HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 28-MAR-19 6OEX TITLE CRYSTAL STRUCTURE OF TRYPANOTHIONE REDUCTASE FROM TRYPANOSOMA BRUCEI TITLE 2 IN COMPLEX WITH INHIBITOR 3-(2-{1-[2-(PIPERIDIN-4-YL)ETHYL]-1H-INDOL- TITLE 3 5-YL}-5-[1-(PYRROLIDIN-1-YL)CYCLOHEXYL]-1,3- THIAZOL-4-YL)-N-(2,2,2- TITLE 4 TRIFLUOROETHYL)PROP-2-YN-1-AMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPANOTHIONE REDUCTASE; COMPND 3 CHAIN: B, A; COMPND 4 EC: 1.8.1.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI (STRAIN 927/4 SOURCE 3 GUTAT10.1); SOURCE 4 ORGANISM_TAXID: 185431; SOURCE 5 STRAIN: 927/4 GUTAT10.1; SOURCE 6 GENE: TB10.406.0520; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3ATBTRYR KEYWDS TRYPANOSOMA, TRYPANOTHIONE, INHIBITOR, SLEEPING SICKNESS, KEYWDS 2 OXIDOREDUCTASE, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.HALGAS,R.DE GASPARO,D.HARANGOZO,R.L.KRAUTH-SIEGEL,F.DIEDERICH, AUTHOR 2 E.F.PAI REVDAT 5 11-OCT-23 6OEX 1 REMARK REVDAT 4 08-JAN-20 6OEX 1 REMARK REVDAT 3 11-SEP-19 6OEX 1 JRNL REVDAT 2 28-AUG-19 6OEX 1 JRNL REVDAT 1 31-JUL-19 6OEX 0 JRNL AUTH R.DE GASPARO,O.HALGAS,D.HARANGOZO,M.KAISER,E.F.PAI, JRNL AUTH 2 R.L.KRAUTH-SIEGEL,F.DIEDERICH JRNL TITL TARGETING A LARGE ACTIVE SITE: STRUCTURE-BASED DESIGN OF JRNL TITL 2 NANOMOLAR INHIBITORS OF TRYPANOSOMA BRUCEI TRYPANOTHIONE JRNL TITL 3 REDUCTASE. JRNL REF CHEMISTRY V. 25 11416 2019 JRNL REFN ISSN 0947-6539 JRNL PMID 31407832 JRNL DOI 10.1002/CHEM.201901664 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 88365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 4393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.0624 - 6.5219 0.99 3172 164 0.2054 0.2013 REMARK 3 2 6.5219 - 5.1778 1.00 3015 169 0.2132 0.1991 REMARK 3 3 5.1778 - 4.5236 1.00 2955 165 0.1510 0.1588 REMARK 3 4 4.5236 - 4.1102 1.00 2955 178 0.1419 0.1501 REMARK 3 5 4.1102 - 3.8156 1.00 2963 119 0.1432 0.1612 REMARK 3 6 3.8156 - 3.5907 1.00 2928 153 0.1528 0.1619 REMARK 3 7 3.5907 - 3.4109 1.00 2926 136 0.1487 0.1693 REMARK 3 8 3.4109 - 3.2625 1.00 2936 143 0.1671 0.1765 REMARK 3 9 3.2625 - 3.1369 1.00 2900 153 0.1706 0.1960 REMARK 3 10 3.1369 - 3.0286 1.00 2883 153 0.1651 0.2169 REMARK 3 11 3.0286 - 2.9339 1.00 2882 162 0.1780 0.1950 REMARK 3 12 2.9339 - 2.8501 1.00 2871 156 0.1827 0.1944 REMARK 3 13 2.8501 - 2.7750 1.00 2910 143 0.1739 0.2251 REMARK 3 14 2.7750 - 2.7073 1.00 2862 162 0.1707 0.1851 REMARK 3 15 2.7073 - 2.6458 1.00 2866 177 0.1791 0.2042 REMARK 3 16 2.6458 - 2.5895 1.00 2889 141 0.1753 0.2195 REMARK 3 17 2.5895 - 2.5377 1.00 2893 136 0.1858 0.2005 REMARK 3 18 2.5377 - 2.4898 1.00 2859 140 0.1905 0.2322 REMARK 