HEADER TRANSFERASE 18-APR-19 6OMK TITLE CRYSTAL STRUCTURE OF A GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE (N- TITLE 2 MYRISTOYL TRANSFERASE, NMT) FROM LEISHMANIA MAJOR FRIEDLIN BOUND TO TITLE 3 TETRADECANOYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 6-421; COMPND 5 EC: 2.3.1.97; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 STRAIN: FRIEDLIN; SOURCE 5 GENE: NMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NIAID, STRUCTURAL GENOMICS, SVTD, SDDC, NMT1, MYRISTIC ACID, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6OMK 1 REMARK REVDAT 1 01-MAY-19 6OMK 0 JRNL AUTH T.E.EDWARDS,P.S.HORANYI,B.A.BERTOLIN,D.D.LORIMER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 3 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A GLYCYLPEPTIDE JRNL TITL 2 N-TETRADECANOYLTRANSFERASE (N-MYRISTOYL TRANSFERASE, NMT) JRNL TITL 3 FROM LEISHMANIA MAJOR FRIEDLIN BOUND TO TETRADECANOYL-COA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15_3459) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.360 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5950 - 5.0589 1.00 1662 183 0.1917 0.2426 REMARK 3 2 5.0589 - 4.0162 1.00 1611 144 0.1488 0.1972 REMARK 3 3 4.0162 - 3.5088 1.00 1575 145 0.1491 0.2247 REMARK 3 4 3.5088 - 3.1881 1.00 1574 142 0.1568 0.2102 REMARK 3 5 3.1881 - 2.9596 1.00 1565 155 0.1639 0.2145 REMARK 3 6 2.9596 - 2.7851 1.00 1538 148 0.1699 0.2317 REMARK 3 7 2.7851 - 2.6457 1.00 1576 126 0.1712 0.2283 REMARK 3 8 2.6457 - 2.5305 1.00 1536 153 0.1796 0.2435 REMARK 3 9 2.5305 - 2.4331 1.00 1533 136 0.1841 0.2909 REMARK 3 10 2.4331 - 2.3492 1.00 1548 137 0.1850 0.2478 REMARK 3 11 2.3492 - 2.2757 1.00 1555 144 0.1870 0.2738 REMARK 3 12 2.2757 - 2.2107 1.00 1532 146 0.1889 0.2753 REMARK 3 13 2.2107 - 2.1525 1.00 1554 107 0.1839 0.2446 REMARK 3 14 2.1525 - 2.0999 1.00 1555 134 0.2122 0.3099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2282 -10.4795 -14.5209 REMARK 3 T TENSOR REMARK 3 T11: 0.1440 T22: 0.2246 REMARK 3 T33: 0.1357 T12: 0.0161 REMARK 3 T13: 0.0208 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.1712 L22: 3.5992 REMARK 3 L33: 2.5608 L12: 0.0296 REMARK 3 L13: 0.1414 L23: 0.4388 REMARK 3 S TENSOR REMARK 3 S11: 0.0981 S12: 0.3001 S13: 0.0602 REMARK 3 S21: -0.1879 S22: -0.0548 S23: 0.0019 REMARK 3 S31: -0.0506 S32: 0.0300 S33: -0.0457 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5109 3.8940 -1.7083 REMARK 3 T TENSOR REMARK 3 T11: 0.2309 T22: 0.1263 REMARK 3 T33: 0.1554 T12: 0.0506 REMARK 3 T13: -0.0045 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 3.2361 L22: 2.0099 REMARK 3 L33: 6.4024 L12: 0.5704 REMARK 3 L13: -3.1070 L23: 1.3251 REMARK 3 S TENSOR REMARK 3 S11: 0.0737 S12: 0.1086 S13: 0.1894 REMARK 3 S21: -0.2447 S22: -0.0520 S23: 0.0861 REMARK 3 S31: -0.2758 S32: -0.2855 S33: -0.0240 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4656 -2.7805 10.2077 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.1673 REMARK 3 T33: 0.1724 T12: -0.0140 REMARK 3 T13: 0.0214 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.9301 L22: 1.5709 REMARK 3 L33: 1.6545 L12: 0.0390 REMARK 3 L13: -0.0642 L23: 0.3790 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: -0.0091 S13: 0.0521 REMARK 3 