HEADER METAL TRANSPORT 18-APR-19 6OM5 TITLE STRUCTURE OF A HAEMOPHORE FROM HAEMOPHILUS HAEMOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HAEMOPHORE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS HAEMOLYTICUS M19107; SOURCE 3 ORGANISM_TAXID: 726; SOURCE 4 STRAIN: M19107; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA 2 KEYWDS HAEMOPHILUS HAEMOLYTICUS, HAEMOPHORE, ANTIMICROBIAL, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.TORRADO,J.L.WALSHE,J.P.MACKAY,J.M.GUSS,D.A.GELL REVDAT 3 13-MAR-24 6OM5 1 REMARK REVDAT 2 11-MAR-20 6OM5 1 JRNL REVDAT 1 04-DEC-19 6OM5 0 JRNL AUTH R.D.LATHAM,M.TORRADO,B.ATTO,J.L.WALSHE,R.WILSON,J.M.GUSS, JRNL AUTH 2 J.P.MACKAY,S.TRISTRAM,D.A.GELL JRNL TITL A HEME-BINDING PROTEIN PRODUCED BY HAEMOPHILUS HAEMOLYTICUS JRNL TITL 2 INHIBITS NON-TYPEABLE HAEMOPHILUS INFLUENZAE. JRNL REF MOL.MICROBIOL. V. 113 381 2020 JRNL REFN ESSN 1365-2958 JRNL PMID 31742788 JRNL DOI 10.1111/MMI.14426 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 58934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3056 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4321 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1915 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.088 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2109 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1943 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2858 ; 1.453 ; 1.679 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4531 ; 0.484 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 7.008 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;32.928 ;23.804 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;11.958 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.193 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 267 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2386 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 427 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1047 ; 1.822 ; 2.474 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1042 ; 1.811 ; 2.471 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1321 ; 2.571 ; 3.708 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1318 ; 2.556 ; 3.706 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1062 ; 3.031 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1063 ; 3.029 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1538 ; 4.642 ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2300 ; 5.771 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2301 ; 5.770 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 6OM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.45866, 0.95372 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62031 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.00 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, PARROT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL CRYSTALS WITH ORANGE-RED COLOUR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.5, 2 M AMMONIUM SULFATE, 30 MM SODIUM PHOSPHATE, 72 MM NACL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.98933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.49467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.49467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.98933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 303 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 44 O HOH A 401 2.16 REMARK 500 O HOH A 442 O HOH A 444 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 242 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 93 -58.81 -120.97 REMARK 500 TYR A 181 63.10 -105.08 REMARK 500 LYS A 260 73.02 -153.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 NE2 REMARK 620 2 HEM A 301 NA 92.4 REMARK 620 3 HEM A 301 NB 93.0 89.5 REMARK 620 4 HEM A 301 NC 89.6 177.4 88.8 REMARK 620 5 HEM A 301 ND 89.5 90.8 177.4 90.