HEADER APOPTOSIS 26-MAR-19 6ODH TITLE BH3 DOMAIN SWAPPED DIMER OF A BAK FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2 HOMOLOGOUS ANTAGONIST/KILLER; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: RESIDUES 71-147; COMPND 5 SYNONYM: APOPTOSIS REGULATOR BAK,BCL-2-LIKE PROTEIN 7,BCL2-L-7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAK1, BAK, BCL2L7, CDN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BAK, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR L.-K.LIU REVDAT 2 11-OCT-23 6ODH 1 REMARK REVDAT 1 07-OCT-20 6ODH 0 JRNL AUTH H.DAI,L.-K.LIU,S.KAUFMANN JRNL TITL A BAK FRAGMENT THAT BINDS MITOCHONDRIAL LIPIDS AND RELEASES JRNL TITL 2 CYTOCHROME C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 18506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 1695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.5215 - 5.2592 0.90 2679 172 0.1902 0.2203 REMARK 3 2 5.2592 - 4.1772 0.91 2734 150 0.1976 0.2961 REMARK 3 3 4.1772 - 3.6500 0.90 2712 125 0.1846 0.2468 REMARK 3 4 3.6500 - 3.3166 0.91 2726 140 0.2255 0.2717 REMARK 3 5 3.3166 - 3.0791 0.93 2877 104 0.2493 0.2873 REMARK 3 6 3.0791 - 2.8977 0.95 2850 129 0.2469 0.2590 REMARK 3 7 2.8977 - 2.7526 0.95 2846 170 0.2524 0.3376 REMARK 3 8 2.7526 - 2.6329 0.94 2869 130 0.2503 0.3706 REMARK 3 9 2.6329 - 2.5316 0.95 2875 144 0.2520 0.3024 REMARK 3 10 2.5316 - 2.4442 0.95 2920 124 0.2661 0.3514 REMARK 3 11 2.4442 - 2.3678 0.95 2818 149 0.2607 0.3304 REMARK 3 12 2.3678 - 2.3002 0.94 2874 158 0.2866 0.3498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3850 REMARK 3 ANGLE : 0.693 5198 REMARK 3 CHIRALITY : 0.042 533 REMARK 3 PLANARITY : 0.004 649 REMARK 3 DIHEDRAL : 20.648 2229 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -18.4608 0.1186 12.5672 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.2701 REMARK 3 T33: 0.2480 T12: 0.0607 REMARK 3 T13: 0.0229 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.5875 L22: 4.8181 REMARK 3 L33: 3.5761 L12: 1.5622 REMARK 3 L13: 0.2737 L23: 0.8226 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: -0.1188 S13: 0.0713 REMARK 3 S21: -0.0998 S22: -0.1050 S23: 0.0860 REMARK 3 S31: -0.0814 S32: -0.0204 S33: -0.0340 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 72 OR RESID 74 REMARK 3 THROUGH 75 OR RESID 77 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 86 OR RESID 88 THROUGH 90 OR REMARK 3 (RESID 91 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 92 REMARK 3 THROUGH 93 OR RESID 95 THROUGH 97 OR REMARK 3 RESID 99 THROUGH 100 OR RESID 102 THROUGH REMARK 3 104 OR RESID 106 THROUGH 112 OR RESID 114 REMARK 3 THROUGH 119 OR RESID 121 THROUGH 136 OR REMARK 3 RESID 138 THROUGH 139 OR (RESID 140 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 141 THROUGH 143)) REMARK 3 SELECTION : (CHAIN B AND (RESID 72 OR RESID 74 REMARK 3 THROUGH 75 OR RESID 77 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 86 OR RESID 88 THROUGH 90 OR REMARK 3 (RESID 91 