE THR ALA TYR SEQRES 29 B 413 GLY PRO ASP TYR VAL LEU GLU ILE THR PRO SER CYS ARG SEQRES 30 B 413 PRO ASP ARG ASN GLU PRO HIS ARG ILE GLN GLN ILE LEU SEQRES 31 B 413 ASN TYR ILE LYS GLY ASN LEU LYS HIS VAL VAL ILE GLU SEQRES 32 B 413 GLY ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 413 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 C 413 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET GLU SEQRES 3 C 413 GLU PRO GLU GLU PRO ALA ASP SER GLY GLN SER LEU VAL SEQRES 4 C 413 PRO VAL TYR ILE TYR SER PRO GLU TYR VAL SER MET CYS SEQRES 5 C 413 ASP SER LEU ALA LYS ILE PRO LYS ARG ALA SER MET VAL SEQRES 6 C 413 HIS SER LEU ILE GLU ALA TYR ALA LEU HIS LYS GLN MET SEQRES 7 C 413 ARG ILE VAL LYS PRO LYS VAL ALA SER MET GLU GLU MET SEQRES 8 C 413 ALA THR PHE HIS THR ASP ALA TYR LEU GLN HIS LEU GLN SEQRES 9 C 413 LYS VAL SER GLN GLU GLY ASP ASP ASP HIS PRO ASP SER SEQRES 10 C 413 ILE GLU TYR GLY LEU GLY TYR ASP CYS PRO ALA THR GLU SEQRES 11 C 413 GLY ILE PHE ASP TYR ALA ALA ALA ILE GLY GLY ALA THR SEQRES 12 C 413 ILE THR ALA ALA GLN CYS LEU ILE ASP GLY MET CYS LYS SEQRES 13 C 413 VAL ALA ILE ASN TRP SER GLY GLY TRP HIS HIS ALA LYS SEQRES 14 C 413 LYS ASP GLU ALA SER GLY PHE CYS TYR LEU ASN ASP ALA SEQRES 15 C 413 VAL LEU GLY ILE LEU ARG LEU ARG ARG LYS PHE GLU ARG SEQRES 16 C 413 ILE LEU TYR VAL ASP LEU ASP LEU HIS HIS GLY ASP GLY SEQRES 17 C 413 VAL GLU ASP ALA PHE SER PHE THR SER LYS VAL MET THR SEQRES 18 C 413 VAL SER LEU HIS LYS PHE SER PRO GLY PHE PHE PRO GLY SEQRES 19 C 413 THR GLY ASP VAL SER ASP VAL GLY LEU GLY LYS GLY ARG SEQRES 20 C 413 TYR TYR SER VAL ASN VAL PRO ILE GLN ASP GLY ILE GLN SEQRES 21 C 413 ASP GLU LYS TYR TYR GLN ILE CYS GLU SER VAL LEU LYS SEQRES 22 C 413 GLU VAL TYR GLN ALA PHE ASN PRO LYS ALA VAL VAL LEU SEQRES 23 C 413 GLN LEU GLY ALA ASP THR ILE ALA GLY ASP PRO MET CYS SEQRES 24 C 413 SER PHE ASN MET THR PRO VAL GLY ILE GLY LYS CYS LEU SEQRES 25 C 413 LYS TYR ILE LEU GLN TRP GLN LEU ALA THR LEU ILE LEU SEQRES 26 C 413 GLY GLY GLY GLY TYR ASN LEU ALA ASN THR ALA ARG CYS SEQRES 27 C 413 TRP THR TYR LEU THR GLY VAL ILE LEU GLY LYS THR LEU SEQRES 28 C 413 SER SER GLU ILE PRO ASP HIS GLU PHE PHE THR ALA TYR SEQRES 29 C 413 GLY PRO ASP TYR VAL LEU GLU ILE THR PRO SER CYS ARG SEQRES 30 C 413 PRO ASP ARG ASN GLU PRO HIS ARG ILE GLN GLN ILE LEU SEQRES 31 C 413 ASN TYR ILE LYS GLY ASN LEU LYS HIS VAL VAL ILE GLU SEQRES 32 C 413 GLY ARG GLY SER HIS HIS HIS HIS HIS HIS HET M8G A 401 28 HET ZN A 402 1 HET K A 403 1 HET K A 404 1 