HEADER HYDROLASE 05-APR-19 6OHA TITLE YEAST GUANINE DEAMINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GUANINE DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE AMINASE,GUANINE AMINOHYDROLASE,GAH; COMPND 5 EC: 3.5.4.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: GUD1, YDL238C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMIDOHYDROLASE GUANINE DEAMINASE PURINE METABOLISM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.S.SHEK,J.B.FRENCH REVDAT 4 11-OCT-23 6OHA 1 REMARK REVDAT 3 01-JAN-20 6OHA 1 REMARK REVDAT 2 14-AUG-19 6OHA 1 JRNL REVDAT 1 24-JUL-19 6OHA 0 JRNL AUTH R.SHEK,T.HILAIRE,J.SIM,J.B.FRENCH JRNL TITL STRUCTURAL DETERMINANTS FOR SUBSTRATE SELECTIVITY IN GUANINE JRNL TITL 2 DEAMINASE ENZYMES OF THE AMIDOHYDROLASE SUPERFAMILY. JRNL REF BIOCHEMISTRY V. 58 3280 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31283204 JRNL DOI 10.1021/ACS.BIOCHEM.9B00341 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 33417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0700 - 5.0500 1.00 2884 135 0.1780 0.2063 REMARK 3 2 5.0500 - 4.0100 0.99 2682 163 0.1254 0.1775 REMARK 3 3 4.0100 - 3.5100 1.00 2674 162 0.1370 0.1799 REMARK 3 4 3.5100 - 3.1900 1.00 2668 132 0.1582 0.1891 REMARK 3 5 3.1900 - 2.9600 1.00 2635 171 0.1585 0.2169 REMARK 3 6 2.9600 - 2.7800 1.00 2622 154 0.1570 0.2097 REMARK 3 7 2.7800 - 2.6400 1.00 2655 138 0.1504 0.2071 REMARK 3 8 2.6400 - 2.5300 1.00 2633 128 0.1529 0.2317 REMARK 3 9 2.5300 - 2.4300 1.00 2628 134 0.1575 0.1868 REMARK 3 10 2.4300 - 2.3500 0.99 2601 158 0.1774 0.2798 REMARK 3 11 2.3500 - 2.2700 1.00 2620 135 0.1886 0.2354 REMARK 3 12 2.2700 - 2.2100 0.91 2367 138 0.2233 0.2743 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.217 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3679 REMARK 3 ANGLE : 1.139 4997 REMARK 3 CHIRALITY : 0.057 574 REMARK 3 PLANARITY : 0.008 633 REMARK 3 DIHEDRAL : 6.692 2979 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OHA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33428 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 29.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.97300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2OOD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3350 0.2 M AMMONIUM SULFATE REMARK 280 100 MM HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.08900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.63350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.54450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.08900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.54450 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.63350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -170.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 28.54450 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 508 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 10 REMARK 465 PHE A 11 REMARK 465 ASN A 12 REMARK 465 ILE A 81 REMARK 465 GLY A 82 REMARK 465 LYS A 83 REMARK 465 ASP A 84 REMARK 465 LYS A 85 REMARK 465 THR A 86 REMARK 465 ARG A 87 REMARK 465 LYS A 435 REMARK 465 GLU A 436 REMARK 465 LYS A 437 REMARK 465 ASP A 438 REMARK 465 GLN A 439 REMARK 465 MET A 440 REMARK 465 GLN A 441 REMARK 465 GLU A 442 REMARK 465 GLN A 443 REMARK 465 GLU A 444 REMARK 465 GLN A 445 REMARK 465 GLU A 446 REMARK 465 GLN A 447 REMARK 465 GLY A 448 REMARK 465 GLN A 449 REMARK 465 ASP A 450 REMARK 465 PRO A 451 REMARK 465 TYR A 452 REMARK 465 LYS