3 19 2.4898 - 2.4453 1.00 2881 138 0.1852 0.2426 REMARK 3 20 2.4453 - 2.4039 1.00 2845 158 0.1988 0.2558 REMARK 3 21 2.4039 - 2.3651 1.00 2891 146 0.1922 0.2632 REMARK 3 22 2.3651 - 2.3287 1.00 2869 149 0.2027 0.2328 REMARK 3 23 2.3287 - 2.2945 1.00 2853 153 0.2125 0.2307 REMARK 3 24 2.2945 - 2.2622 1.00 2848 178 0.2181 0.2473 REMARK 3 25 2.2622 - 2.2316 0.66 1891 108 0.2309 0.2231 REMARK 3 26 2.2316 - 2.2026 0.99 2806 143 0.2196 0.2425 REMARK 3 27 2.2026 - 2.1751 0.95 2696 146 0.2218 0.2623 REMARK 3 28 2.1751 - 2.1489 0.87 2516 117 0.2448 0.2693 REMARK 3 29 2.1489 - 2.1239 0.79 2251 110 0.2613 0.2534 REMARK 3 30 2.1239 - 2.1000 0.69 1960 97 0.2564 0.3065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7821 REMARK 3 ANGLE : 0.622 10644 REMARK 3 CHIRALITY : 0.045 1189 REMARK 3 PLANARITY : 0.003 1385 REMARK 3 DIHEDRAL : 15.389 4678 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -12.4489 -31.9354 -49.5888 REMARK 3 T TENSOR REMARK 3 T11: 0.3262 T22: 0.2668 REMARK 3 T33: 0.2634 T12: -0.0521 REMARK 3 T13: 0.0265 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.8196 L22: 0.3447 REMARK 3 L33: 0.5571 L12: 0.2131 REMARK 3 L13: 0.4308 L23: 0.2207 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: -0.1176 S13: -0.1241 REMARK 3 S21: 0.1159 S22: -0.0739 S23: 0.0269 REMARK 3 S31: 0.1194 S32: -0.1702 S33: 0.0092 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240526. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NEV REMARK 200 REMARK 200 REMARK: YELLOWISH TETRAGONAL BIPYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROL OF PROTEIN WERE MIXED WITH 2 REMARK 280 MICROL OF WELL SOLUTION (500 MICROL; 0.1 M HEPES, PH 7.5, 2.2 M REMARK 280 (NH4)2SO4). CRYSTALS GREW WITHIN 2 WEEKS., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.08500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 58.59500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 58.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 168.12750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 58.59500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 58.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.04250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 58.59500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 168.12750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 58.59500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.04250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 112.08500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 490 REMARK 465 ASN B 491 REMARK 465 LEU B 492 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 489 REMARK 