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 92 REMARK 3 THROUGH 93 OR RESID 95 THROUGH 97 OR REMARK 3 RESID 99 THROUGH 100 OR RESID 102 THROUGH REMARK 3 104 OR RESID 106 THROUGH 109 OR (RESID REMARK 3 110 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 111 THROUGH REMARK 3 112 OR RESID 114 THROUGH 119 OR RESID 121 REMARK 3 THROUGH 136 OR RESID 138 THROUGH 139 OR REMARK 3 (RESID 140 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 141 REMARK 3 THROUGH 143)) REMARK 3 ATOM PAIRS NUMBER : 1445 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 72 OR RESID 74 REMARK 3 THROUGH 75 OR RESID 77 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 86 OR RESID 88 THROUGH 90 OR REMARK 3 (RESID 91 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 92 REMARK 3 THROUGH 93 OR RESID 95 THROUGH 97 OR REMARK 3 RESID 99 THROUGH 100 OR RESID 102 THROUGH REMARK 3 104 OR RESID 106 THROUGH 112 OR RESID 114 REMARK 3 THROUGH 119 OR RESID 121 THROUGH 136 OR REMARK 3 RESID 138 THROUGH 139 OR (RESID 140 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 141 THROUGH 143)) REMARK 3 SELECTION : (CHAIN C AND (RESID 72 OR RESID 74 REMARK 3 THROUGH 75 OR RESID 77 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 86 OR RESID 88 THROUGH 93 OR REMARK 3 RESID 95 THROUGH 97 OR RESID 99 THROUGH REMARK 3 100 OR RESID 102 THROUGH 104 OR RESID 106 REMARK 3 THROUGH 109 OR (RESID 110 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 111 THROUGH 112 OR RESID 114 REMARK 3 THROUGH 119 OR RESID 121 THROUGH 136 OR REMARK 3 RESID 138 THROUGH 139 OR (RESID 140 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 141 THROUGH 143)) REMARK 3 ATOM PAIRS NUMBER : 1445 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 72 OR RESID 74 REMARK 3 THROUGH 75 OR RESID 77 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 86 OR RESID 88 THROUGH 90 OR REMARK 3 (RESID 91 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 92 REMARK 3 THROUGH 93 OR RESID 95 THROUGH 97 OR REMARK 3 RESID 99 THROUGH 100 OR RESID 102 THROUGH REMARK 3 104 OR RESID 106 THROUGH 112 OR RESID 114 REMARK 3 THROUGH 119 OR RESID 121 THROUGH 136 OR REMARK 3 RESID 138 THROUGH 139 OR (RESID 140 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 141 THROUGH 143)) REMARK 3 SELECTION : (CHAIN D AND (RESID 72 OR RESID 74 REMARK 3 THROUGH 75 OR RESID 77 THROUGH 86 OR REMARK 3 RESID 88 THROUGH 90 OR (RESID 91 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 92 THROUGH 93 OR REMARK 3 RESID 95 THROUGH 97 OR RESID 99 THROUGH REMARK 3 100 OR RESID 102 THROUGH 104 OR RESID 106 REMARK 3 THROUGH 112 OR RESID 114 THROUGH 119 OR REMARK 3 RESID 121 THROUGH 136 OR RESID 138 REMARK 3 THROUGH 143)) REMARK 3 ATOM PAIRS NUMBER : 1445 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 72 OR RESID 74 REMARK 3 THROUGH 75 OR RESID 77 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 86 OR RESID 88 THROUGH 90 OR REMARK 3 (RESID 91 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 