A 453 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 39 CE NZ REMARK 470 SER A 56 OG REMARK 470 ILE A 80 CG1 CG2 CD1 REMARK 470 ASN A 88 CG OD1 ND2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 LYS A 249 CE NZ REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 ASP A 377 CG OD1 OD2 REMARK 470 GLU A 402 CG CD OE1 OE2 REMARK 470 ASN A 454 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 400 CG - SD - CE ANGL. DEV. = 15.8 DEGREES REMARK 500 ASP A 428 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 100 107.54 -163.93 REMARK 500 PHE A 112 -12.82 -167.42 REMARK 500 ASN A 161 -111.79 -100.92 REMARK 500 SER A 278 166.12 179.24 REMARK 500 HIS A 297 -73.69 84.32 REMARK 500 GLU A 375 -120.03 -80.64 REMARK 500 THR A 391 -85.67 -124.21 REMARK 500 ASP A 472 -158.42 -150.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 504 REMARK 610 1PE A 505 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 HIS A 102 NE2 96.3 REMARK 620 3 HIS A 258 NE2 93.8 93.0 REMARK 620 4 ASP A 348 OD1 86.2 94.2 172.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XAN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6OH9 RELATED DB: PDB REMARK 900 YEAST GUANINE DEAMINASE DBREF 6OHA A 1 489 UNP Q07729 GUAD_YEAST 1 489 SEQRES 1 A 489 MET THR LYS SER ASP LEU LEU PHE ASP LYS PHE ASN ASP SEQRES 2 A 489 LYS HIS GLY LYS PHE LEU VAL PHE PHE GLY THR PHE VAL SEQRES 3 A 489 ASP THR PRO LYS LEU GLY GLU LEU ARG ILE ARG GLU LYS SEQRES 4 A 489 THR SER VAL GLY VAL LEU ASN GLY ILE ILE ARG PHE VAL SEQRES 5 A 489 ASN ARG ASN SER LEU ASP PRO VAL LYS ASP CYS LEU ASP SEQRES 6 A 489 HIS ASP SER SER LEU SER PRO GLU ASP VAL THR VAL VAL SEQRES 7 A 489 ASP ILE ILE GLY LYS ASP LYS THR ARG ASN ASN SER PHE SEQRES 8 A 489 TYR PHE PRO GLY PHE VAL ASP THR HIS ASN HIS VAL SER SEQRES 9 A 489 GLN TYR PRO ASN VAL GLY VAL PHE GLY ASN SER THR LEU SEQRES 10 A 489 LEU ASP TRP LEU GLU LYS TYR THR PHE PRO ILE GLU ALA SEQRES 11 A 489 ALA LEU ALA ASN GLU ASN ILE ALA ARG GLU VAL TYR ASN SEQRES 12 A 489 LYS VAL ILE SER LYS THR LEU SER HIS GLY THR THR THR SEQRES 13 A 489 VAL ALA TYR TYR ASN THR ILE ASP LEU LYS SER THR LYS SEQRES 14 A 489 LEU LEU ALA GLN LEU SER SER LEU LEU GLY GLN ARG VAL SEQRES 15 A 489 LEU VAL GLY LYS VAL CYS MET ASP THR ASN GLY PRO GLU SEQRES 16 A 489 TYR TYR ILE GLU ASP THR LYS THR SER PHE GLU SER THR SEQRES 17 A 489 VAL LYS VAL VAL LYS TYR ILE ARG GLU THR ILE CYS ASP SEQRES 18 A 489 PRO LEU VAL ASN PRO ILE VAL THR PRO ARG PHE ALA PRO SEQRES 19 A 489 SER CYS SER ARG GLU LEU MET GLN GLN LEU SER LYS LEU SEQRES 20 A 489 VAL LYS ASP GLU ASN ILE HIS VAL GLN THR HIS LEU SER SEQRES 21 A 489 GLU ASN LYS GLU GLU ILE GLN TRP VAL GLN ASP LEU PHE SEQRES 22 A 489 PRO GLU CYS GLU SER TYR THR ASP VAL TYR ASP LYS TYR SEQRES 23 A 489 GLY LEU LEU THR GLU LYS THR VAL LEU ALA HIS CYS ILE SEQRES 24 A 489 HIS LEU THR ASP ALA GLU ALA ARG VAL ILE LYS GLN ARG SEQRES 25 A 489 ARG CYS GLY ILE SER HIS CYS PRO ILE SER ASN SER SER SEQRES 26 A 489 LEU THR SER GLY GLU CYS ARG VAL ARG TRP LEU LEU ASP SEQRES 27 A 489 GLN GLY ILE LYS VAL GLY LEU GLY THR ASP VAL SER ALA SEQRES 28 A 489 GLY HIS SER CYS SER ILE LEU THR THR GLY ARG GLN ALA SEQRES 29 A 489 PHE ALA VAL SER ARG HIS LEU ALA MET ARG GLU THR ASP SEQRES 30 A 489 HIS ALA LYS LEU SER VAL SER GLU CYS LEU PHE LEU ALA SEQRES 31 A 489 THR MET GLY GLY ALA GLN VAL LEU ARG MET ASP GLU THR SEQRES 32 A 489 LEU GLY THR PHE ASP VAL GLY LYS GLN PHE ASP ALA GLN SEQRES 33 A 489 MET ILE ASP THR ASN ALA PRO GLY SER