465 SER A 490 REMARK 465 ASN A 491 REMARK 465 LEU A 492 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 792 O HOH A 865 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 12 51.08 -92.77 REMARK 500 TYR B 45 -72.46 69.69 REMARK 500 VAL B 55 39.98 -142.94 REMARK 500 ALA B 159 54.23 -149.37 REMARK 500 ARG B 331 -104.95 -112.99 REMARK 500 ASN B 352 47.74 34.01 REMARK 500 PHE B 367 50.72 -91.59 REMARK 500 ALA A 12 57.32 -95.17 REMARK 500 TYR A 45 -69.02 67.71 REMARK 500 VAL A 55 46.92 -143.88 REMARK 500 ASP A 84 94.27 -63.44 REMARK 500 ALA A 159 53.79 -150.09 REMARK 500 ASN A 223 -163.83 -110.62 REMARK 500 ARG A 331 -106.94 -95.09 REMARK 500 ASN A 352 37.08 34.66 REMARK 500 PHE A 367 49.97 -89.97 REMARK 500 SER A 406 62.71 -115.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M9Y B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M9Y A 503 DBREF 6OEX B 1 492 UNP Q389T8 Q389T8_TRYB2 1 492 DBREF 6OEX A 1 492 UNP Q389T8 Q389T8_TRYB2 1 492 SEQADV 6OEX GLY B -2 UNP Q389T8 EXPRESSION TAG SEQADV 6OEX SER B -1 UNP Q389T8 EXPRESSION TAG SEQADV 6OEX HIS B 0 UNP Q389T8 EXPRESSION TAG SEQADV 6OEX GLY A -2 UNP Q389T8 EXPRESSION TAG SEQADV 6OEX SER A -1 UNP Q389T8 EXPRESSION TAG SEQADV 6OEX HIS A 0 UNP Q389T8 EXPRESSION TAG SEQRES 1 B 495 GLY SER HIS MET SER LYS ALA PHE ASP LEU VAL VAL ILE SEQRES 2 B 495 GLY ALA GLY SER GLY GLY LEU GLU ALA GLY TRP ASN ALA SEQRES 3 B 495 ALA THR LEU TYR GLY LYS ARG VAL ALA VAL VAL ASP VAL SEQRES 4 B 495 GLN THR SER HIS GLY PRO PRO PHE TYR ALA ALA LEU GLY SEQRES 5 B 495 GLY THR CYS VAL ASN VAL GLY CYS VAL PRO LYS LYS LEU SEQRES 6 B 495 MET VAL THR GLY ALA GLN TYR MET ASP HIS LEU ARG GLU SEQRES 7 B 495 SER ALA GLY PHE GLY TRP GLU PHE ASP GLY SER SER VAL SEQRES 8 B 495 LYS ALA ASN TRP LYS LYS LEU ILE ALA ALA LYS ASN GLU SEQRES 9 B 495 ALA VAL LEU ASP ILE ASN LYS SER TYR GLU GLY MET PHE SEQRES 10 B 495 ASN ASP THR GLU GLY LEU ASP PHE PHE LEU GLY TRP GLY SEQRES 11 B 495 SER LEU GLU SER LYS ASN VAL VAL VAL VAL ARG GLU THR SEQRES 12 B 495 ALA ASP PRO LYS SER ALA VAL LYS GLU ARG LEU GLN ALA SEQRES 13 B 495 ASP HIS ILE LEU LEU ALA THR GLY SER TRP PRO GLN MET SEQRES 14 B 495 PRO ALA ILE PRO GLY ILE GLU HIS CYS ILE SER SER ASN SEQRES 15 B 495 GLU ALA PHE TYR LEU PRO GLU PRO PRO ARG ARG VAL LEU SEQRES 16 B 495 THR VAL GLY GLY GLY PHE ILE SER VAL GLU PHE ALA GLY SEQRES 17 B 495 ILE PHE ASN ALA TYR LYS PRO PRO GLY GLY LYS VAL THR SEQRES 18 B 495 LEU CYS TYR ARG ASN ASN LEU ILE LEU ARG GLY PHE ASP SEQRES 19 B 495 GLU THR ILE ARG GLU GLU VAL THR LYS GLN LEU THR ALA SEQRES 20 B 495 ASN GLY ILE GLU ILE MET THR ASN GLU ASN PRO ALA LYS SEQRES 21 B 495 VAL