HEADER TRANSFERASE/TRANSFERASE INHIBITOR 12-APR-19 6OJV TITLE CRYSTAL STRUCTURE OF HUMAN THYMIDYLATE SYNTHASE DELTA(7-29) IN COMPLEX TITLE 2 WITH DUMP AND 2-AMINO-4-OXO-4,7-DIHYDRO-PYRROLO[2,3-D]PYRIMIDINE- TITLE 3 METHYL-PHENYL-L-GLUTAMIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE SYNTHASE,THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: B, A, C, D; COMPND 4 FRAGMENT: RESIDUES 30-313; COMPND 5 SYNONYM: TSASE,TSASE; COMPND 6 EC: 2.1.1.45,2.1.1.45; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TYMS, TS, OK/SW-CL.29; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: TX-61; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-17 KEYWDS INHIBITOR, TS, TS-DHFR, TRANSFERASE, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.J.CZYZYK,K.S.ANDERSON,M.VALHONDO,W.L.JORGENSEN REVDAT 4 11-OCT-23 6OJV 1 REMARK REVDAT 3 18-DEC-19 6OJV 1 REMARK REVDAT 2 21-AUG-19 6OJV 1 JRNL REVDAT 1 19-JUN-19 6OJV 0 JRNL AUTH D.J.CZYZYK,M.VALHONDO,W.L.JORGENSEN,K.S.ANDERSON JRNL TITL UNDERSTANDING THE STRUCTURAL BASIS OF SPECIES SELECTIVE, JRNL TITL 2 STEREOSPECIFIC INHIBITION FOR CRYPTOSPORIDIUM AND HUMAN JRNL TITL 3 THYMIDYLATE SYNTHASE. JRNL REF FEBS LETT. V. 593 2069 2019 JRNL REFN ISSN 0014-5793 JRNL PMID 31172516 JRNL DOI 10.1002/1873-3468.13474 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 41049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5640 - 6.3912 0.99 2673 141 0.1678 0.1675 REMARK 3 2 6.3912 - 5.0746 1.00 2647 140 0.2128 0.2575 REMARK 3 3 5.0746 - 4.4336 1.00 2631 138 0.1712 0.1797 REMARK 3 4 4.4336 - 4.0285 0.99 2609 137 0.1849 0.1845 REMARK 3 5 4.0285 - 3.7398 0.99 2618 138 0.2407 0.2879 REMARK 3 6 3.7398 - 3.5194 0.99 2598 137 0.2645 0.2991 REMARK 3 7 3.5194 - 3.3432 0.99 2599 136 0.2876 0.3255 REMARK 3 8 3.3432 - 3.1977 1.00 2603 137 0.3092 0.3625 REMARK 3 9 3.1977 - 3.0746 1.00 2641 140 0.3250 0.3792 REMARK 3 10 3.0746 - 2.9685 1.00 2617 137 0.3332 0.3954 REMARK 3 11 2.9685 - 2.8757 1.00 2589 136 0.3390 0.3796 REMARK 3 12 2.8757 - 2.7935 0.99 2572 135 0.3371 0.3860 REMARK 3 13 2.7935 - 2.7200 0.98 2583 135 0.3692 0.3938 REMARK 3 14 2.7200 - 2.6536 0.99 2595 137 0.4209 0.4987 REMARK 3 15 2.6536 - 2.5933 0.93 2423 127 0.4602 0.5303 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 9397 REMARK 3 ANGLE : 0.511 12780 REMARK 3 CHIRALITY : 0.040 1366 REMARK 3 PLANARITY : 0.004 1653 REMARK 3 DIHEDRAL : 9.044 5446 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14100 REMARK 200 FOR THE DATA SET : 12.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.16000 REMARK 200 FOR SHELL : 1.