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 310 DBREF 6OM5 A 1 272 PDB 6OM5 6OM5 1 272 SEQRES 1 A 254 GLY SER HIS MET GLN VAL VAL GLY ASN VAL SER THR ASP SEQRES 2 A 254 THR ASN GLN THR ARG TYR ILE LYS ILE LYS ALA GLY GLU SEQRES 3 A 254 LYS ASP GLY LYS ALA GLY VAL GLU ILE TYR ASP SER SER SEQRES 4 A 254 ILE PRO ASN ASP PRO ALA VAL LEU SER LYS THR ALA ASN SEQRES 5 A 254 ASN LYS GLY GLN SER PHE GLU LYS MET ALA GLU ARG ALA SEQRES 6 A 254 ASP LYS TRP ILE SER HIS LEU THR GLY VAL ALA LYS LYS SEQRES 7 A 254 ASP LYS ASN GLY VAL ILE VAL ALA LYS MET ASN LYS MET SEQRES 8 A 254 PRO ASN LEU THR LEU ILE MET PRO ASP HIS ARG GLY LEU SEQRES 9 A 254 GLY ARG LEU SER PHE LYS GLN VAL GLY ASN GLN ASP THR SEQRES 10 A 254 TYR PHE GLY GLU TRP GLU ASN VAL ASP ALA ALA THR SER SEQRES 11 A 254 ALA ALA LYS ASN VAL SER VAL TYR TYR ALA GLY SER ASP SEQRES 12 A 254 PRO THR LYS THR LEU PRO SER GLY LYS ALA THR TYR THR SEQRES 13 A 254 VAL GLU GLY ILE ASN LYS TYR GLY ASN PHE ASN SER ARG SEQRES 14 A 254 LEU MET LYS GLY THR PHE ASP VAL ASP PHE GLU ARG ALA SEQRES 15 A 254 SER ILE SER GLY TYR LEU SER LYS PRO ASN LEU SER LEU SEQRES 16 A 254 SER ILE GLU SER LYS ILE ASP LYS THR ASN ALA THR PHE SEQRES 17 A 254 GLU GLY ILE ALA LYS ALA GLU GLY VAL ILE GLY LYS SER SEQRES 18 A 254 GLU GLY ARG PHE TYR GLY ALA LYS ALA GLU GLY LEU ALA SEQRES 19 A 254 GLY MET ALA THR PHE ALA SER LYS PRO GLU TYR ASN THR SEQRES 20 A 254 ALA PHE GLY GLY THR LYS ASN HET HEM A 301 43 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET CL A 305 1 HET CL A 306 1 HET GOL A 307 6 HET GOL A 308 6 HET GOL A 309 6 HET GOL A 310 6 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 CL 2(CL 1-) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 12 HOH *170(H2 O) HELIX 1 AA1 ASP A 61 THR A 68 1 8 HELIX 2 AA2 PHE A 76 TRP A 86 1 11 HELIX 3 AA3 ILE A 87 LEU A 90 5 4 HELIX 4 AA4 ASN A 107 MET A 109 5 3 HELIX 5 AA5 THR A 147 ASN A 152 1 6 HELIX 6 AA6 LYS A 260 ASN A 264 5 5 SHEET 1 AA1 6 VAL A 25 SER A 29 0 SHEET 2 AA1 6 SER A 154 GLY A 159 -1 O VAL A 155 N SER A 29 SHEET 3 AA1 6 THR A 135 GLU A 141 -1 N TYR A 136 O ALA A 158 SHEET 4 AA1 6 ARG A 124 GLN A 129 -1 N ARG A 124 O GLU A 141 SHEET 5 AA1 6 ILE A 102 LYS A 105 -1 N ILE A 102 O PHE A 127 SHEET 6 AA1 6 ALA A 94 LYS A 96 -1 N LYS A 95 O VAL A 103 SHEET 1 AA2 3 ARG A 36 ILE A 40 0 SHEET 2 AA2 3 GLY A 50 ASP A 55 -1 O TYR A 54 N TYR A 37 SHEET 3 AA2 3 GLN A 74 SER A 75 -1 O GLN A 74 N VAL A 51 SHEET 1 AA3 9 LYS A 170 ILE A 178 0 SHEET 2 AA3 9 MET A 189 ASP A 196 -1 O VAL A 195 N ALA A 171 SHEET 3 AA3 9 SER A 201 LYS A 208 -1 O SER A 203 N ASP A 194 SHEET 4 AA3 9 LEU A 211 ASP A 220 -1 O LEU A 213 N LEU A 206 SHEET 5 AA3 9 THR A 225 ALA A 232 -1 O THR A 225 N ASP A 220 SHEET 6 AA3 9 VAL A 235 TYR A 244 -1 O GLY A 237 N ALA A 230 SHEET 7 AA3 9 GLY A 250 THR A 256 -1 O THR A 256 N LYS A 238 SHEET 8 AA3 9 THR A 265 LYS A 271 -1 O PHE A 267 N GLY A 253 SHEET 9 AA3 9 LYS A 170 ILE A 178 -1 N ILE A 178 O ALA A 266 LINK NE2 HIS A 119 FE HEM A 301 1555 1555 2.03 SITE 1 AC1 15 GLU A 44 LYS A 45 VAL A 51 GLN A 74 SITE 2 AC1 15 MET A 79 ARG A 82 MET A 106 THR A 113 SITE 3 AC1 15 ILE A 115 PRO A 117 HIS A 119 LEU A 122 SITE 4 AC1 15 LEU A 125 CL A 306 GOL A 309 SITE 1 AC2 6 LYS A 180 LYS A 208 ASN A 210 HOH A 420 SITE 2 AC2 6 HOH A 444 HOH A 445 SITE 1 AC3 3 LYS A 67 LYS A 231 ILE A 236 SITE 1 AC4 11 GLY A 237 LYS A 238 THR A 256 PHE A 257 SITE 2 AC4 11 ALA A 258 HOH A 455 HOH A 456 HOH A 498 SITE 3 AC4 11 HOH A 516 HOH A 529 HOH A 533 SITE 1 AC5 2 LYS A 95 ASN A 185 SITE 1 AC6 3 GLN A 74 ARG A 82 HEM A 301 SITE 1 AC7 8 LYS A 128 GLN A 129 GLY A 131 PHE A 137 SITE 2 AC7 8 THR A 174 GLU A 176 GLY A 268 THR A 270 SITE 1 AC8 7 PRO A 59 ASN A 60 SER A 207 LYS A 208 SITE 2 AC8 7 PRO A 209 HOH A 411 HOH A 460 SITE 1 AC9 4 ARG A 82 LYS A 85 TRP A 86 HEM A 301 SITE 1 AD1 3 GLN A 23 ASN A 223 ARG A 242 CRYST1 91.043 91.043 97.484 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010984 0.006342 0.000000 0.00000 SCALE2 0.000000 0.012683 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010258 0.00000