92 REMARK 3 THROUGH 93 OR RESID 95 THROUGH 97 OR REMARK 3 RESID 99 THROUGH 100 OR RESID 102 THROUGH REMARK 3 104 OR RESID 106 THROUGH 112 OR RESID 114 REMARK 3 THROUGH 119 OR RESID 121 THROUGH 136 OR REMARK 3 RESID 138 THROUGH 139 OR (RESID 140 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 141 THROUGH 143)) REMARK 3 SELECTION : (CHAIN E AND (RESID 72 OR RESID 74 REMARK 3 THROUGH 75 OR RESID 77 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 86 OR RESID 88 THROUGH 90 OR REMARK 3 (RESID 91 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 92 REMARK 3 THROUGH 93 OR RESID 95 THROUGH 97 OR REMARK 3 RESID 99 THROUGH 100 OR RESID 102 THROUGH REMARK 3 104 OR RESID 106 THROUGH 109 OR (RESID REMARK 3 110 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 111 THROUGH REMARK 3 112 OR RESID 114 THROUGH 119 OR RESID 121 REMARK 3 THROUGH 136 OR RESID 138 THROUGH 139 OR REMARK 3 (RESID 140 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 141 REMARK 3 THROUGH 143)) REMARK 3 ATOM PAIRS NUMBER : 1445 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 5 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 72 OR RESID 74 REMARK 3 THROUGH 75 OR RESID 77 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 86 OR RESID 88 THROUGH 90 OR REMARK 3 (RESID 91 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 92 REMARK 3 THROUGH 93 OR RESID 95 THROUGH 97 OR REMARK 3 RESID 99 THROUGH 100 OR RESID 102 THROUGH REMARK 3 104 OR RESID 106 THROUGH 112 OR RESID 114 REMARK 3 THROUGH 119 OR RESID 121 THROUGH 136 OR REMARK 3 RESID 138 THROUGH 139 OR (RESID 140 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 141 THROUGH 143)) REMARK 3 SELECTION : (CHAIN F AND (RESID 72 OR RESID 74 REMARK 3 THROUGH 75 OR RESID 77 THROUGH 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 86 OR RESID 88 THROUGH 90 OR REMARK 3 (RESID 91 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 92 REMARK 3 THROUGH 93 OR RESID 95 THROUGH 97 OR REMARK 3 RESID 99 THROUGH 100 OR RESID 102 THROUGH REMARK 3 104 OR RESID 106 THROUGH 109 OR (RESID REMARK 3 110 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 111 THROUGH REMARK 3 112 OR RESID 114 THROUGH 119 OR RESID 121 REMARK 3 THROUGH 136 OR RESID 138 THROUGH 139 OR REMARK 3 (RESID 140 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 141 REMARK 3 THROUGH 143)) REMARK 3 ATOM PAIRS NUMBER : 1445 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ODH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTALS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18506 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.19800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 4U2V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 3350 AND 100 MM AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 147 REMARK 465 GLU A 148 REMARK 465 GLU A 149 REMARK 465 ASN A 150 REMARK 465 LEU A 151 REMARK 465 TYR A 152 REMARK 465 PHE A 153 REMARK 465 GLN A 154 REMARK 465 