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET M8G B 401 28 HET ZN B 402 1 HET K B 403 1 HET K B 404 1 HET GOL B 405 6 HET M8G C 401 28 HET ZN C 402 1 HET K C 403 1 HET K C 404 1 HETNAM M8G N-{2-[(1E)-3-(HYDROXYAMINO)-3-OXOPROP-1-EN-1- HETNAM 2 M8G YL]PHENYL}-2-PHENOXYBENZAMIDE HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 M8G 3(C22 H18 N2 O4) FORMUL 5 ZN 3(ZN 2+) FORMUL 6 K 6(K 1+) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 20 HOH *90(H2 O) HELIX 1 AA1 SER A 21 SER A 30 1 10 HELIX 2 AA2 LYS A 36 TYR A 48 1 13 HELIX 3 AA3 ALA A 49 MET A 54 5 6 HELIX 4 AA4 SER A 63 ALA A 68 1 6 HELIX 5 AA5 THR A 72 GLU A 85 1 14 HELIX 6 AA6 HIS A 90 GLY A 97 5 8 HELIX 7 AA7 GLY A 107 ASP A 128 1 22 HELIX 8 AA8 ASN A 156 ARG A 167 1 12 HELIX 9 AA9 GLY A 182 SER A 190 1 9 HELIX 10 AB1 LEU A 219 ARG A 223 5 5 HELIX 11 AB2 GLN A 236 ASN A 256 1 21 HELIX 12 AB3 THR A 280 GLN A 293 1 14 HELIX 13 AB4 ASN A 307 GLY A 324 1 18 HELIX 14 AB5 PHE A 336 GLY A 341 5 6 HELIX 15 AB6 GLU A 358 VAL A 376 1 19 HELIX 16 AB7 SER B 21 SER B 30 1 10 HELIX 17 AB8 LYS B 36 TYR B 48 1 13 HELIX 18 AB9 ALA B 49 MET B 54 5 6 HELIX 19 AC1 SER B 63 ALA B 68 1 6 HELIX 20 AC2 THR B 72 GLU B 85 1 14 HELIX 21 AC3 HIS B 90 GLY B 97 5 8 HELIX 22 AC4 GLY B 107 ASP B 128 1 22 HELIX 23 AC5 ASN B 156 ARG B 167 1 12 HELIX 24 AC6 GLY B 182 PHE B 189 1 8 HELIX 25 AC7 LEU B 219 ARG B 223 5 5 HELIX 26 AC8 GLN B 236 ASN B 256 1 21 HELIX 27 AC9 THR B 280 GLN B 293 1 14 HELIX 28 AD1 ASN B 307 GLY B 324 1 18 HELIX 29 AD2 PHE B 336 GLY B 341 5 6 HELIX 30 AD3 GLU B 358 VAL B 376 1 19 HELIX 31 AD4 SER C 21 ASP C 29 1 9 HELIX 32 AD5 LYS C 36 TYR C 48 1 13 HELIX 33 AD6 ALA C 49 MET C 54 5 6 HELIX 34 AD7 SER C 63 ALA C 68 1 6 HELIX 35 AD8 THR C 72 GLU C 85 1 14 HELIX 36 AD9 GLY C 107 ASP C 128 1 22 HELIX 37 AE1 ASN C 156 ARG C 167 1 12 HELIX 38 AE2 GLY C 182 SER C 190 1 9 HELIX 39 AE3 LEU C 219 ARG C 223 5 5 HELIX 40 AE4 GLN C 236 ASN C 256 1 21 HELIX 41 AE5 THR C 280 GLN C 293 1 14 HELIX 42 AE6 ASN C 307 GLY C 324 1 18 HELIX 43 AE7 PHE C 336 GLY C 341 5 6 HELIX 44 AE8 GLU C 358 VAL C 376 1 19 SHEET 1 AA1 8 ARG A 55 VAL A 57 0 SHEET 2 AA1 8 VAL A 17 ILE A 19 1 N TYR A 18 O ARG A 55 SHEET 3 AA1 8 VAL A 133 ASN A 136 1 O ILE A 135 N ILE A 19 SHEET 4 AA1 8 ALA A 297 LEU A 301 1 O ILE A 300 N ALA A 134 SHEET 5 AA1 8 ALA A 259 GLN A 263 1 N VAL A 260 O LEU A 299 SHEET 6 AA1 8 ILE A 172 ASP A 176 1 N VAL A 175 O GLN A 263 SHEET 7 AA1 8 VAL A 195 LYS A 202 1 O MET A 196 N TYR A 174 SHEET 8 AA1 8 SER A 226 