HEADER HYDROLASE 27-MAR-19 6OE2 TITLE X-RAY STRUCTURE OF THE C-TERMINAL DOMAIN (277-440) OF PUTATIVE TITLE 2 CHITOBIASE FROM BACTEROIDES THETAIOTAOMICRON. NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM TARGET BTR324A. RE-REFINEMENT OF 3GGL WITH TITLE 4 CORRECT METAL MN REPLACING ZN. NEW METAL CONFIRMED WITH PIXE ANALYSIS TITLE 5 OF ORIGINAL SAMPLE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITOBIASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 280-440); COMPND 5 EC: 3.2.1.169; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: NAGJ_1, ERS852430_00185, SAMN02910322_00414; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC KEYWDS NESG, BTR324A, Q8A9F0_BACTN, BACTEROIDES THETAIOTAOMICRON, BT_0865, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, STRUCTURAL GENOMICS, PIXE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.H.SNELL,E.F.GARMAN,E.D.LOWE REVDAT 6 13-NOV-24 6OE2 1 REMARK REVDAT 5 15-NOV-23 6OE2 1 REMARK REVDAT 4 11-OCT-23 6OE2 1 REMARK REVDAT 3 22-JAN-20 6OE2 1 JRNL REVDAT 2 08-JAN-20 6OE2 1 REMARK REVDAT 1 25-DEC-19 6OE2 0 JRNL AUTH G.W.GRIME,O.B.ZELDIN,M.E.SNELL,E.D.LOWE,J.F.HUNT, JRNL AUTH 2 G.T.MONTELIONE,L.TONG,E.H.SNELL,E.F.GARMAN JRNL TITL HIGH-THROUGHPUT PIXE AS AN ESSENTIAL QUANTITATIVE ASSAY FOR JRNL TITL 2 ACCURATE METALLOPROTEIN STRUCTURAL ANALYSIS: DEVELOPMENT AND JRNL TITL 3 APPLICATION. JRNL REF J.AM.CHEM.SOC. V. 142 185 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 31794207 JRNL DOI 10.1021/JACS.9B09186 REMARK 0 REMARK 0 ORIGINAL DATA REFERENCE 1 REMARK 0 PDB ID: 3ggl REMARK 0 AUTH A.KUZIN,H.NEELY,R.SEETHARAMAN,D.LEE,C.CICCOSANTI,E.L.FOOTE, REMARK 0 AUTH 2 H.JANJUA,R.XIAO,R.NAIR,B.ROST,T.ACTON,J.K.EVERETT, REMARK 0 AUTH 3 G.T.MONTELIONE,L.TONG,J.HUNT REMARK 0 TITL NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BTR324A REMARK 0 REF TO BE PUBLISHED REMARK 0 REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0241 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 4201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.000 REMARK 3 FREE R VALUE TEST SET COUNT : 414 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 298 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1243 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.401 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.322 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.275 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1274 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1169 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1725 ; 1.695 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2718 ; 1.271 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 160 ;11.069 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;34.989 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 208 ;19.426 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.910 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 172 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1434 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 260 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 643 ; 2.377 ; 5.470 