S21: -0.0368 S22: -0.0442 S23: 0.1165 REMARK 3 S31: -0.1294 S32: -0.0555 S33: -0.0087 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8549 -15.9550 -15.2487 REMARK 3 T TENSOR REMARK 3 T11: 0.2279 T22: 0.2701 REMARK 3 T33: 0.2058 T12: 0.0074 REMARK 3 T13: -0.0652 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.0725 L22: 1.9680 REMARK 3 L33: 0.4504 L12: -0.5015 REMARK 3 L13: -0.2456 L23: -0.8136 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: 0.3057 S13: -0.2151 REMARK 3 S21: -0.6161 S22: -0.1180 S23: 0.2127 REMARK 3 S31: 0.0400 S32: -0.1066 S33: 0.1519 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9791 -5.5593 -10.2025 REMARK 3 T TENSOR REMARK 3 T11: 0.1968 T22: 0.2672 REMARK 3 T33: 0.2193 T12: -0.0083 REMARK 3 T13: 0.0793 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 1.7405 L22: 2.0067 REMARK 3 L33: 1.8230 L12: -0.0050 REMARK 3 L13: -0.0024 L23: 0.2421 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: 0.2364 S13: 0.1547 REMARK 3 S21: -0.3310 S22: -0.0342 S23: -0.3664 REMARK 3 S31: -0.0876 S32: 0.3376 S33: -0.0425 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OMK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240977. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5406 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23914 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.585 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.875 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.03 REMARK 200 R MERGE FOR SHELL (I) : 0.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3H5Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LEMAA.18219.A.B1.PS38467 AT 3.52 MG/ML REMARK 280 WITH 0.5 MM MYRISTOYL COA (TETRADECANOYL COA) AGAINST 16% PEG REMARK 280 3350, 0.2 M NACL, 0.1 M SODIUM CACODYLATE PH 5.6, SUPPLEMENTED REMARK 280 WITH 20% ETHYLENE GLYCOL AS CRYO-PROTECTANT, CRYSTAL TRACKING ID REMARK 280 303026D4, UNIQUE PUCK ID VLE8-4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.62500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.18000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.18000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.62500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 HIS A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 ALA A 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 4 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 VAL A 143 CG1 CG2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 GLN A 240 CG CD OE1 NE2 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 GLN A 243 CG CD OE1 NE2 REMARK 470 ARG A 251 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 ASN A 315 CG OD1 ND2 REMARK 470 VAL A 316 CG1 CG2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 LYS A 318 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 603 O HOH A 743 2.14 REMARK 500 O ASP A 158 O HOH A 601 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 135 30.35 -145.79 REMARK 500 TYR A 157 41.35 -108.58 REMARK 500 ILE A 163 -169.05 -126.98 REMARK 500 GLN A 240 12.05 -69.58 REMARK 500 VAL A 307 -66.41 -129.23 REMARK 500 VAL A 316 106.27 70.17 REMARK 500 LYS A 317 -59.53 80.27 REMARK 500 HIS A 347 -135.13 -111.20 REMARK 500 GLU A 379 41.57 -74.80 REMARK 500 LEU A 381 -135.65 51.