HIS B 145 REMARK 465 GLY B 146 REMARK 465 LEU B 147 REMARK 465 GLU B 148 REMARK 465 GLU B 149 REMARK 465 ASN B 150 REMARK 465 LEU B 151 REMARK 465 TYR B 152 REMARK 465 PHE B 153 REMARK 465 GLN B 154 REMARK 465 GLU C 149 REMARK 465 ASN C 150 REMARK 465 LEU C 151 REMARK 465 TYR C 152 REMARK 465 PHE C 153 REMARK 465 GLN C 154 REMARK 465 GLY D 146 REMARK 465 LEU D 147 REMARK 465 GLU D 148 REMARK 465 GLU D 149 REMARK 465 ASN D 150 REMARK 465 LEU D 151 REMARK 465 TYR D 152 REMARK 465 PHE D 153 REMARK 465 GLN D 154 REMARK 465 GLY E 146 REMARK 465 LEU E 147 REMARK 465 GLU E 148 REMARK 465 GLU E 149 REMARK 465 ASN E 150 REMARK 465 LEU E 151 REMARK 465 TYR E 152 REMARK 465 PHE E 153 REMARK 465 GLN E 154 REMARK 465 HIS F 145 REMARK 465 GLY F 146 REMARK 465 LEU F 147 REMARK 465 GLU F 148 REMARK 465 GLU F 149 REMARK 465 ASN F 150 REMARK 465 LEU F 151 REMARK 465 TYR F 152 REMARK 465 PHE F 153 REMARK 465 GLN F 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 110 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET C 71 CG SD CE REMARK 470 SER C 91 OG REMARK 470 GLU C 148 CG CD OE1 OE2 REMARK 470 ILE D 80 CG1 CG2 CD1 REMARK 470 TYR D 110 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU D 140 CG CD1 CD2 REMARK 470 HIS D 145 CG ND1 CD2 CE1 NE2 REMARK 470 GLN F 73 CG CD OE1 NE2 REMARK 470 ARG F 137 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP E 84 OH TYR F 89 2.14 REMARK 500 OH TYR E 136 O1S EPE E 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 101 74.26 53.74 REMARK 500 LEU C 147 -61.16 -109.30 REMARK 500 GLN E 101 72.46 46.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE E 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG F 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U2V RELATED DB: PDB DBREF 6ODH A 71 147 UNP Q16611 BAK_HUMAN 71 147 DBREF 6ODH B 71 147 UNP Q16611 BAK_HUMAN 71 147 DBREF 6ODH C 71 147 UNP Q16611 BAK_HUMAN 71 147 DBREF 6ODH D 71 147 UNP Q16611 BAK_HUMAN 71 147 DBREF 6ODH E 71 147 UNP Q16611 BAK_HUMAN 71 147 DBREF 6ODH F 71 147 UNP Q16611 BAK_HUMAN 71 147 SEQADV 6ODH GLU A 148 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLU A 149 UNP Q16611 EXPRESSION TAG SEQADV 6ODH ASN A 150 UNP Q16611 EXPRESSION TAG SEQADV 6ODH LEU A 151 UNP Q16611 EXPRESSION TAG SEQADV 6ODH TYR A 152 UNP Q16611 EXPRESSION TAG SEQADV 6ODH PHE A 153 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLN A 154 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLU B 148 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLU B 149 UNP Q16611 EXPRESSION TAG SEQADV 6ODH ASN B 150 UNP Q16611 EXPRESSION TAG SEQADV 6ODH LEU B 151 UNP Q16611 EXPRESSION TAG SEQADV 6ODH TYR B 152 UNP Q16611 EXPRESSION TAG SEQADV 6ODH PHE B 153 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLN B 154 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLU C 148 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLU C 149 UNP Q16611 EXPRESSION TAG SEQADV 6ODH ASN C 150 UNP Q16611 EXPRESSION TAG SEQADV 