SER LEU ASN THR ASP GLY SER LYS HIS VAL THR PHE SEQRES 22 B 495 GLU SER GLY LYS THR LEU ASP VAL ASP VAL VAL MET MET SEQRES 23 B 495 ALA ILE GLY ARG ILE PRO ARG THR ASN ASP LEU GLN LEU SEQRES 24 B 495 GLY ASN VAL GLY VAL LYS LEU THR PRO LYS GLY GLY VAL SEQRES 25 B 495 GLN VAL ASP GLU PHE SER ARG THR ASN VAL PRO ASN ILE SEQRES 26 B 495 TYR ALA ILE GLY ASP ILE THR ASP ARG LEU MET LEU THR SEQRES 27 B 495 PRO VAL ALA ILE ASN GLU GLY ALA ALA LEU VAL ASP THR SEQRES 28 B 495 VAL PHE GLY ASN LYS PRO ARG LYS THR ASP HIS THR ARG SEQRES 29 B 495 VAL ALA SER ALA VAL PHE SER ILE PRO PRO ILE GLY THR SEQRES 30 B 495 CYS GLY LEU ILE GLU GLU VAL ALA ALA LYS GLU PHE GLU SEQRES 31 B 495 LYS VAL ALA VAL TYR MET SER SER PHE THR PRO LEU MET SEQRES 32 B 495 HIS ASN ILE SER GLY SER LYS TYR LYS LYS PHE VAL ALA SEQRES 33 B 495 LYS ILE VAL THR ASN HIS SER ASP GLY THR VAL LEU GLY SEQRES 34 B 495 VAL HIS LEU LEU GLY ASP GLY ALA PRO GLU ILE ILE GLN SEQRES 35 B 495 ALA VAL GLY VAL CYS LEU ARG LEU ASN ALA LYS ILE SER SEQRES 36 B 495 ASP PHE TYR ASN THR ILE GLY VAL HIS PRO THR SER ALA SEQRES 37 B 495 GLU GLU LEU CYS SER MET ARG THR PRO SER TYR TYR TYR SEQRES 38 B 495 VAL LYS GLY GLU LYS MET GLU LYS LEU PRO ASP SER ASN SEQRES 39 B 495 LEU SEQRES 1 A 495 GLY SER HIS MET SER LYS ALA PHE ASP LEU VAL VAL ILE SEQRES 2 A 495 GLY ALA GLY SER GLY GLY LEU GLU ALA GLY TRP ASN ALA SEQRES 3 A 495 ALA THR LEU TYR GLY LYS ARG VAL ALA VAL VAL ASP VAL SEQRES 4 A 495 GLN THR SER HIS GLY PRO PRO PHE TYR ALA ALA LEU GLY SEQRES 5 A 495 GLY THR CYS VAL ASN VAL GLY CYS VAL PRO LYS LYS LEU SEQRES 6 A 495 MET VAL THR GLY ALA GLN TYR MET ASP HIS LEU ARG GLU SEQRES 7 A 495 SER ALA GLY PHE GLY TRP GLU PHE ASP GLY SER SER VAL SEQRES 8 A 495 LYS ALA ASN TRP LYS LYS LEU ILE ALA ALA LYS ASN GLU SEQRES 9 A 495 ALA VAL LEU ASP ILE ASN LYS SER TYR GLU GLY MET PHE SEQRES 10 A 495 ASN ASP THR GLU GLY LEU ASP PHE PHE LEU GLY TRP GLY SEQRES 11 A 495 SER LEU GLU SER LYS ASN VAL VAL VAL VAL ARG GLU THR SEQRES 12 A 495 ALA ASP PRO LYS SER ALA VAL LYS GLU ARG LEU GLN ALA SEQRES 13 A 495 ASP HIS ILE LEU LEU ALA THR GLY SER TRP PRO GLN MET SEQRES 14 A 495 PRO ALA ILE PRO GLY ILE GLU HIS CYS ILE SER SER ASN SEQRES 15 A 495 GLU ALA PHE TYR LEU PRO GLU PRO PRO ARG ARG VAL LEU SEQRES 16 A 495 THR VAL GLY GLY GLY PHE ILE SER VAL GLU PHE ALA GLY SEQRES 17 A 495 ILE PHE ASN ALA TYR LYS PRO PRO GLY GLY LYS VAL THR SEQRES 18 A 495 LEU CYS TYR ARG ASN ASN LEU ILE LEU ARG GLY PHE ASP SEQRES 19 A 495 GLU THR ILE ARG GLU GLU VAL THR LYS GLN LEU THR ALA SEQRES 20 A 495 ASN GLY ILE GLU ILE MET THR ASN GLU ASN PRO ALA LYS SEQRES 21 A 495 VAL SER LEU ASN THR ASP