HEADER IMMUNE SYSTEM 29-MAR-19 6OFI TITLE CRYSTAL STRUCTURE OF THE RV144 C1-C2 SPECIFIC ANTIBODY CH55 FAB IN TITLE 2 COMPLEX WITH HIV-1 CLADE A/E GP120 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLADE A/E 93TH057 HIV-1 GP120 CORE; COMPND 3 CHAIN: G; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CH55 FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: CH55 FAB LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: HIV-1 ENV; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL: HEK 293 GNT1-; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL: HEK 293; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM_CELL: HEK 293 KEYWDS ANTI-HIV-1 ENV ANTIBODY CH55, CD4I ANTIBODY, ADCC, HIV-1 ENV, IMMUNE KEYWDS 2 SYSTEM, RV144 VACCINE TRIAL, CLADE A/E 93TH057, VIRAL PROTEIN-IMMUNE KEYWDS 3 SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.D.TOLBERT,F.YAN,V.VAN,M.PAZGIER REVDAT 4 11-OCT-23 6OFI 1 HETSYN REVDAT 3 29-JUL-20 6OFI 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 15-JUL-20 6OFI 1 JRNL REVDAT 1 24-JUN-20 6OFI 0 JRNL AUTH W.D.TOLBERT,V.VAN,R.SHERBURN,M.TUYISHIME,F.YAN,D.N.NGUYEN, JRNL AUTH 2 S.STANFIELD-OAKLEY,D.EASTERHOFF,M.BONSIGNORI,B.F.HAYNES, JRNL AUTH 3 M.A.MOODY,K.RAY,G.FERRARI,G.K.LEWIS,M.PAZGIER JRNL TITL RECOGNITION PATTERNS OF THE C1/C2 EPITOPES INVOLVED IN JRNL TITL 2 FC-MEDIATED RESPONSE IN HIV-1 NATURAL INFECTION AND THE JRNL TITL 3 RV114 VACCINE TRIAL. JRNL REF MBIO V. 11 2020 JRNL REFN ESSN 2150-7511 JRNL PMID 32605979 JRNL DOI 10.1128/MBIO.00208-20 REMARK 2 REMARK 2 RESOLUTION. 3.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.7 REMARK 3 NUMBER OF REFLECTIONS : 8595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.326 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.4365 - 5.4986 0.75 2658 132 0.2571 0.2952 REMARK 3 2 5.4986 - 4.3660 0.83 2704 150 0.2571 0.3399 REMARK 3 3 4.3660 - 3.8145 0.87 2819 132 0.3214 0.3750 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.740 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6004 REMARK 3 ANGLE : 1.061 8180 REMARK 3 CHIRALITY : 0.057 943 REMARK 3 PLANARITY : 0.007 1041 REMARK 3 DIHEDRAL : 6.900 3561 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'G' AND RESID 44 THROUGH 492) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3898 -22.8343 -6.4682 REMARK 3 T TENSOR REMARK 3 T11: 1.0064 T22: 0.7538 REMARK 3 T33: 0.8624 T12: -0.0513 REMARK 3 T13: 0.0073 T23: -0.0737 REMARK 3 L TENSOR REMARK 3 L11: 2.7353 L22: 0.3300 REMARK 3 L33: 3.5954 L12: -0.0823 REMARK 3 L13: 1.8491 L23: -0.3163 REMARK 3 S TENSOR REMARK 3 S11: -0.4611 S12: -0.2782 S13: 0.2638 REMARK 3 S21: 0.1797 S22: 0.0784 S23: 0.1606 REMARK 3 S31: -0.5308 S32: -0.5635 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'H' AND RESID 1 THROUGH 213) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5128 -8.7960 20.6120 REMARK 3 T TENSOR REMARK 3 T11: 0.2099 T22: 0.6213 REMARK 3 T33: 0.3195 T12: 0.0527 REMARK 3 T13: 0.0313 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.3919 L22: 3.1676 REMARK 3 L33: 0.1189 L12: 1.0867 REMARK 3 L13: 0.3697 L23: 0.4283 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: 0.3635 S13: -0.1347 REMARK 3 S21: -0.1049 S22: 0.0188 S23: -0.1690 REMARK 3 S31: 0.2582 S32: 0.5577 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'L' AND RESID 1 THROUGH 212) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0629 