6ODH LEU C 151 UNP Q16611 EXPRESSION TAG SEQADV 6ODH TYR C 152 UNP Q16611 EXPRESSION TAG SEQADV 6ODH PHE C 153 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLN C 154 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLU D 148 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLU D 149 UNP Q16611 EXPRESSION TAG SEQADV 6ODH ASN D 150 UNP Q16611 EXPRESSION TAG SEQADV 6ODH LEU D 151 UNP Q16611 EXPRESSION TAG SEQADV 6ODH TYR D 152 UNP Q16611 EXPRESSION TAG SEQADV 6ODH PHE D 153 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLN D 154 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLU E 148 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLU E 149 UNP Q16611 EXPRESSION TAG SEQADV 6ODH ASN E 150 UNP Q16611 EXPRESSION TAG SEQADV 6ODH LEU E 151 UNP Q16611 EXPRESSION TAG SEQADV 6ODH TYR E 152 UNP Q16611 EXPRESSION TAG SEQADV 6ODH PHE E 153 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLN E 154 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLU F 148 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLU F 149 UNP Q16611 EXPRESSION TAG SEQADV 6ODH ASN F 150 UNP Q16611 EXPRESSION TAG SEQADV 6ODH LEU F 151 UNP Q16611 EXPRESSION TAG SEQADV 6ODH TYR F 152 UNP Q16611 EXPRESSION TAG SEQADV 6ODH PHE F 153 UNP Q16611 EXPRESSION TAG SEQADV 6ODH GLN F 154 UNP Q16611 EXPRESSION TAG SEQRES 1 A 84 MET GLY GLN VAL GLY ARG GLN LEU ALA ILE ILE GLY ASP SEQRES 2 A 84 ASP ILE ASN ARG ARG TYR ASP SER GLU PHE GLN THR MET SEQRES 3 A 84 LEU GLN HIS LEU GLN PRO THR ALA GLU ASN ALA TYR GLU SEQRES 4 A 84 TYR PHE THR LYS ILE ALA THR SER LEU PHE GLU SER GLY SEQRES 5 A 84 ILE ASN TRP GLY ARG VAL VAL ALA LEU LEU GLY PHE GLY SEQRES 6 A 84 TYR ARG LEU ALA LEU HIS VAL TYR GLN HIS GLY LEU GLU SEQRES 7 A 84 GLU ASN LEU TYR PHE GLN SEQRES 1 B 84 MET GLY GLN VAL GLY ARG GLN LEU ALA ILE ILE GLY ASP SEQRES 2 B 84 ASP ILE ASN ARG ARG TYR ASP SER GLU PHE GLN THR MET SEQRES 3 B 84 LEU GLN HIS LEU GLN PRO THR ALA GLU ASN ALA TYR GLU SEQRES 4 B 84 TYR PHE THR LYS ILE ALA THR SER LEU PHE GLU SER GLY SEQRES 5 B 84 ILE ASN TRP GLY ARG VAL VAL ALA LEU LEU GLY PHE GLY SEQRES 6 B 84 TYR ARG LEU ALA LEU HIS VAL TYR GLN HIS GLY LEU GLU SEQRES 7 B 84 GLU ASN LEU TYR PHE GLN SEQRES 1 C 84 MET GLY GLN VAL GLY ARG GLN LEU ALA ILE ILE GLY ASP SEQRES 2 C 84 ASP ILE ASN ARG ARG TYR ASP SER GLU PHE GLN THR MET SEQRES 3 C 84 LEU GLN HIS LEU GLN PRO THR ALA GLU ASN ALA TYR GLU SEQRES 4 C 84 TYR PHE THR LYS ILE ALA THR SER LEU PHE GLU SER GLY SEQRES 5 C 84 ILE ASN TRP GLY ARG VAL VAL ALA LEU LEU GLY PHE GLY SEQRES 6 C 84 TYR ARG LEU ALA LEU HIS VAL TYR GLN HIS GLY LEU GLU SEQRES 7 C 84 GLU ASN LEU TYR PHE GLN SEQRES 1 D 84 MET GLY GLN VAL GLY ARG GLN LEU ALA ILE ILE GLY ASP SEQRES 2 D 84 ASP ILE ASN ARG ARG TYR ASP SER GLU PHE GLN THR MET SEQRES 3 D 84 LEU GLN HIS LEU GLN PRO THR ALA GLU ASN ALA TYR GLU SEQRES 4 D 84 TYR PHE THR LYS ILE ALA THR SER LEU PHE GLU SER GLY SEQRES 5 D 84 ILE ASN TRP GLY ARG VAL VAL ALA LEU LEU GLY PHE GLY