GLY SER LYS HIS VAL THR PHE SEQRES 22 A 495 GLU SER GLY LYS THR LEU ASP VAL ASP VAL VAL MET MET SEQRES 23 A 495 ALA ILE GLY ARG ILE PRO ARG THR ASN ASP LEU GLN LEU SEQRES 24 A 495 GLY ASN VAL GLY VAL LYS LEU THR PRO LYS GLY GLY VAL SEQRES 25 A 495 GLN VAL ASP GLU PHE SER ARG THR ASN VAL PRO ASN ILE SEQRES 26 A 495 TYR ALA ILE GLY ASP ILE THR ASP ARG LEU MET LEU THR SEQRES 27 A 495 PRO VAL ALA ILE ASN GLU GLY ALA ALA LEU VAL ASP THR SEQRES 28 A 495 VAL PHE GLY ASN LYS PRO ARG LYS THR ASP HIS THR ARG SEQRES 29 A 495 VAL ALA SER ALA VAL PHE SER ILE PRO PRO ILE GLY THR SEQRES 30 A 495 CYS GLY LEU ILE GLU GLU VAL ALA ALA LYS GLU PHE GLU SEQRES 31 A 495 LYS VAL ALA VAL TYR MET SER SER PHE THR PRO LEU MET SEQRES 32 A 495 HIS ASN ILE SER GLY SER LYS TYR LYS LYS PHE VAL ALA SEQRES 33 A 495 LYS ILE VAL THR ASN HIS SER ASP GLY THR VAL LEU GLY SEQRES 34 A 495 VAL HIS LEU LEU GLY ASP GLY ALA PRO GLU ILE ILE GLN SEQRES 35 A 495 ALA VAL GLY VAL CYS LEU ARG LEU ASN ALA LYS ILE SER SEQRES 36 A 495 ASP PHE TYR ASN THR ILE GLY VAL HIS PRO THR SER ALA SEQRES 37 A 495 GLU GLU LEU CYS SER MET ARG THR PRO SER TYR TYR TYR SEQRES 38 A 495 VAL LYS GLY GLU LYS MET GLU LYS LEU PRO ASP SER ASN SEQRES 39 A 495 LEU HET FAD B 501 53 HET EPE B 502 15 HET SO4 B 503 5 HET SO4 B 504 5 HET M9Y B 505 42 HET FAD A 501 53 HET EPE A 502 15 HET M9Y A 503 42 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM SO4 SULFATE ION HETNAM M9Y 3-(2-{1-[2-(PIPERIDIN-4-YL)ETHYL]-1H-INDOL-5-YL}-5-[1- HETNAM 2 M9Y (PYRROLIDIN-1-YL)CYCLOHEXYL]-1,3-THIAZOL-4-YL)-N-(2,2, HETNAM 3 M9Y 2-TRIFLUOROETHYL)PROP-2-YN-1-AMINE HETSYN EPE HEPES FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 EPE 2(C8 H18 N2 O4 S) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 M9Y 2(C33 H42 F3 N5 S) FORMUL 11 HOH *563(H2 O) HELIX 1 AA1 GLY B 13 LEU B 26 1 14 HELIX 2 AA2 GLY B 49 GLY B 56 1 8 HELIX 3 AA3 GLY B 56 SER B 76 1 21 HELIX 4 AA4 ALA B 77 PHE B 79 5 3 HELIX 5 AA5 ASP B 84 VAL B 88 5 5 HELIX 6 AA6 ASN B 91 THR B 117 1 27 HELIX 7 AA7 GLY B 171 CYS B 175 5 5 HELIX 8 AA8 SER B 177 PHE B 182 1 6 HELIX 9 AA9 GLY B 197 LYS B 211 1 15 HELIX 10 AB1 ASP B 231 ASN B 245 1 15 HELIX 11 AB2 GLY B 326 ASP B 330 5 5 HELIX 12 AB3 LEU B 334 GLY B 351 1 18 HELIX 13 AB4 ILE B 378 PHE B 386 1 9 HELIX 14 AB5 PRO B 398 GLY B 405 1 8 HELIX 15 AB6 GLY B 433 LEU B 447 1 15 HELIX 16 AB7 LYS B 450 ASN B 456 1 7 HELIX 17 AB8 SER B 464 SER B 470 5 7 HELIX 18 AB9 GLY A 13 LEU A 26 1 14 HELIX 19 AC1 GLY A 49 GLY A 56 1 8 HELIX 20 AC2 GLY A 56 SER A 76 1 21 HELIX 21 AC3 ALA A 77 PHE A 79 5 3 HELIX 22 AC4 ASP A 84 VAL A 88 5 5 HELIX 23 AC5 ASN A 91 THR A 117 1 27 