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 NE2 REMARK 620 2 HIS A 3 ND1 129.5 REMARK 620 3 HIS A 70 ND1 80.9 61.3 REMARK 620 4 GLU A 94 OE2 77.3 62.1 5.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H5Z RELATED DB: PDB REMARK 900 SIMILAR STRUCTURE BUT WITH DIFFERENT PROTEIN CONSTRUCT REMARK 900 RELATED ID: SSGCID-LEMAA.18219.A RELATED DB: TARGETTRACK DBREF 6OMK A 6 421 UNP Q9GPZ4 Q9GPZ4_LEIMA 6 421 SEQADV 6OMK MET A -2 UNP Q9GPZ4 INITIATING METHIONINE SEQADV 6OMK ALA A -1 UNP Q9GPZ4 EXPRESSION TAG SEQADV 6OMK HIS A 0 UNP Q9GPZ4 EXPRESSION TAG SEQADV 6OMK HIS A 1 UNP Q9GPZ4 EXPRESSION TAG SEQADV 6OMK HIS A 2 UNP Q9GPZ4 EXPRESSION TAG SEQADV 6OMK HIS A 3 UNP Q9GPZ4 EXPRESSION TAG SEQADV 6OMK HIS A 4 UNP Q9GPZ4 EXPRESSION TAG SEQADV 6OMK HIS A 5 UNP Q9GPZ4 EXPRESSION TAG SEQRES 1 A 424 MET ALA HIS HIS HIS HIS HIS HIS SER ASN SER ASP ALA SEQRES 2 A 424 ALA HIS ALA PHE TRP SER THR GLN PRO VAL PRO GLN THR SEQRES 3 A 424 GLU ASP GLU THR GLU LYS ILE VAL PHE ALA GLY PRO MET SEQRES 4 A 424 ASP GLU PRO LYS THR VAL ALA ASP ILE PRO GLU GLU PRO SEQRES 5 A 424 TYR PRO ILE ALA SER THR PHE GLU TRP TRP THR PRO ASN SEQRES 6 A 424 MET GLU ALA ALA ASP ASP ILE HIS ALA ILE TYR GLU LEU SEQRES 7 A 424 LEU ARG ASP ASN TYR VAL GLU ASP ASP ASP SER MET PHE SEQRES 8 A 424 ARG PHE ASN TYR SER GLU GLU PHE LEU GLN TRP ALA LEU SEQRES 9 A 424 CYS PRO PRO ASN TYR ILE PRO ASP TRP HIS VAL ALA VAL SEQRES 10 A 424 ARG ARG LYS ALA ASP LYS LYS LEU LEU ALA PHE ILE ALA SEQRES 11 A 424 GLY VAL PRO VAL THR LEU ARG MET GLY THR PRO LYS TYR SEQRES 12 A 424 MET LYS VAL LYS ALA GLN GLU LYS GLY GLU GLY GLU GLU SEQRES 13 A 424 ALA ALA LYS TYR ASP GLU PRO ARG HIS ILE CYS GLU ILE SEQRES 14 A 424 ASN PHE LEU CYS VAL HIS LYS GLN LEU ARG GLU LYS ARG SEQRES 15 A 424 LEU ALA PRO ILE LEU ILE LYS GLU ALA THR ARG ARG VAL SEQRES 16 A 424 ASN ARG THR ASN VAL TRP GLN ALA VAL TYR THR ALA GLY SEQRES 17 A 424 VAL LEU LEU PRO THR PRO TYR ALA SER GLY GLN TYR PHE SEQRES 18 A 424 HIS ARG SER LEU ASN PRO GLU LYS LEU VAL GLU ILE ARG SEQRES 19 A 424 PHE SER GLY ILE PRO ALA GLN TYR GLN LYS PHE GLN ASN SEQRES 20 A 424 PRO MET ALA MET LEU LYS ARG ASN TYR GLN LEU PRO SER SEQRES 21 A 424 ALA PRO LYS ASN SER GLY LEU ARG GLU MET LYS PRO SER SEQRES 22 A 424 ASP VAL PRO GLN VAL ARG ARG ILE LEU MET ASN TYR LEU SEQRES 23 A 424 ASP SER PHE ASP VAL GLY PRO VAL PHE SER ASP ALA GLU SEQRES 24 A 424 ILE SER HIS TYR LEU LEU PRO ARG ASP GLY VAL VAL PHE SEQRES 25 A 424 THR TYR VAL VAL GLU ASN VAL LYS LYS VAL THR ASP PHE SEQRES 26 A 424 PHE SER PHE TYR ARG ILE PRO SER THR VAL ILE GLY ASN SEQRES 27 A 424 SER ASN TYR ASN LEU LEU ASN ALA ALA TYR VAL HIS TYR SEQRES 28 A 424 TYR ALA ALA THR SER ILE PRO LEU HIS GLN LEU ILE LEU SEQRES 29 A 424 ASP LEU LEU ILE VAL ALA HIS SER ARG GLY PHE ASP VAL SEQRES 30 A 424 CYS ASN MET VAL GLU ILE LEU ASP ASN ARG SER PHE VAL SEQRES 31 A 424 GLU GLN LEU LYS PHE GLY PRO GLY ASP GLY HIS LEU ARG SEQRES 32 A 424 TYR TYR PHE TYR ASN TRP ALA TYR PRO LYS ILE LYS PRO SEQRES 33 A 424 SER GLN VAL ALA LEU VAL MET LEU HET MYA A 501 63 HET ZN A 502 1 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HETNAM MYA TETRADECANOYL-COA HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN MYA