SEQRES 6 D 84 TYR ARG LEU ALA LEU HIS VAL TYR GLN HIS GLY LEU GLU SEQRES 7 D 84 GLU ASN LEU TYR PHE GLN SEQRES 1 E 84 MET GLY GLN VAL GLY ARG GLN LEU ALA ILE ILE GLY ASP SEQRES 2 E 84 ASP ILE ASN ARG ARG TYR ASP SER GLU PHE GLN THR MET SEQRES 3 E 84 LEU GLN HIS LEU GLN PRO THR ALA GLU ASN ALA TYR GLU SEQRES 4 E 84 TYR PHE THR LYS ILE ALA THR SER LEU PHE GLU SER GLY SEQRES 5 E 84 ILE ASN TRP GLY ARG VAL VAL ALA LEU LEU GLY PHE GLY SEQRES 6 E 84 TYR ARG LEU ALA LEU HIS VAL TYR GLN HIS GLY LEU GLU SEQRES 7 E 84 GLU ASN LEU TYR PHE GLN SEQRES 1 F 84 MET GLY GLN VAL GLY ARG GLN LEU ALA ILE ILE GLY ASP SEQRES 2 F 84 ASP ILE ASN ARG ARG TYR ASP SER GLU PHE GLN THR MET SEQRES 3 F 84 LEU GLN HIS LEU GLN PRO THR ALA GLU ASN ALA TYR GLU SEQRES 4 F 84 TYR PHE THR LYS ILE ALA THR SER LEU PHE GLU SER GLY SEQRES 5 F 84 ILE ASN TRP GLY ARG VAL VAL ALA LEU LEU GLY PHE GLY SEQRES 6 F 84 TYR ARG LEU ALA LEU HIS VAL TYR GLN HIS GLY LEU GLU SEQRES 7 F 84 GLU ASN LEU TYR PHE GLN HET SO4 A 201 5 HET EPE A 202 30 HET EPE A 203 30 HET SO4 B 201 5 HET EPE C 201 15 HET PEG D 201 7 HET EPE E 201 30 HET EPE E 202 30 HET PEG F 201 7 HETNAM SO4 SULFATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EPE HEPES FORMUL 7 SO4 2(O4 S 2-) FORMUL 8 EPE 5(C8 H18 N2 O4 S) FORMUL 12 PEG 2(C4 H10 O3) FORMUL 16 HOH *19(H2 O) HELIX 1 AA1 MET A 71 GLN A 101 1 31 HELIX 2 AA2 ASN A 106 SER A 121 1 16 HELIX 3 AA3 ASN A 124 HIS A 145 1 22 HELIX 4 AA4 GLY B 72 GLN B 101 1 30 HELIX 5 AA5 THR B 103 GLU B 120 1 18 HELIX 6 AA6 ASN B 124 GLN B 144 1 21 HELIX 7 AA7 MET C 71 GLN C 73 5 3 HELIX 8 AA8 VAL C 74 GLN C 101 1 28 HELIX 9 AA9 ASN C 106 SER C 121 1 16 HELIX 10 AB1 ASN C 124 GLY C 146 1 23 HELIX 11 AB2 GLY D 72 GLN D 101 1 30 HELIX 12 AB3 ASN D 106 SER D 121 1 16 HELIX 13 AB4 ASN D 124 GLN D 144 1 21 HELIX 14 AB5 GLY E 72 GLN E 101 1 30 HELIX 15 AB6 ASN E 106 SER E 121 1 16 HELIX 16 AB7 ASN E 124 HIS E 145 1 22 HELIX 17 AB8 GLY F 72 GLN F 101 1 30 HELIX 18 AB9 ASN F 106 GLU F 120 1 15 HELIX 19 AC1 ASN F 124 GLN F 144 1 21 SITE 1 AC1 3 GLY A 146 ASP D 84 ARG D 88 SITE 1 AC2 11 ILE A 123 ASN A 124 TRP A 125 HOH A 301 SITE 2 AC2 11 ASN B 86 TYR B 136 SO4 B 201 ALA C 107 SITE 3 AC2 11 ALA C 139 VAL C 142 TYR C 143 SITE 1 AC3 9 TYR A 136 ARG A 137 ILE B 123 ASN B 124 SITE 2 AC3 9 TRP B 125 VAL B 128 PHE E 111 LEU E 138 SITE 3 AC3 9 ALA E 139 SITE 1 AC4 2 EPE A 202 LEU B 132 SITE 1 AC5 4 THR A 112 TYR C 108 THR C 116 THR F 112 SITE 1 AC6 3 TRP C 125 LEU D 132 TYR D 136 SITE 1 AC7 9 ALA A 107 PHE A 111 ALA A 139 VAL A 142 SITE 2 AC7 9 TYR E 136 ILE F 123 ASN F 124 TRP F 125 SITE 3 AC7 9 VAL F 128 SITE 1 AC8 9 ALA D 107 ALA D 139 VAL D 142 TYR D 143 SITE 2 AC8 9 ILE E 123 ASN E 124 TRP E 125 ASN F 86 SITE 3 AC8 9 TYR F 136 SITE 1 AC9 1 GLU F 105 CRYST1 45.043 55.039 55.682 117.13 107.97 97.55 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022201 0.002944 0.010293 0.00000 SCALE2 0.000000 0.018328 0.011354 0.00000 SCALE3 0.000000 0.000000 0.022209 0.00000