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HZW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL SOLUTION 5% PEG 8000, 40% MPD, REMARK 280 AND 0.1M NA CACODYLATE DROP RATIO 1:1 ENZYME MIX/WELL SOLUTION, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.47500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.51650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.47500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.51650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 VAL B 3 REMARK 465 ALA B 4 REMARK 465 GLY B 5 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 VAL C 3 REMARK 465 ALA C 4 REMARK 465 GLY C 5 REMARK 465 MET D 1 REMARK 465 PRO D 2 REMARK 465 VAL D 3 REMARK 465 ALA D 4 REMARK 465 GLY D 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 244 CG CD CE NZ REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 GLU B 272 CG CD OE1 OE2 REMARK 470 LYS B 284 CG CD CE NZ REMARK 470 LYS B 287 CG CD CE NZ REMARK 470 LYS B 308 CG CD CE NZ REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 ARG C 42 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 46 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 78 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 107 CG CD CE NZ REMARK 470 ASP C 116 CG OD1 OD2 REMARK 470 GLU C 127 CG CD OE1 OE2 REMARK 470 LYS C 244 CG CD CE NZ REMARK 470 GLU C 263 CG CD OE1 OE2 REMARK 470 GLU C 272 CG CD OE1 OE2 REMARK 470 LYS C 278 CG CD CE NZ REMARK 470 ARG C 280 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 284 CG CD CE NZ REMARK 470 LYS C 287 CG CD CE NZ REMARK 470 ASP C 290 CG OD1 OD2 REMARK 470 LYS C 292 CG CD CE NZ REMARK 470 GLU C 299 CG CD OE1 OE2 REMARK 470 ASN C 302 CG OD1 ND2 REMARK 470 LYS C 308 CG CD CE NZ REMARK 470 GLN D 38 CG CD OE1 NE2 REMARK 470 ARG D 42 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 46 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 107 CG CD CE NZ REMARK 470 GLU D 145 CG CD OE1 OE2 REMARK 470 ARG D 147 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 185 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 232 CG CD1 CD2 REMARK 470 LYS D 244 CG CD CE NZ REMARK 470 LYS D 266 CG CD CE NZ REMARK 470 GLN D 270 CG CD OE1 NE2 REMARK 470 GLU D 272 CG CD OE1 OE2 REMARK 470 ARG D 280 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 284 CG CD CE NZ REMARK 470 LYS D 287 CG CD CE NZ REMARK 470 LYS D 292 CG CD CE NZ REMARK 470 LYS D 308 CG CD CE NZ REMARK 470 VAL D 313 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 51 -169.29 -79.57 REMARK 500 PHE B 80 85.60 -65.34 REMARK 500 PRO B 133 89.76 -68.96 REMARK 500 VAL B 134 -153.97 -116.37 REMARK 500 HIS B 141 49.62 -142.53 REMARK 500 ARG B 147 -74.65 -104.34 REMARK 500 ASN B 171 82.07 -154.11 REMARK 500 PHE A 80 86.16 -64.96 REMARK 500 PRO A 133 88.43 -69.97 REMARK 500 VAL A 134 -152.77 -115.49 REMARK 500 HIS A 141 49.77 -143.20 REMARK 500 ARG A 147 -74.59 -103.71 REMARK 500 ASN A 171 83.01 -153.98 REMARK 500 THR C 51 -169.02 -79.96 REMARK 500 PHE C 80 87.12 -65.31 REMARK 500 PRO C 133 89.10 -69.01 REMARK 500 VAL C 134 -153.67 -115.25 REMARK 500 HIS C 141 49.47 -142.11 REMARK 500 ARG C 147 -75.11 -106.19 REMARK 500 ASN C 171 83.51 -154.23 REMARK 500 PHE D 80 85.16 -66.26 REMARK 500 PRO D 133 89.25 -69.56 REMARK 500 VAL D 134 -153.63 -115.46 REMARK 500 HIS D 141 48.88 -142.61 REMARK 500 ARG D 147 -76.33 -104.01 REMARK 500 ASN D 171 85.26 -154.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2XB B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2XB A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP C 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2XB C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP D 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2XB D 601 DBREF 6OJV B 1 6 UNP P04818 TYSY_HUMAN 1 6 DBREF 6OJV B 30 313 UNP P04818 TYSY_HUMAN 30 313 DBREF 6OJV A 1 6 UNP P04818 TYSY_HUMAN 1 6 DBREF 6OJV A 30 313 UNP P04818 TYSY_HUMAN 30 313 DBREF 6OJV C 1 6 UNP P04818 TYSY_HUMAN 1 6 DBREF 6OJV C 30 313 UNP P04818 TYSY_HUMAN 30 313 DBREF 6OJV D 1 6 UNP P04818 TYSY_HUMAN 1 6 DBREF 6OJV D 30 313 UNP P04818 TYSY_HUMAN 30 313 SEQRES 1 B 290 MET PRO VAL ALA GLY SER GLU LEU GLN TYR LEU GLY GLN SEQRES 2 B 290 ILE GLN HIS ILE LEU ARG CYS GLY VAL ARG LYS ASP ASP SEQRES 3 B 290 ARG THR GLY THR GLY THR LEU SER VAL PHE GLY MET GLN SEQRES 4 B 290 ALA ARG TYR SER LEU ARG ASP GLU PHE PRO LEU LEU THR SEQRES 5 B 290 THR LYS ARG VAL PHE TRP LYS GLY VAL LEU GLU GLU LEU SEQRES 6 B 290 LEU TRP PHE ILE LYS GLY SER THR ASN ALA LYS GLU LEU SEQRES 7 B 290 SER SER LYS GLY VAL LYS ILE TRP ASP ALA ASN GLY SER SEQRES 8 B 290 ARG ASP PHE LEU ASP SER LEU GLY PHE SER THR ARG GLU SEQRES 9 B 290 GLU GLY ASP LEU GLY PRO VAL TYR GLY PHE GLN TRP ARG SEQRES 10 B 290 HIS PHE GLY ALA GLU TYR ARG ASP MET GLU SER ASP TYR SEQRES 11 B 290 SER GLY GLN GLY VAL ASP GLN LEU GLN ARG VAL ILE ASP SEQRES 12 B 290 THR ILE LYS THR ASN PRO ASP ASP ARG ARG ILE ILE MET SEQRES 13 B 290 CYS ALA TRP ASN PRO ARG ASP LEU PRO LEU MET ALA LEU SEQRES 14 B 290 PRO PRO CYS HIS ALA LEU CYS GLN PHE TYR VAL VAL ASN SEQRES 15 B 290 SER GLU LEU SER CYS GLN LEU TYR GLN ARG SER GLY ASP SEQRES 16 B 290 MET GLY LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA SEQRES 17 B 290 LEU LEU THR TYR MET ILE ALA HIS ILE THR GLY LEU LYS SEQRES 18 B 290 PRO GLY ASP PHE ILE HIS THR LEU GLY ASP ALA HIS ILE SEQRES 19 B 290 TYR LEU ASN HIS ILE GLU PRO LEU LYS ILE GLN LEU GLN SEQRES 20 B 290 ARG GLU PRO ARG PRO PHE PRO LYS LEU ARG ILE LEU ARG SEQRES 21 B 290 LYS VAL GLU LYS ILE ASP ASP PHE LYS ALA GLU ASP PHE SEQRES 22 B 290 GLN ILE GLU GLY TYR ASN PRO HIS PRO THR ILE LYS MET SEQRES 23 B 290 GLU MET ALA VAL SEQRES 1 A 290 MET PRO VAL ALA GLY SER GLU LEU GLN TYR LEU GLY GLN SEQRES 2 A 290 ILE GLN HIS ILE LEU ARG CYS GLY VAL ARG LYS ASP ASP SEQRES 3 A 290 ARG THR GLY THR GLY THR LEU SER VAL PHE GLY MET GLN SEQRES 4 A 290 ALA ARG TYR SER LEU ARG ASP GLU PHE PRO LEU LEU THR SEQRES 5 A 290 THR LYS ARG VAL PHE TRP LYS GLY VAL LEU GLU GLU LEU SEQRES 6 A 290 LEU TRP PHE ILE LYS GLY SER THR ASN ALA LYS GLU LEU SEQRES 7 A 290 SER SER LYS GLY VAL LYS ILE TRP ASP ALA ASN GLY SER SEQRES 8 A 290 ARG ASP PHE LEU ASP SER LEU GLY PHE SER THR ARG GLU SEQRES 9 A 290 GLU GLY ASP LEU GLY PRO VAL TYR GLY PHE GLN TRP ARG SEQRES 10 A 290 HIS PHE GLY ALA GLU TYR ARG ASP MET GLU SER ASP TYR SEQRES 11 A 290 SER GLY GLN GLY VAL ASP GLN LEU GLN ARG VAL ILE ASP SEQRES 12 A 290 THR ILE LYS THR ASN PRO ASP ASP ARG ARG ILE ILE MET SEQRES 13 A 290 CYS ALA TRP ASN PRO ARG ASP LEU PRO LEU MET ALA LEU SEQRES 14 A 290 PRO PRO CYS HIS ALA LEU CYS GLN PHE TYR VAL VAL ASN SEQRES 15 A 290 SER GLU LEU SER CYS GLN LEU TYR GLN ARG SER GLY ASP SEQRES 16 A 290 MET GLY LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA SEQRES 17 A 290 LEU LEU THR TYR MET ILE ALA HIS ILE THR GLY LEU LYS SEQRES 18 A 290 PRO GLY ASP PHE ILE HIS THR LEU GLY ASP ALA HIS ILE SEQRES 19 A 290 TYR LEU ASN HIS ILE GLU PRO LEU LYS ILE GLN LEU GLN SEQRES 20 A 290 ARG GLU PRO ARG PRO PHE PRO LYS LEU ARG ILE LEU ARG SEQRES 21 A 290 LYS VAL GLU LYS ILE ASP ASP PHE LYS ALA GLU ASP PHE SEQRES 22 A 290 GLN ILE GLU GLY TYR ASN PRO HIS PRO THR ILE LYS MET SEQRES 23 A 290 GLU MET ALA VAL SEQRES 1 C 290 MET PRO VAL ALA GLY SER GLU LEU GLN TYR LEU GLY GLN SEQRES 2 C 290 ILE GLN HIS ILE LEU ARG CYS GLY VAL ARG LYS ASP ASP SEQRES 3 C 290 ARG THR GLY THR GLY THR LEU SER VAL PHE GLY MET GLN SEQRES 4 C 290 ALA ARG TYR SER LEU ARG ASP GLU PHE PRO LEU LEU THR SEQRES 5 C 290 THR LYS ARG VAL PHE TRP LYS GLY VAL LEU GLU GLU LEU SEQRES 6 C 290 LEU TRP PHE ILE LYS GLY SER THR ASN ALA LYS GLU LEU SEQRES 7 C 290 SER SER LYS GLY VAL LYS ILE TRP ASP ALA ASN GLY SER SEQRES 8 C 290 ARG ASP PHE LEU ASP SER LEU GLY PHE SER THR ARG GLU SEQRES 9 C 290 GLU GLY ASP LEU GLY PRO VAL TYR GLY PHE GLN TRP ARG SEQRES 10 C 