1.0156 34.6266 REMARK 3 T TENSOR REMARK 3 T11: 0.2508 T22: 0.3487 REMARK 3 T33: 0.2656 T12: 0.1271 REMARK 3 T13: -0.0579 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.1538 L22: 2.0453 REMARK 3 L33: 1.0166 L12: 0.6444 REMARK 3 L13: -0.9262 L23: 0.6399 REMARK 3 S TENSOR REMARK 3 S11: -0.1616 S12: -0.1716 S13: 0.1660 REMARK 3 S21: 0.3824 S22: 0.1288 S23: -0.0696 REMARK 3 S31: -0.0763 S32: 0.4739 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8672 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.24900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6OED, 3TGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 6000, 0.1 M SODIUM CITRATE PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.33133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 272.66267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 204.49700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 340.82833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.16567 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 136.33133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 272.66267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 340.82833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 204.49700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.16567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL G 42 REMARK 465 PRO G 43 REMARK 465 ALA G 60 REMARK 465 HIS G 61 REMARK 465 GLU G 62 REMARK 465 THR G 63 REMARK 465 GLU G 64 REMARK 465 VAL G 65 REMARK 465 HIS G 66 REMARK 465 ASN G 67 REMARK 465 VAL G 68 REMARK 465 VAL G 193 REMARK 465 LYS G 194 REMARK 465 LEU G 195 REMARK 465 THR G 196 REMARK 465 GLY G 197 REMARK 465 GLY G 198 REMARK 465 SER G 199 REMARK 465 VAL G 200 REMARK 465 ILE G 201 REMARK 465 LYS G 202 REMARK 465 GLN G 203 REMARK 465 ALA G 204 REMARK 465 SER G 316 REMARK 465 ASN G 317 REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 ILE G 402 REMARK 465 GLY G 403 REMARK 465 ASN G 404 REMARK 465 GLU G 405 REMARK 465 THR G 406 REMARK 465 MET G 407 REMARK 465 LYS G 408 REMARK 465 GLY G 409 REMARK 465 PRO G 438 REMARK 465 ILE G 439 REMARK 465 ASP G 440 REMARK 465 GLY G 441 REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 LYS H 214 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP G 45 145.44 73.48 REMARK 500 THR G 51 87.94 -60.67 REMARK 500 ALA G 58 161.87 -42.64 REMARK 500 THR G 71 -83.65 -59.96 REMARK 500 PRO G 79 34.40 -89.86 REMARK 500 ASN G 80 81.63 -170.46 REMARK 500 GLN G 82 79.63 -158.23 REMARK 500 GLU G 83 97.69 -63.26 REMARK 500 ASN G 88 22.44 37.55 REMARK 500 SER G 209 155.30 -38.25 REMARK 500 PHE G 210 108.09 -160.43 REMARK 500 THR G 248 -141.29 -64.52 REMARK 500 PRO G 253 82.32 -68.42 REMARK 500 GLN G 258 -60.64 63.76 REMARK 500 GLU G 268 -75.14 -112.89 REMARK 500 ASP G 325 80.83 56.46 REMARK 500 THR G 336 -72.56 -57.54 REMARK 500 PHE G 353 53.58 -104.56 REMARK 500 ASN G 354 78.69 20.54 REMARK 500 ASN G 355 18.96 56.65 REMARK 500 ASP G 368 97.64 -62.37 REMARK 500 PHE G 391 51.38 -91.76 REMARK 500 ASN G 411 54.79 -101.04 REMARK 500 ARG G 456 -151.47 -86.06 REMARK 500 ASP G 457 -95.70 -142.45 REMARK 500 ASN G 462 -7.87 76.04 REMARK 500 THR G 463 -145.40 49.85 REMARK 500 VAL H 2 95.62 -68.33 REMARK 500 ALA H 16 -147.67 -103.28 REMARK 500 PRO H 52A 24.00 -74.64 REMARK 500 SER H 54 -147.65 -82.58 REMARK 500 THR H 73 72.63 -60.75 REMARK 500 SER H 74 -53.37 -164.83 REMARK 500 ASN H 76 63.01 25.10 REMARK 500 LEU H 82C 92.28 -59.47 REMARK 500 PRO H 96 174.49 -57.02 REMARK 500 GLU H 100 -129.14 51.42 REMARK 500 ARG H 100A -103.61 -130.36 REMARK 500 HIS H 100B 91.68 41.63 REMARK 500 ASP H 101 -90.91 -75.39 REMARK 500 ASP H 144 73.82 61.25 REMARK 500 PHE H 146 132.06 -177.58 REMARK 500 ASN H 204 80.84 -44.36 REMARK 500 SER L 7 -101.75 -97.09 REMARK 500 SER L 28 98.51 -62.70 REMARK 500 SER L 30 64.10 60.65 REMARK 500 ASN L 32 -106.37 -106.61 REMARK 500 LEU L 33 160.27 67.14 REMARK 500 ALA L 51 -30.46 71.00 REMARK 500 SER L 52 -34.92 -130.65 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF1 6OFI G 44 492 UNP A0A0M3KKW9_9HIV1 DBREF2 6OFI G A0A0M3KKW9 1 353 DBREF 6OFI H 1 214 PDB 6OFI 6OFI 1 214 DBREF 6OFI L 1 214 PDB 6OFI 6OFI 1 214 SEQADV 6OFI VAL G 42 UNP A0A0M3KKW EXPRESSION TAG SEQADV 6OFI PRO G 43 UNP A0A0M3KKW EXPRESSION TAG SEQADV 6OFI SER G 375 UNP A0A0M3KKW HIS 242 ENGINEERED MUTATION SEQRES 1 G 355 VAL PRO VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS SEQRES 2 G 355 ALA SER ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN SEQRES 3 G 355 VAL TRP ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN SEQRES 4 G 355 PRO GLN GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE SEQRES 5 G 355 ASN MET TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU SEQRES 6 G 355 ASP VAL ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS SEQRES 7 G 355 VAL LYS LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS SEQRES 8 G 355 PRO LYS ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS SEQRES 9 G 355 THR PRO ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS SEQRES 10 G 355 ASN PHE ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER SEQRES 11 G 355 VAL GLN CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR SEQRES 12 G 355 GLN LEU LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE SEQRES 13 G 355 ILE ILE ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR SEQRES 14 G 355 ILE ILE VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS SEQRES 15 G 355 THR ARG PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP SEQRES 16 G 355 ILE ARG LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP SEQRES 17 G 355 ASN LYS VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU SEQRES 18 G 355 HIS PHE ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER SEQRES 19 G 355 GLY GLY ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS SEQRES 20 G 355 ARG GLY GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE SEQRES 21 G 355 ASN ASN THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS SEQRES 22 G 355 ASN GLY THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE SEQRES 23 G 355 ILE ASN MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA SEQRES 24 G 355 PRO PRO ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE SEQRES 25 G 355 THR GLY ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN SEQRES 26 G 355 THR SER ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE SEQRES 27 G 355 LYS ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL SEQRES 28 G 355 VAL GLN ILE GLU SEQRES 1 H 223 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 223 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 223 TYR ILE PHE ILE SER TYR PHE MET HIS TRP VAL ARG GLN SEQRES 4 H 223 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY ILE ILE ASN SEQRES 5 H 223 PRO SER SER GLY ASP THR ARG TYR ALA GLN LYS PHE GLN SEQRES 6 H 223 GLY ARG VAL THR MET THR ARG ASP THR SER THR ASN THR SEQRES 7 H 223 VAL TYR MET GLU LEU SER SER LEU ARG SER ASP ASP THR SEQRES 8 H 223 ALA VAL TYR TYR CYS ALA ARG ARG PRO GLY GLY LEU GLU SEQRES 9 H 223 ARG HIS ASN TRP LEU ASP PRO TRP GLY GLN GLY THR LEU SEQRES 10 H 223 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 223 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 223 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 223 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 223 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 223 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 223 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 223 HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU SEQRES 18 H 223 PRO LYS SEQRES 1 L 215 GLU ILE VAL MET THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 L 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER ILE SER SER ASN LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 215 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SER SEQRES 5 L 215 THR ARG ALA THR GLY THR PRO ALA ARG PHE SER GLY SER SEQRES 6 L 215 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 215 GLN SER GLU ASP PHE ALA SER TYR TYR CYS GLN GLN TYR SEQRES 8 L 215 ASN ASN TRP PRO ALA ILE THR PHE GLY GLN GLY THR ARG SEQRES 9 L 215 LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS HET NAG G 501 14 HET NAG G 502 14 HET NAG G 503 14 HET NAG G 504 14 HET NAG G 505 14 HET NAG G 506 14 HET NAG G 507 14 HET NAG G 508 14 HET NAG G 509 14 HET NAG G 510 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 10(C8 H15 N O6) HELIX 1 AA1 ASN G 99 LEU G 116 1 18 HELIX 2 AA2 ASN G 334 PHE G 353 1 20 HELIX 3 AA3 ASP G 368 MET G 373 5 6 HELIX 4 AA4 ILE G 475 TYR G 484 1 10 HELIX 5 AA5 ARG H 83 THR H 87 5 5 HELIX 6 AA6 PRO H 185 LEU H 189 5 5 HELIX 7 AA7 GLN L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 121 LYS L 126 1 6 HELIX 9 AA9 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 5 LYS G 46 ASP G 47 0 SHEET 2 AA1 5 TYR G 486 GLN G 490 -1 O GLN G 490 N LYS G 46 SHEET 3 AA1 5 TYR G 223 CYS G 228 -1 N VAL G 224 O VAL G 489 SHEET 4 AA1 5 VAL G 242 VAL G 245 -1 O VAL G 245 N ILE G 225 SHEET 5 AA1 5 ILE G 84 HIS G 85 -1 N ILE G 84 O SER G 244 SHEET 1 AA2 3 VAL G 75 PRO G 76 0 SHEET 2 AA2 3 PHE G 53 SER G 56 1 N CYS G 54 O VAL G 75 SHEET 3 AA2 3 ILE G 215 CYS G 218 -1 O HIS G 216 N ALA G 55 SHEET 1 AA3 2 GLU G 91 ASN G 94 0 SHEET 2 AA3 2 THR G 236 CYS G 239 -1 O CYS G 239 N GLU G 91 SHEET 1 AA4 5 LEU G 259 LEU G 261 0 SHEET 2 AA4 5 ILE G 443 THR G 455 -1 O GLY G 451 N LEU G 260 SHEET 3 AA4 5 ILE G 284 ARG G 298 -1 N VAL G 286 O ILE G 452 SHEET 4 AA4 5 ASN G 465 PRO G 470 0 SHEET 5 AA4 5 THR G 358 PHE G 361 1 N ILE G 360 O PHE G 468 SHEET 1 AA5 7 ILE G 271 ARG G 273 0 SHEET 2 AA5 7 ILE G 284 ARG G 298 -1 O HIS G 287 N ILE G 271 SHEET 3 AA5 7 ILE G 443 THR G 455 -1 O ILE G 452 N VAL G 286 SHEET 4 AA5 7 ALA G 329 ILE G 333 0 SHEET 5 AA5 7 ILE G 414 ILE G 420 -1 O ILE G 414 N ILE G 333 SHEET 6 AA5 7 GLU G 381 CYS G 385 -1 N TYR G 384 O LYS G 419 SHEET 7 AA5 7 HIS G 374 CYS G 378 -1 N PHE G 376 O PHE G 383 SHEET 1 AA6 2 ILE G 423 ASN G 425 0 SHEET 2 AA6 2 GLN G 432 MET G 434 -1 O ALA G 433 N ILE G 424 SHEET 1 AA7 4 GLN H 3 GLN H 6 0 SHEET 2 AA7 4 SER H 17 