HELIX 24 AC6 GLY A 171 CYS A 175 5 5 HELIX 25 AC7 SER A 177 PHE A 182 1 6 HELIX 26 AC8 GLY A 197 LYS A 211 1 15 HELIX 27 AC9 ASP A 231 ASN A 245 1 15 HELIX 28 AD1 THR A 291 GLN A 295 5 5 HELIX 29 AD2 GLY A 326 ASP A 330 5 5 HELIX 30 AD3 LEU A 334 GLY A 351 1 18 HELIX 31 AD4 ILE A 378 PHE A 386 1 9 HELIX 32 AD5 PRO A 398 ILE A 403 5 6 HELIX 33 AD6 GLY A 433 LEU A 447 1 15 HELIX 34 AD7 LYS A 450 ASN A 456 1 7 HELIX 35 AD8 SER A 464 SER A 470 5 7 SHEET 1 AA1 4 ALA B 4 PHE B 5 0 SHEET 2 AA1 4 VAL B 147 ALA B 153 1 O GLN B 152 N PHE B 5 SHEET 3 AA1 4 VAL B 134 ARG B 138 -1 N VAL B 137 O LYS B 148 SHEET 4 AA1 4 TRP B 126 SER B 131 -1 N TRP B 126 O ARG B 138 SHEET 1 AA2 5 LEU B 120 LEU B 124 0 SHEET 2 AA2 5 VAL B 31 ASP B 35 1 N VAL B 33 O PHE B 123 SHEET 3 AA2 5 LEU B 7 ILE B 10 1 N VAL B 9 O ALA B 32 SHEET 4 AA2 5 ILE B 156 LEU B 158 1 O LEU B 157 N VAL B 8 SHEET 5 AA2 5 ILE B 322 ALA B 324 1 O TYR B 323 N LEU B 158 SHEET 1 AA3 2 TRP B 81 GLU B 82 0 SHEET 2 AA3 2 LYS A 89 ALA A 90 -1 O LYS A 89 N GLU B 82 SHEET 1 AA4 2 LYS B 89 ALA B 90 0 SHEET 2 AA4 2 TRP A 81 GLU A 82 -1 O GLU A 82 N LYS B 89 SHEET 1 AA5 2 SER B 162 PRO B 164 0 SHEET 2 AA5 2 ARG B 287 PRO B 289 -1 O ILE B 288 N TRP B 163 SHEET 1 AA6 4 GLU B 248 THR B 251 0 SHEET 2 AA6 4 LYS B 216 TYR B 221 1 N LEU B 219 O MET B 250 SHEET 3 AA6 4 ARG B 190 VAL B 194 1 N VAL B 191 O THR B 218 SHEET 4 AA6 4 VAL B 280 MET B 283 1 O MET B 282 N VAL B 194 SHEET 1 AA7 3 PRO B 255 LEU B 260 0 SHEET 2 AA7 3 LYS B 266 PHE B 270 -1 O HIS B 267 N SER B 259 SHEET 3 AA7 3 THR B 275 VAL B 278 -1 O VAL B 278 N LYS B 266 SHEET 1 AA8 7 ALA B 363 VAL B 366 0 SHEET 2 AA8 7 ILE B 372 GLY B 376 -1 O ILE B 372 N VAL B 366 SHEET 3 AA8 7 VAL B 424 LEU B 430 -1 O LEU B 429 N GLY B 373 SHEET 4 AA8 7 PHE B 411 ASN B 418 -1 N VAL B 416 O LEU B 425 SHEET 5 AA8 7 LYS B 388 PHE B 396 -1 N PHE B 396 O PHE B 411 SHEET 6 AA8 7 TYR B 476 VAL B 479 -1 O TYR B 478 N VAL B 389 SHEET 7 AA8 7 GLU B 482 MET B 484 -1 O MET B 484 N TYR B 477 SHEET 1 AA9 5 LEU A 120 LEU A 124 0 SHEET 2 AA9 5 VAL A 31 ASP A 35 1 N VAL A 33 O PHE A 123 SHEET 3 AA9 5 LEU A 7 ILE A 10 1 N VAL A 9 O ALA A 32 SHEET 4 AA9 5 ILE A 156 LEU A 158 1 O LEU A 157 N VAL A 8 SHEET 5 AA9 5 ILE A 322 ALA A 324 1 O TYR A 323 N LEU A 158 SHEET 1 AB1 3 TRP A 126 SER A 131 0 SHEET 2 AB1 3 VAL A 134 ARG A 138 -1 O ARG A 138 N TRP A 126 SHEET 3 AB1 3 VAL A 147 GLN A 152 -1 O LYS A 148 N VAL A 137 SHEET 1 AB2 2 SER A 162 PRO A 164 0 SHEET 2 AB2 2 ARG A 287 PRO A 289 -1 O ILE A 288 N TRP A 163 SHEET 1 AB3 4 GLU A 248 THR A 251 0 SHEET 2 AB3 4 LYS A 216 TYR A 221 1 N LEU A 219 O MET A 250 SHEET 3 AB3 4 ARG