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 642 ; 2.374 ; 5.471 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 802 ; 3.701 ; 8.212 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 803 ; 3.701 ; 8.213 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 630 ; 2.454 ; 5.758 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 631 ; 2.453 ; 5.765 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 924 ; 3.920 ; 8.534 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 280 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): -30.7400 -13.6500 -5.4930 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.0422 REMARK 3 T33: 0.2959 T12: -0.0549 REMARK 3 T13: -0.1024 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 7.8727 L22: 2.6579 REMARK 3 L33: 6.2750 L12: -1.6198 REMARK 3 L13: 4.0712 L23: -1.7302 REMARK 3 S TENSOR REMARK 3 S11: -0.4087 S12: -0.1205 S13: 1.2674 REMARK 3 S21: 0.4040 S22: -0.1988 S23: -0.6814 REMARK 3 S31: -0.3331 S32: 0.2188 S33: 0.6075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6OE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4644 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 0.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 3F2Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.75 M MAGNESIUM FORMATE, 0.1 M BIS REMARK 280 -TRIS, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.99467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.99733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.99733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.99467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 441 REMARK 465 GLU A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 465 HIS A 446 REMARK 465 HIS A 447 REMARK 465 HIS A 448 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 295 96.14 47.85 REMARK 500 LYS A 296 34.65 -98.57 REMARK 500 TRP A 299 129.87 34.76 REMARK 500 VAL A 301 115.99 -39.29 REMARK 500 SER A 303 124.34 175.19 REMARK 500 SER A 310 -86.23 -151.86 REMARK 500 ALA A 333 142.81 -34.94 REMARK 500 GLN A 352 131.83 178.93 REMARK 500 PRO A 371 42.23 -80.25 REMARK 500 ASN A 383 50.87 70.66 REMARK 500 VAL A 384 -68.80 -151.86 REMARK 500 ASN A 396 41.39 -79.86 REMARK 500 ILE A 439 63.23 60.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 314 GLY A 315 -141.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 321 O REMARK 620 2 ASP A 324 OD1 58.5 REMARK 620 3 ASP A 326 O 151.2 92.7 REMARK 620 4 THR A 329 O 93.8 133.2 109.2 REMARK 620 5 ARG A 430 O 79.5 123.3 120.1 81.0 REMARK 620 6 GLU A 431 OE2 77.3 53.1 83.9 163.5 83.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GGL RELATED DB: PDB DBREF1 6OE2 A 280 440 UNP A0A173R4M5_BACT4 DBREF2 6OE2 A A0A173R4M5 280 440 SEQADV 6OE2 LEU A 441 UNP A0A173R4M EXPRESSION TAG SEQADV 6OE2 GLU A 442 UNP A0A173R4M EXPRESSION TAG SEQADV 6OE2 HIS A 443 UNP A0A173R4M EXPRESSION TAG SEQADV 6OE2 HIS A 444 UNP A0A173R4M EXPRESSION TAG SEQADV 6OE2 HIS A 445 UNP A0A173R4M EXPRESSION TAG SEQADV 6OE2 HIS A 446 UNP A0A173R4M EXPRESSION TAG SEQADV 6OE2 HIS A 447 UNP A0A173R4M EXPRESSION TAG SEQADV 6OE2 HIS A 448 UNP A0A173R4M EXPRESSION TAG SEQRES 1 A 169 ASP THR