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA7 4 THR H 77 SER H 82A-1 O MET H 80 N VAL H 20 SHEET 4 AA7 4 VAL H 67 ARG H 71 -1 N THR H 70 O TYR H 79 SHEET 1 AA8 5 THR H 57 TYR H 59 0 SHEET 2 AA8 5 LEU H 45 ILE H 51 -1 N ILE H 50 O ARG H 58 SHEET 3 AA8 5 MET H 34 GLN H 39 -1 N TRP H 36 O MET H 48 SHEET 4 AA8 5 ALA H 88 ALA H 93 -1 O VAL H 89 N GLN H 39 SHEET 5 AA8 5 THR H 107 VAL H 109 -1 O THR H 107 N TYR H 90 SHEET 1 AA9 4 SER H 120 PRO H 123 0 SHEET 2 AA9 4 ALA H 136 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA9 4 LEU H 175 VAL H 184 -1 O TYR H 176 N TYR H 145 SHEET 4 AA9 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB1 4 SER H 120 PRO H 123 0 SHEET 2 AB1 4 ALA H 136 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AB1 4 LEU H 175 VAL H 184 -1 O TYR H 176 N TYR H 145 SHEET 4 AB1 4 VAL H 169 GLN H 171 -1 N GLN H 171 O LEU H 175 SHEET 1 AB2 3 VAL H 150 TRP H 154 0 SHEET 2 AB2 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB2 3 THR H 205 VAL H 211 -1 O LYS H 209 N CYS H 196 SHEET 1 AB3 4 MET L 4 THR L 5 0 SHEET 2 AB3 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB3 4 GLU L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 AB3 4 PHE L 62 SER L 63 -1 N SER L 63 O THR L 74 SHEET 1 AB4 2 SER L 12 VAL L 13 0 SHEET 2 AB4 2 GLU L 105 ILE L 106 1 O GLU L 105 N VAL L 13 SHEET 1 AB5 5 THR L 53 ARG L 54 0 SHEET 2 AB5 5 ARG L 45 TYR L 49 -1 N TYR L 49 O THR L 53 SHEET 3 AB5 5 ALA L 34 GLN L 38 -1 N GLN L 37 O ARG L 45 SHEET 4 AB5 5 SER L 85 GLN L 89 -1 O SER L 85 N GLN L 38 SHEET 5 AB5 5 THR L 102 ARG L 103 -1 O THR L 102 N TYR L 86 SHEET 1 AB6 4 SER L 114 PHE L 118 0 SHEET 2 AB6 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB6 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB6 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB7 4 ALA L 153 LEU L 154 0 SHEET 2 AB7 4 ALA L 144 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB7 4 VAL L 191 HIS L 198 -1 O ALA L 193 N LYS L 149 SHEET 4 AB7 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.04 SSBOND 2 CYS G 119 CYS G 205 1555 1555 2.03 SSBOND 3 CYS G 218 CYS G 247 1555 1555 2.03 SSBOND 4 CYS G 228 CYS G 239 1555 1555 2.03 SSBOND 5 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 6 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 7 CYS G 385 CYS G 418 1555 1555 2.03 SSBOND 8 CYS G 395 CYS G 410 1555 1555 2.03 SSBOND 9 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 10 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 11 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 12 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN G 88 C1 NAG G 501 1555 1555 1.44 LINK ND2 ASN G 234 C1 NAG G 502 1555 1555 1.43 LINK ND2 ASN G 241 C1 NAG G 503 1555 1555 1.45 LINK ND2 ASN G 262 C1 NAG G 504 1555 1555 1.45 LINK ND2 ASN G 289 C1 NAG G 505 1555 1555 1.44 LINK ND2 ASN G 295 C1 NAG G 506 1555 1555 1.47 LINK ND2 ASN G 334 C1 NAG G 507 1555 1555 1.45 LINK ND2 ASN G 386 C1 NAG G 508 1555 1555 1.45 LINK ND2 ASN G 392 C1 NAG G 509 1555 1555 1.44 LINK ND2 ASN G 448 C1 NAG G 510 1555 1555 1.45 CISPEP 1 PHE H 146 PRO H 147 0 2.70 CISPEP 2 GLU H 148 PRO H 149 0 12.38 CISPEP 3 TYR L 140 PRO L 141 0 24.33 CRYST1 90.644 90.644 408.994 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011032 0.006369 0.000000 0.00000 SCALE2 0.000000 0.012739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002445 0.00000