290 HIS PHE GLY ALA GLU TYR ARG ASP MET GLU SER ASP TYR SEQRES 11 C 290 SER GLY GLN GLY VAL ASP GLN LEU GLN ARG VAL ILE ASP SEQRES 12 C 290 THR ILE LYS THR ASN PRO ASP ASP ARG ARG ILE ILE MET SEQRES 13 C 290 CYS ALA TRP ASN PRO ARG ASP LEU PRO LEU MET ALA LEU SEQRES 14 C 290 PRO PRO CYS HIS ALA LEU CYS GLN PHE TYR VAL VAL ASN SEQRES 15 C 290 SER GLU LEU SER CYS GLN LEU TYR GLN ARG SER GLY ASP SEQRES 16 C 290 MET GLY LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA SEQRES 17 C 290 LEU LEU THR TYR MET ILE ALA HIS ILE THR GLY LEU LYS SEQRES 18 C 290 PRO GLY ASP PHE ILE HIS THR LEU GLY ASP ALA HIS ILE SEQRES 19 C 290 TYR LEU ASN HIS ILE GLU PRO LEU LYS ILE GLN LEU GLN SEQRES 20 C 290 ARG GLU PRO ARG PRO PHE PRO LYS LEU ARG ILE LEU ARG SEQRES 21 C 290 LYS VAL GLU LYS ILE ASP ASP PHE LYS ALA GLU ASP PHE SEQRES 22 C 290 GLN ILE GLU GLY TYR ASN PRO HIS PRO THR ILE LYS MET SEQRES 23 C 290 GLU MET ALA VAL SEQRES 1 D 290 MET PRO VAL ALA GLY SER GLU LEU GLN TYR LEU GLY GLN SEQRES 2 D 290 ILE GLN HIS ILE LEU ARG CYS GLY VAL ARG LYS ASP ASP SEQRES 3 D 290 ARG THR GLY THR GLY THR LEU SER VAL PHE GLY MET GLN SEQRES 4 D 290 ALA ARG TYR SER LEU ARG ASP GLU PHE PRO LEU LEU THR SEQRES 5 D 290 THR LYS ARG VAL PHE TRP LYS GLY VAL LEU GLU GLU LEU SEQRES 6 D 290 LEU TRP PHE ILE LYS GLY SER THR ASN ALA LYS GLU LEU SEQRES 7 D 290 SER SER LYS GLY VAL LYS ILE TRP ASP ALA ASN GLY SER SEQRES 8 D 290 ARG ASP PHE LEU ASP SER LEU GLY PHE SER THR ARG GLU SEQRES 9 D 290 GLU GLY ASP LEU GLY PRO VAL TYR GLY PHE GLN TRP ARG SEQRES 10 D 290 HIS PHE GLY ALA GLU TYR ARG ASP MET GLU SER ASP TYR SEQRES 11 D 290 SER GLY GLN GLY VAL ASP GLN LEU GLN ARG VAL ILE ASP SEQRES 12 D 290 THR ILE LYS THR ASN PRO ASP ASP ARG ARG ILE ILE MET SEQRES 13 D 290 CYS ALA TRP ASN PRO ARG ASP LEU PRO LEU MET ALA LEU SEQRES 14 D 290 PRO PRO CYS HIS ALA LEU CYS GLN PHE TYR VAL VAL ASN SEQRES 15 D 290 SER GLU LEU SER CYS GLN LEU TYR GLN ARG SER GLY ASP SEQRES 16 D 290 MET GLY LEU GLY VAL PRO PHE ASN ILE ALA SER TYR ALA SEQRES 17 D 290 LEU LEU THR TYR MET ILE ALA HIS ILE THR GLY LEU LYS SEQRES 18 D 290 PRO GLY ASP PHE ILE HIS THR LEU GLY ASP ALA HIS ILE SEQRES 19 D 290 TYR LEU ASN HIS ILE GLU PRO LEU LYS ILE GLN LEU GLN SEQRES 20 D 290 ARG GLU PRO ARG PRO PHE PRO LYS LEU ARG ILE LEU ARG SEQRES 21 D 290 LYS VAL GLU LYS ILE ASP ASP PHE LYS ALA GLU ASP PHE SEQRES 22 D 290 GLN ILE GLU GLY TYR ASN PRO HIS PRO THR ILE LYS MET SEQRES 23 D 290 GLU MET ALA VAL HET UMP B 600 20 HET 2XB B 601 30 HET UMP A 600 20 HET 2XB A 601 30 HET UMP C 600 20 HET 2XB C 601 30 HET UMP D 600 20 HET 2XB D 601 30 HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM 2XB N-{4-[(2-AMINO-4-HYDROXY-7H-PYRROLO[2,3-D]PYRIMIDIN-5- HETNAM 2 2XB YL)METHYL]BENZOYL}-L-GLUTAMIC ACID HETSYN UMP DUMP FORMUL 5 UMP 4(C9 H13 N2 O8 P) FORMUL 6 2XB 4(C19 H19 N5 O6) FORMUL 13 HOH *33(H2 O) HELIX 1 AA1 SER B 6 GLY B 44 1 16 HELIX 2 AA2 PHE B 80 LYS B 93 1 14 HELIX 3 AA3 ASN B 97 SER B 103 1 7 HELIX 4 AA4 ASP B 110 GLY B 113 5 4 HELIX 5 AA5 SER B 114 LEU B 121 1 8 HELIX 6 AA6 VAL B 134 HIS B 141 1 8 HELIX 7 AA7 ASP B 159 ASN B 171 1 13 HELIX 8 AA8 ASP B 186 MET B 190 5 5 HELIX 9 AA9 LEU B 221 GLY B 242 1 22 HELIX 10 AB1 HIS B 261 LEU B 269 1 9 HELIX 11 AB2 LYS B 287 PHE B 291 5 5 HELIX 12 AB3 LYS B 292 GLU B 294 5 3 HELIX 13 AB4 GLU A 30 GLY A 44 1 15 HELIX 14 AB5 PHE A 80 LYS A 93 1 14 HELIX 15 AB6 ASN A 97 SER A 103 1 7 HELIX 16 AB7 ASP A 110 GLY A 113 5 4 HELIX 17 AB8 SER A 114 LEU A 121 1 8 HELIX 18 AB9 VAL A 134 HIS A 141 1 8 HELIX 19 AC1 ASP A 159 ASN A 171 1 13 HELIX 20 AC2 ASP A 186 MET A 190 5 5 HELIX 21 AC3 LEU A 221 GLY A 242 1 22 HELIX 22 AC4 HIS A 261 LEU A 269 1 9 HELIX 23 AC5 LYS A 287 PHE A 291 5 5 HELIX 24 AC6 LYS A 292 GLU A 294 5 3 HELIX 25 AC7 GLU C 30 GLY C 44 1 15 HELIX 26 AC8 PHE C 80 LYS C 93 1 14 HELIX 27 AC9 ASN C 97 SER C 103 1 7 HELIX 28 AD1 SER C 114 LEU C 121 1 8 HELIX 29 AD2 VAL C 134 HIS C 141 1 8 HELIX 30 AD3 ASP C 159 ASN C 171 1 13 HELIX 31 AD4 ASP C 186 MET C 190 5 5 HELIX 32 AD5 LEU C 221 GLY C 242 1 22 HELIX 33 AD6 HIS C 261 LEU C 269 1 9 HELIX 34 AD7 LYS C 287 PHE C 291 5 5 HELIX 35 AD8 LYS C 292 GLU C 294 5 3 HELIX 36 AD9 GLU D 30 GLY D 44 1 15 HELIX 37 AE1 PHE D 80 LYS D 93 1 14 HELIX 38 AE2 ASN D 97 SER D 103 1 7 HELIX 39 AE3 SER D 114 LEU D 121 1 8 HELIX 40 AE4 VAL D 134 HIS D 141 1 8 HELIX 41 AE5 ASP D 159 ASN D 171 1 13 HELIX 42 AE6 ASP D 186 MET D 190 5 5 HELIX 43 AE7 LEU D 221 GLY D 242 1 22 HELIX 44 AE8 HIS D 261 LEU D 269 1 9 HELIX 45 AE9 LYS D 287 PHE D 291 5 5 HELIX 46 AF1 LYS D 292 GLU D 294 5 3 SHEET 1 AA1 6 VAL B 45 LYS B 47 0 SHEET 2 AA1 6 THR B 55 SER B 66 -1 O SER B 57 N VAL B 45 SHEET 3 AA1 6 LYS B 244 TYR B 258 -1 O PHE B 248 N TYR B 65 SHEET 4 AA1 6 GLU B 207 ASP B 218 1 N LEU B 208 O GLY B 246 SHEET 5 AA1 6 HIS B 196 VAL B 204 -1 N LEU B 198 O TYR B 213 SHEET 6 AA1 6 ILE B 178 CYS B 180 -1 N MET B 179 O CYS B 199 SHEET 1 AA2 2 LYS B 278 ILE B 281 0 SHEET 2 AA2 2 PHE B 296 GLU B 299 -1 O GLU B 299 N LYS B 278 SHEET 1 AA3 6 VAL A 45 LYS A 47 0 SHEET 2 AA3 6 THR A 55 SER A 66 -1 O SER A 57 N VAL A 45 SHEET 3 AA3 6 LYS A 244 TYR A 258 -1 O HIS A 250 N ALA A 63 SHEET 4 AA3 6 GLU A 207 ASP A 218 1 N LEU A 208 O GLY A 246 SHEET 5 AA3 