TYR THR GLY PHE CYS ILE ILE LYS GLU GLY THR SEQRES 2 A 169 LYS ILE SER LYS SER GLY TRP GLU VAL LEU SER PHE THR SEQRES 3 A 169 THR GLN GLU ALA SER GLY GLU GLY ALA GLY ASN GLY LEU SEQRES 4 A 169 ALA LYS CYS LEU ILE ASP GLY ASP THR GLU THR PHE TRP SEQRES 5 A 169 HIS ALA LYS TRP GLN GLY GLY SER ASP PRO LEU PRO TYR SEQRES 6 A 169 ASP ILE VAL ILE ASP MSE LYS GLN ASN ILE GLN ILE ALA SEQRES 7 A 169 GLN VAL GLU LEU LEU PRO ARG GLY ARG GLY SER ASN ASN SEQRES 8 A 169 PRO ILE LYS VAL VAL GLU PHE ALA ALA SER GLU ASP ASN SEQRES 9 A 169 VAL ASN TRP THR PRO ILE GLY ARG PHE GLY PHE THR ASN SEQRES 10 A 169 GLN ASP ALA ALA LEU GLU TYR TYR VAL LYS SER ILE LYS SEQRES 11 A 169 ALA ARG TYR ILE ARG LEU THR ILE PRO ASP ASP GLY GLY SEQRES 12 A 169 ASN SER THR VAL ALA ALA ILE ARG GLU LEU ASP VAL LYS SEQRES 13 A 169 GLY THR ILE ILE ASN LEU GLU HIS HIS HIS HIS HIS HIS MODRES 6OE2 MSE A 350 MET MODIFIED RESIDUE HET MSE A 350 8 HET PEG A 501 7 HET MN A 502 1 HETNAM MSE SELENOMETHIONINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MN MANGANESE (II) ION FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 PEG C4 H10 O3 FORMUL 3 MN MN 2+ FORMUL 4 HOH *(H2 O) HELIX 1 AA1 LEU A 318 ASP A 324 5 7 SHEET 1 AA1 3 THR A 292 LYS A 293 0 SHEET 2 AA1 3 ALA A 428 THR A 437 -1 O GLY A 436 N THR A 292 SHEET 3 AA1 3 TRP A 331 HIS A 332 -1 N TRP A 331 O ILE A 429 SHEET 1 AA2 4 TRP A 331 HIS A 332 0 SHEET 2 AA2 4 ALA A 428 THR A 437 -1 O ILE A 429 N TRP A 331 SHEET 3 AA2 4 TYR A 344 PRO A 363 -1 N ALA A 357 O LYS A 435 SHEET 4 AA2 4 GLU A 300 PHE A 304 -1 N SER A 303 O VAL A 347 SHEET 1 AA3 3 GLU A 300 PHE A 304 0 SHEET 2 AA3 3 TYR A 344 PRO A 363 -1 O VAL A 347 N SER A 303 SHEET 3 AA3 3 LEU A 401 TYR A 403 -1 O LEU A 401 N LEU A 361 SHEET 1 AA4 5 LEU A 401 TYR A 403 0 SHEET 2 AA4 5 TYR A 344 PRO A 363 -1 N LEU A 361 O LEU A 401 SHEET 3 AA4 5 ILE A 408 ILE A 417 -1 O ILE A 417 N TYR A 344 SHEET 4 AA4 5 VAL A 374 SER A 380 -1 N GLU A 376 O THR A 416 SHEET 5 AA4 5 THR A 387 GLY A 393 -1 O PHE A 392 N VAL A 375 SHEET 1 AA5 6 THR A 387 GLY A 393 0 SHEET 2 AA5 6 VAL A 374 SER A 380 -1 N VAL A 375 O PHE A 392 SHEET 3 AA5 6 ILE A 408 ILE A 417 -1 O THR A 416 N GLU A 376 SHEET 4 AA5 6 TYR A 344 PRO A 363 -1 N TYR A 344 O ILE A 417 SHEET 5 AA5 6 ALA A 428 THR A 437 -1 O LYS A 435 N ALA A 357 SHEET 6 AA5 6 THR A 292 LYS A 293 -1 N THR A 292 O GLY A 436 SSBOND 1 CYS A 286 CYS A 286 1555 4555 2.65 LINK C ASP A 349 N MSE A 350 1555 1555 1.34 LINK C MSE A 350 N LYS A 351 1555 1555 1.34 LINK O CYS A 321 MN MN A 502 1555 1555 2.36 LINK OD1 ASP A 324 MN MN A 502 1555 1555 2.62 LINK O ASP A 326 MN MN A 502 1555 1555 1.83 LINK O THR A 329 MN MN A 502 1555 1555 1.92 LINK O ARG A 430 MN MN A 502 1555 1555 2.44 LINK OE2 GLU A 431 MN MN A 502 1555 1555 2.36 CISPEP 1 LEU A 342 PRO A 343 0 -3.45 SITE 1 AC1 4 LYS A 293 GLU A 360 GLU A 402 LYS A 435 SITE 1 AC2 7 CYS A 321 ASP A 324 ASP A 326 THR A 327 SITE 2 AC2 7 THR A 329 ARG A 430 GLU A 431 CRYST1 86.860 86.860 50.992 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011513 0.006647 0.000000 0.00000 SCALE2 0.000000 0.013294 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019611 0.00000