A 190 VAL A 194 1 N VAL A 191 O THR A 218 SHEET 4 AB3 4 VAL A 280 MET A 283 1 O MET A 282 N VAL A 194 SHEET 1 AB4 3 PRO A 255 LEU A 260 0 SHEET 2 AB4 3 LYS A 266 PHE A 270 -1 O HIS A 267 N SER A 259 SHEET 3 AB4 3 THR A 275 VAL A 278 -1 O VAL A 278 N LYS A 266 SHEET 1 AB5 7 ALA A 363 VAL A 366 0 SHEET 2 AB5 7 ILE A 372 GLY A 376 -1 O ILE A 372 N VAL A 366 SHEET 3 AB5 7 VAL A 424 LEU A 430 -1 O LEU A 429 N GLY A 373 SHEET 4 AB5 7 PHE A 411 ASN A 418 -1 N VAL A 416 O LEU A 425 SHEET 5 AB5 7 LYS A 388 PHE A 396 -1 N PHE A 396 O PHE A 411 SHEET 6 AB5 7 TYR A 476 VAL A 479 -1 O TYR A 478 N VAL A 389 SHEET 7 AB5 7 GLU A 482 MET A 484 -1 O MET A 484 N TYR A 477 SSBOND 1 CYS B 52 CYS B 57 1555 1555 2.04 SSBOND 2 CYS A 52 CYS A 57 1555 1555 2.04 CISPEP 1 PRO B 42 PRO B 43 0 3.69 CISPEP 2 ILE B 369 PRO B 370 0 -3.50 CISPEP 3 HIS B 461 PRO B 462 0 -8.63 CISPEP 4 PRO A 42 PRO A 43 0 2.57 CISPEP 5 ILE A 369 PRO A 370 0 4.92 CISPEP 6 HIS A 461 PRO A 462 0 -8.66 SITE 1 AC1 39 HIS A 461 ILE B 10 GLY B 11 GLY B 13 SITE 2 AC1 39 SER B 14 GLY B 15 VAL B 34 ASP B 35 SITE 3 AC1 39 VAL B 36 ALA B 46 ALA B 47 GLY B 50 SITE 4 AC1 39 THR B 51 CYS B 52 GLY B 56 CYS B 57 SITE 5 AC1 39 LYS B 60 GLY B 125 TRP B 126 GLY B 127 SITE 6 AC1 39 ALA B 159 THR B 160 GLY B 161 PHE B 198 SITE 7 AC1 39 ARG B 287 ARG B 290 GLY B 326 ASP B 327 SITE 8 AC1 39 MET B 333 LEU B 334 THR B 335 PRO B 336 SITE 9 AC1 39 HOH B 623 HOH B 624 HOH B 640 HOH B 671 SITE 10 AC1 39 HOH B 672 HOH B 673 HOH B 684 SITE 1 AC2 7 ASN B 91 THR B 140 ALA B 141 TRP B 163 SITE 2 AC2 7 ARG B 290 ASP B 293 HOH B 778 SITE 1 AC3 4 LYS B 257 SER B 259 HIS B 267 HOH B 661 SITE 1 AC4 2 ARG B 189 ARG B 190 SITE 1 AC5 7 LEU A 399 TRP B 21 SER B 109 TYR B 110 SITE 2 AC5 7 GLY B 112 MET B 113 ASP B 116 SITE 1 AC6 36 ILE A 10 GLY A 11 GLY A 13 SER A 14 SITE 2 AC6 36 GLY A 15 VAL A 34 ASP A 35 VAL A 36 SITE 3 AC6 36 ALA A 46 ALA A 47 GLY A 50 THR A 51 SITE 4 AC6 36 CYS A 52 CYS A 57 LYS A 60 GLY A 125 SITE 5 AC6 36 TRP A 126 GLY A 127 ALA A 159 THR A 160 SITE 6 AC6 36 GLY A 161 ARG A 287 ARG A 290 GLY A 326 SITE 7 AC6 36 ASP A 327 MET A 333 LEU A 334 THR A 335 SITE 8 AC6 36 PRO A 336 HOH A 623 HOH A 624 HOH A 631 SITE 9 AC6 36 HOH A 660 HOH A 665 HOH A 675 HIS B 461 SITE 1 AC7 11 PHE A 396 PRO A 398 LEU A 399 PRO A 462 SITE 2 AC7 11 THR A 463 SER A 464 GLU A 466 GLU A 467 SITE 3 AC7 11 SER A 470 HOH A 720 LYS B 61 SITE 1 AC8 6 TRP A 21 VAL A 58 SER A 109 TYR A 110 SITE 2 AC8 6 GLY A 112 MET A 113 CRYST1 117.190 117.190 224.170 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008533 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004461 0.00000