ILE A 231 1 O VAL A 227 N THR A 197 SHEET 1 AA2 8 ARG B 55 VAL B 57 0 SHEET 2 AA2 8 VAL B 17 ILE B 19 1 N TYR B 18 O ARG B 55 SHEET 3 AA2 8 VAL B 133 ASN B 136 1 O ILE B 135 N ILE B 19 SHEET 4 AA2 8 ALA B 297 LEU B 301 1 O ILE B 300 N ALA B 134 SHEET 5 AA2 8 ALA B 259 GLN B 263 1 N VAL B 260 O LEU B 299 SHEET 6 AA2 8 ILE B 172 ASP B 176 1 N VAL B 175 O GLN B 263 SHEET 7 AA2 8 VAL B 195 LYS B 202 1 O MET B 196 N TYR B 174 SHEET 8 AA2 8 SER B 226 ILE B 231 1 O VAL B 227 N THR B 197 SHEET 1 AA3 8 ARG C 55 VAL C 57 0 SHEET 2 AA3 8 VAL C 17 ILE C 19 1 N TYR C 18 O ARG C 55 SHEET 3 AA3 8 VAL C 133 ASN C 136 1 O ILE C 135 N ILE C 19 SHEET 4 AA3 8 ALA C 297 LEU C 301 1 O ILE C 300 N ALA C 134 SHEET 5 AA3 8 ALA C 259 GLN C 263 1 N VAL C 260 O LEU C 299 SHEET 6 AA3 8 ILE C 172 ASP C 176 1 N VAL C 175 O GLN C 263 SHEET 7 AA3 8 VAL C 195 LYS C 202 1 O MET C 196 N TYR C 174 SHEET 8 AA3 8 SER C 226 ILE C 231 1 O VAL C 227 N THR C 197 LINK O ASP A 176 K K A 404 1555 1555 2.62 LINK OD1 ASP A 176 K K A 404 1555 1555 2.61 LINK OD1 ASP A 178 ZN ZN A 402 1555 1555 2.02 LINK O ASP A 178 K K A 404 1555 1555 2.59 LINK ND1 HIS A 180 ZN ZN A 402 1555 1555 2.11 LINK O HIS A 180 K K A 404 1555 1555 2.63 LINK O PHE A 189 K K A 403 1555 1555 2.59 LINK O THR A 192 K K A 403 1555 1555 2.65 LINK O VAL A 195 K K A 403 1555 1555 2.59 LINK OG SER A 199 K K A 404 1555 1555 2.64 LINK O LEU A 200 K K A 404 1555 1555 2.57 LINK O TYR A 225 K K A 403 1555 1555 2.62 LINK OD2 ASP A 267 ZN ZN A 402 1555 1555 1.96 LINK O42 M8G A 401 ZN ZN A 402 1555 1555 2.00 LINK N43 M8G A 401 ZN ZN A 402 1555 1555 2.52 LINK O45 M8G A 401 ZN ZN A 402 1555 1555 1.98 LINK K K A 403 O HOH A 517 1555 1555 2.61 LINK K K A 403 O HOH A 538 1555 1555 2.63 LINK O ASP B 176 K K B 404 1555 1555 2.62 LINK OD1 ASP B 176 K K B 404 1555 1555 2.59 LINK OD1 ASP B 178 ZN ZN B 402 1555 1555 2.01 LINK O ASP B 178 K K B 404 1555 1555 2.59 LINK ND1 HIS B 180 ZN ZN B 402 1555 1555 2.10 LINK O HIS B 180 K K B 404 1555 1555 2.64 LINK O PHE B 189 K K B 403 1555 1555 2.57 LINK O THR B 192 K K B 403 1555 1555 2.65 LINK O VAL B 195 K K B 403 1555 1555 2.59 LINK OG SER B 199 K K B 404 1555 1555 2.64 LINK O LEU B 200 K K B 404 1555 1555 2.60 LINK O TYR B 225 K K B 403 1555 1555 2.65 LINK OD2 ASP B 267 ZN ZN B 402 1555 1555 1.96 LINK O42 M8G B 401 ZN ZN B 402 1555 1555 2.02 LINK N43 M8G B 401 ZN ZN B 402 1555 1555 2.69 LINK O45 M8G B 401 ZN ZN B 402 1555 1555 1.98 LINK K K B 403 O HOH B 518 1555 1555 2.65 LINK O ASP C 176 K K C 404 1555 1555 