6 HIS A 196 VAL A 204 -1 N LEU A 198 O TYR A 213 SHEET 6 AA3 6 ILE A 178 CYS A 180 -1 N MET A 179 O CYS A 199 SHEET 1 AA4 2 LYS A 278 ILE A 281 0 SHEET 2 AA4 2 PHE A 296 GLU A 299 -1 O GLU A 299 N LYS A 278 SHEET 1 AA5 6 VAL C 45 LYS C 47 0 SHEET 2 AA5 6 THR C 55 SER C 66 -1 O SER C 57 N VAL C 45 SHEET 3 AA5 6 LYS C 244 TYR C 258 -1 O PHE C 248 N TYR C 65 SHEET 4 AA5 6 GLU C 207 ASP C 218 1 N GLN C 214 O THR C 251 SHEET 5 AA5 6 HIS C 196 VAL C 204 -1 N LEU C 198 O TYR C 213 SHEET 6 AA5 6 ILE C 178 CYS C 180 -1 N MET C 179 O CYS C 199 SHEET 1 AA6 2 LYS C 278 ILE C 281 0 SHEET 2 AA6 2 PHE C 296 GLU C 299 -1 O GLU C 299 N LYS C 278 SHEET 1 AA7 6 VAL D 45 LYS D 47 0 SHEET 2 AA7 6 THR D 55 SER D 66 -1 O SER D 57 N VAL D 45 SHEET 3 AA7 6 LYS D 244 TYR D 258 -1 O PHE D 248 N TYR D 65 SHEET 4 AA7 6 GLU D 207 ASP D 218 1 N GLN D 214 O THR D 251 SHEET 5 AA7 6 HIS D 196 VAL D 204 -1 N TYR D 202 O SER D 209 SHEET 6 AA7 6 ILE D 178 CYS D 180 -1 N MET D 179 O CYS D 199 SHEET 1 AA8 2 LYS D 278 ILE D 281 0 SHEET 2 AA8 2 PHE D 296 GLU D 299 -1 O GLU D 299 N LYS D 278 SITE 1 AC1 12 ARG B 50 CYS B 195 HIS B 196 GLN B 214 SITE 2 AC1 12 ARG B 215 SER B 216 GLY B 217 ASP B 218 SITE 3 AC1 12 ASN B 226 HIS B 256 TYR B 258 2XB B 601 SITE 1 AC2 11 ILE B 108 ASN B 112 LEU B 192 ASP B 218 SITE 2 AC2 11 LEU B 221 GLY B 222 PHE B 225 TYR B 258 SITE 3 AC2 11 MET B 311 ALA B 312 UMP B 600 SITE 1 AC3 15 ARG A 50 CYS A 195 HIS A 196 GLN A 214 SITE 2 AC3 15 ARG A 215 SER A 216 GLY A 217 ASP A 218 SITE 3 AC3 15 ASN A 226 HIS A 256 TYR A 258 2XB A 601 SITE 4 AC3 15 ARG D 175 ARG D 176 HOH D 705 SITE 1 AC4 10 ILE A 108 TRP A 109 ASN A 112 LEU A 192 SITE 2 AC4 10 ASP A 218 GLY A 222 TYR A 258 MET A 311 SITE 3 AC4 10 ALA A 312 UMP A 600 SITE 1 AC5 13 ARG C 50 LEU C 192 CYS C 195 HIS C 196 SITE 2 AC5 13 GLN C 214 ARG C 215 SER C 216 GLY C 217 SITE 3 AC5 13 ASP C 218 ASN C 226 HIS C 256 TYR C 258 SITE 4 AC5 13 2XB C 601 SITE 1 AC6 9 ILE C 108 ASN C 112 ASP C 218 LEU C 221 SITE 2 AC6 9 GLY C 222 TYR C 258 MET C 311 ALA C 312 SITE 3 AC6 9 UMP C 600 SITE 1 AC7 13 ARG A 175 ARG A 176 ARG D 50 CYS D 195 SITE 2 AC7 13 HIS D 196 GLN D 214 ARG D 215 SER D 216 SITE 3 AC7 13 ASP D 218 ASN D 226 HIS D 256 TYR D 258 SITE 4 AC7 13 2XB D 601 SITE 1 AC8 10 LYS D 77 PHE D 80 ILE D 108 ASN D 112 SITE 2 AC8 10 ASP D 218 GLY D 222 PHE D 225 MET D 311 SITE 3 AC8 10 ALA D 312 UMP D 600 CRYST1 154.950 103.033 109.211 90.00 128.92 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006454 0.000000 0.005211 0.00000 SCALE2 0.000000 0.009706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011769 0.00000