MYRISTOYL-COA HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MYA C35 H62 N7 O17 P3 S FORMUL 3 ZN ZN 2+ FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 HOH *219(H2 O) HELIX 1 AA1 PHE A 14 GLN A 18 5 5 HELIX 2 AA2 THR A 23 ILE A 30 1 8 HELIX 3 AA3 THR A 41 ILE A 45 5 5 HELIX 4 AA4 ALA A 65 TYR A 80 1 16 HELIX 5 AA5 SER A 93 CYS A 102 1 10 HELIX 6 AA6 ILE A 107 ASP A 109 5 3 HELIX 7 AA7 PRO A 138 LYS A 148 1 11 HELIX 8 AA8 GLU A 150 ALA A 155 1 6 HELIX 9 AA9 LYS A 173 ARG A 176 5 4 HELIX 10 AB1 ARG A 179 ARG A 194 1 16 HELIX 11 AB2 ASN A 223 ILE A 230 1 8 HELIX 12 AB3 PRO A 236 PHE A 242 5 7 HELIX 13 AB4 ASN A 244 TYR A 253 1 10 HELIX 14 AB5 LYS A 268 SER A 270 5 3 HELIX 15 AB6 ASP A 271 ASP A 284 1 14 HELIX 16 AB7 SER A 293 LEU A 302 1 10 HELIX 17 AB8 PRO A 355 ARG A 370 1 16 HELIX 18 AB9 ASP A 382 VAL A 387 5 6 HELIX 19 AC1 LYS A 412 VAL A 416 5 5 SHEET 1 AA112 PHE A 56 TRP A 59 0 SHEET 2 AA112 HIS A 111 ARG A 116 -1 O ARG A 115 N GLU A 57 SHEET 3 AA112 LEU A 122 ARG A 134 -1 O ILE A 126 N VAL A 112 SHEET 4 AA112 ARG A 161 VAL A 171 -1 O ARG A 161 N LEU A 133 SHEET 5 AA112 ALA A 200 ALA A 204 1 O VAL A 201 N CYS A 164 SHEET 6 AA112 GLY A 393 TYR A 404 -1 O TYR A 404 N ALA A 200 SHEET 7 AA112 ALA A 213 SER A 221 -1 N HIS A 219 O GLY A 393 SHEET 8 AA112 VAL A 374 VAL A 378 -1 O MET A 377 N PHE A 218 SHEET 9 AA112 LEU A 340 ALA A 351 1 N ALA A 344 O ASN A 376 SHEET 10 AA112 ASP A 321 VAL A 332 -1 N SER A 330 O LEU A 341 SHEET 11 AA112 VAL A 308 VAL A 313 -1 N PHE A 309 O PHE A 325 SHEET 12 AA112 LEU A 264 GLU A 266 -1 N ARG A 265 O VAL A 312 SHEET 1 AA210 PHE A 88 PHE A 90 0 SHEET 2 AA210 ASP A 321 VAL A 332 -1 O THR A 331 N ARG A 89 SHEET 3 AA210 LEU A 340 ALA A 351 -1 O LEU A 341 N SER A 330 SHEET 4 AA210 VAL A 374 VAL A 378 1 O ASN A 376 N ALA A 344 SHEET 5 AA210 ALA A 213 SER A 221 -1 N PHE A 218 O MET A 377 SHEET 6 AA210 GLY A 393 TYR A 404 -1 O GLY A 393 N HIS A 219 SHEET 7 AA210 ALA A 200 ALA A 204 -1 N ALA A 200 O TYR A 404 SHEET 8 AA210 ARG A 161 VAL A 171 1 N CYS A 164 O VAL A 201 SHEET 9 AA210 LEU A 122 ARG A 134 -1 N LEU A 133 O ARG A 161 SHEET 10 AA210 GLY A 289 PRO A 290 -1 O GLY A 289 N ARG A 134 LINK NE2 HIS A 1 ZN ZN A 502 1555 1555 2.14 LINK ND1 HIS A 3 ZN ZN A 502 1555 1555 2.19 LINK ND1 HIS A 70 ZN ZN A 502 1555 4545 2.15 LINK OE2 GLU A 94 ZN ZN A 502 1555 4545 2.00 CISPEP 1 PRO A 209 THR A 210 0 -13.19 SITE 1 AC1 35 HIS A 12 ALA A 13 PHE A 14 TRP A 15 SITE 2 AC1 35 TYR A 80 VAL A 81 ASN A 167 PHE A 168 SITE 3 AC1 35 LEU A 169 CYS A 170 VAL A 171 ARG A 176 SITE 4 AC1 35 GLU A 177 LYS A 178 ARG A 179 LEU A 180 SITE 5 AC1 35 ALA A 181 PRO A 182 THR A 189 VAL A 192 SITE 6 AC1 35 TRP A 198 ALA A 200 TYR A 202 THR A 203 SITE 7 AC1 35 LEU A 208 TYR A 404 HOH A 643 HOH A 648 SITE 8 AC1 35 HOH A 653 HOH A 667 HOH A 688 HOH A 698 SITE 9 AC1 35 HOH A 704 HOH A 713 HOH A 718 SITE 1 AC2 4 HIS A 1 HIS A 3 HIS A 70 GLU A 94 SITE 1 AC3 3 ALA A 71 ARG A 115 LYS A 120 SITE 1 AC4 6 GLU A 165 PHE A 292 TYR A 300 TYR A 348 SITE 2 AC4 6 VAL A 419 HOH A 639 SITE 1 AC5 3 SER A 214 ARG A 400 LYS A 410 CRYST1 49.250 89.170 90.360 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020305 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011067 0.00000