2.63 LINK OD1 ASP C 176 K K C 404 1555 1555 2.61 LINK OD1 ASP C 178 ZN ZN C 402 1555 1555 1.99 LINK O ASP C 178 K K C 404 1555 1555 2.63 LINK ND1 HIS C 180 ZN ZN C 402 1555 1555 2.09 LINK O HIS C 180 K K C 404 1555 1555 2.61 LINK O PHE C 189 K K C 403 1555 1555 2.58 LINK O THR C 192 K K C 403 1555 1555 2.63 LINK O VAL C 195 K K C 403 1555 1555 2.63 LINK OG SER C 199 K K C 404 1555 1555 2.63 LINK O LEU C 200 K K C 404 1555 1555 2.61 LINK O TYR C 225 K K C 403 1555 1555 2.63 LINK OD2 ASP C 267 ZN ZN C 402 1555 1555 2.01 LINK O42 M8G C 401 ZN ZN C 402 1555 1555 2.02 LINK O45 M8G C 401 ZN ZN C 402 1555 1555 2.01 LINK K K C 403 O HOH C 506 1555 1555 2.59 CISPEP 1 PHE A 208 PRO A 209 0 -3.56 CISPEP 2 GLY A 341 PRO A 342 0 7.54 CISPEP 3 PHE B 208 PRO B 209 0 -1.79 CISPEP 4 GLY B 341 PRO B 342 0 6.70 CISPEP 5 PHE C 208 PRO C 209 0 -2.64 CISPEP 6 GLY C 341 PRO C 342 0 7.58 SITE 1 AC1 14 LYS A 33 TYR A 100 ASP A 101 HIS A 142 SITE 2 AC1 14 HIS A 143 GLY A 151 PHE A 152 ASP A 178 SITE 3 AC1 14 HIS A 180 ASP A 267 MET A 274 TYR A 306 SITE 4 AC1 14 ZN A 402 HOH A 522 SITE 1 AC2 4 ASP A 178 HIS A 180 ASP A 267 M8G A 401 SITE 1 AC3 6 PHE A 189 THR A 192 VAL A 195 TYR A 225 SITE 2 AC3 6 HOH A 517 HOH A 538 SITE 1 AC4 5 ASP A 176 ASP A 178 HIS A 180 SER A 199 SITE 2 AC4 5 LEU A 200 SITE 1 AC5 3 ALA A 68 HIS A 71 GOL B 405 SITE 1 AC6 7 SER A 215 VAL A 217 GLY A 218 LEU A 219 SITE 2 AC6 7 GOL A 407 ASP C 343 THR C 349 SITE 1 AC7 6 THR A 211 GLY A 212 ASP A 213 SER A 215 SITE 2 AC7 6 ASP A 216 GOL A 406 SITE 1 AC8 11 LYS B 33 ASP B 101 HIS B 142 HIS B 143 SITE 2 AC8 11 PHE B 152 ASP B 178 HIS B 180 ASP B 267 SITE 3 AC8 11 MET B 274 TYR B 306 ZN B 402 SITE 1 AC9 4 ASP B 178 HIS B 180 ASP B 267 M8G B 401 SITE 1 AD1 5 PHE B 189 THR B 192 VAL B 195 TYR B 225 SITE 2 AD1 5 HOH B 518 SITE 1 AD2 5 ASP B 176 ASP B 178 HIS B 180 SER B 199 SITE 2 AD2 5 LEU B 200 SITE 1 AD3 4 GOL A 405 GLY B 99 TYR B 100 ALA B 104 SITE 1 AD4 12 LYS C 33 ASP C 101 HIS C 142 HIS C 143 SITE 2 AD4 12 PHE C 152 ASP C 178 HIS C 180 PHE C 208 SITE 3 AD4 12 ASP C 267 MET C 274 TYR C 306 ZN C 402 SITE 1 AD5 4 ASP C 178 HIS C 180 ASP C 267 M8G C 401 SITE 1 AD6 5 PHE C 189 THR C 192 VAL C 195 TYR C 225 SITE 2 AD6 5 HOH C 506 SITE 1 AD7 5 ASP C 176 ASP C 178 HIS C 180 SER C 199 SITE 2 AD7 5 LEU C 200 CRYST1 87.915 90.950 93.067 90.00 94.10 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011375 0.000000 0.000815 0.00000 SCALE2 0.000000 0.010995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010772 0.00000