ASN VAL ASP MET SEQRES 34 A 489 PHE HIS TRP GLN LEU LYS GLU LYS ASP GLN MET GLN GLU SEQRES 35 A 489 GLN GLU GLN GLU GLN GLY GLN ASP PRO TYR LYS ASN PRO SEQRES 36 A 489 PRO LEU LEU THR ASN GLU ASP ILE ILE ALA LYS TRP PHE SEQRES 37 A 489 PHE ASN GLY ASP ASP ARG ASN THR THR LYS VAL TRP VAL SEQRES 38 A 489 ALA GLY GLN GLN VAL TYR GLN ILE HET XAN A 501 12 HET ZN A 502 1 HET 1PE A 503 28 HET 1PE A 504 14 HET 1PE A 505 13 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HETNAM XAN XANTHINE HETNAM ZN ZINC ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN 1PE PEG400 FORMUL 2 XAN C5 H4 N4 O2 FORMUL 3 ZN ZN 2+ FORMUL 4 1PE 3(C10 H22 O6) FORMUL 7 SO4 3(O4 S 2-) FORMUL 10 HOH *275(H2 O) HELIX 1 AA1 ASP A 58 ASP A 67 1 10 HELIX 2 AA2 SER A 71 GLU A 73 5 3 HELIX 3 AA3 SER A 104 VAL A 109 5 6 HELIX 4 AA4 THR A 116 TYR A 124 1 9 HELIX 5 AA5 TYR A 124 LEU A 132 1 9 HELIX 6 AA6 ASN A 134 HIS A 152 1 19 HELIX 7 AA7 ASP A 164 GLY A 179 1 16 HELIX 8 AA8 ASP A 200 THR A 218 1 19 HELIX 9 AA9 PHE A 232 CYS A 236 5 5 HELIX 10 AB1 SER A 237 ASN A 252 1 16 HELIX 11 AB2 ASN A 262 PHE A 273 1 12 HELIX 12 AB3 SER A 278 TYR A 286 1 9 HELIX 13 AB4 THR A 302 ARG A 313 1 12 HELIX 14 AB5 CYS A 319 LEU A 326 1 8 HELIX 15 AB6 ARG A 332 GLN A 339 1 8 HELIX 16 AB7 SER A 356 MET A 373 1 18 HELIX 17 AB8 THR A 376 LYS A 380 5 5 HELIX 18 AB9 SER A 382 THR A 391 1 10 HELIX 19 AC1 THR A 391 LEU A 398 1 8 HELIX 20 AC2 PHE A 430 LEU A 434 5 5 HELIX 21 AC3 THR A 459 GLY A 471 1 13 HELIX 22 AC4 ASP A 472 ARG A 474 5 3 SHEET 1 AA1 4 ILE A 48 ARG A 54 0 SHEET 2 AA1 4 ARG A 35 LEU A 45 -1 N GLY A 43 O ARG A 50 SHEET 3 AA1 4 PHE A 18 ASP A 27 -1 N LEU A 19 O VAL A 44 SHEET 4 AA1 4 VAL A 75 ASP A 79 1 O VAL A 78 N PHE A 22 SHEET 1 AA2 4 SER A 90 PRO A 94 0 SHEET 2 AA2 4 ALA A 415 ASP A 419 -1 O ILE A 418 N PHE A 91 SHEET 3 AA2 4 THR A 476 VAL A 481 -1 O TRP A 480 N ALA A 415 SHEET 4 AA2 4 GLN A 484 GLN A 488 -1 O GLN A 484 N VAL A 481 SHEET 1 AA310 VAL A 187 CYS A 188 0 SHEET 2 AA310 VAL A 224 PRO A 230 1 O THR A 229 N CYS A 188 SHEET 3 AA310 HIS A 254 LEU A 259 1 O HIS A 254 N VAL A 228 SHEET 4 AA310 THR A 293 HIS A 297 1 O VAL A 294 N VAL A 255 SHEET 5 AA310 GLY A 315 HIS A 318 1 O GLY A 315 N LEU A 295 SHEET 6 AA310 VAL A 343 LEU A 345 1 O GLY A 344 N HIS A 318 SHEET 7 AA310 PHE A 96 HIS A 102 1 N THR A 99 O LEU A 345 SHEET 8 AA310 THR A 154 TYR A 160 1 O THR A 156 N ASP A 98 SHEET 9 AA310 ARG A 181 GLY A 185 1 O LEU A 183 N TYR A 159 SHEET 10 AA310 VAL A 224 PRO A 230 1 O ASN A 225 N VAL A 184 LINK NE2 HIS A 100 ZN ZN A 502 1555 1555 2.05 LINK NE2 HIS A 102 ZN ZN A 502 1555 1555 2.12 LINK NE2 HIS A 258 ZN ZN A 502 1555 1555 2.20 LINK OD1 ASP A 348 ZN ZN A 502 1555 1555 2.38 CISPEP 1 VAL A 349 SER A 350 0 2.65 SITE 1 AC1 13 HIS A 102 GLN A 105 TRP A 120 LEU A 121 SITE 2 AC1 13 ARG A 231 PHE A 232 HIS A 258 GLU A 261 SITE 3 AC1 13 HIS A 297 ASP A 348 ZN A 502 HOH A 628 SITE 4 AC1 13 HOH A 693 SITE 1 AC2 5 HIS A 100 HIS A 102 HIS A 258 ASP A 348 SITE 2 AC2 5 XAN A 501 SITE 1 AC3 4 GLU A 402 VAL A 409 GLY A 410 HOH A 790 SITE 1 AC4 4 GLN A 485 VAL A 486 TYR A 487 GLN A 488 SITE 1 AC5 5 LEU A 118 TRP A 268 ARG A 374 GLU A 375 SITE 2 AC5 5 HOH A 714 SITE 1 AC6 5 GLY A 113 ASN A 114 HOH A 646 HOH A 749 SITE 2 AC6 5 HOH A 781 SITE 1 AC7 1 GLY A 424 SITE 1 AC8 3 THR A 359 ARG A 362 HOH A 724 CRYST1 106.812 106.812 114.178 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009362 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008758 0.00000