HEADER UNKNOWN FUNCTION 19-APR-19 6OMX TITLE CRYSTAL STRUCTURE OF ALR5209, A PENTAPEPTIDE REPEAT PROTEIN FROM TITLE 2 NOSTOC PCC 7120, DETERMINED AT 1.7 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALR5209 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC SP. (STRAIN PCC 7120 / SAG 25.82 / UTEX SOURCE 3 2576); SOURCE 4 ORGANISM_TAXID: 103690; SOURCE 5 STRAIN: PCC 7120 / SAG 25.82 / UTEX 2576; SOURCE 6 GENE: ALR5209; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PENTAPEPTIDE REPEAT, PROTEIN REPEAT, FIVE RESIDUE RIGHT-HANDED BETA KEYWDS 2 HELIX, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.A.KENNEDY,R.ZHANG REVDAT 4 11-OCT-23 6OMX 1 REMARK REVDAT 3 12-AUG-20 6OMX 1 JRNL REVDAT 2 11-MAR-20 6OMX 1 JRNL REVDAT 1 23-OCT-19 6OMX 0 JRNL AUTH R.ZHANG,S.NI,M.A.KENNEDY JRNL TITL CRYSTAL STRUCTURE OF ALR1298, A PENTAPEPTIDE REPEAT PROTEIN JRNL TITL 2 FROM THE CYANOBACTERIUM NOSTOC SP. PCC 7120, DETERMINED AT JRNL TITL 3 2.1 ANGSTROM RESOLUTION. JRNL REF PROTEINS V. 88 1143 2020 JRNL REFN ESSN 1097-0134 JRNL PMID 32092202 JRNL DOI 10.1002/PROT.25882 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 13583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5082 - 3.6752 0.97 1313 147 0.1755 0.2183 REMARK 3 2 3.6752 - 2.9175 0.99 1250 139 0.2308 0.2217 REMARK 3 3 2.9175 - 2.5489 0.99 1229 137 0.2331 0.2927 REMARK 3 4 2.5489 - 2.3159 0.99 1220 135 0.2207 0.2378 REMARK 3 5 2.3159 - 2.1499 0.96 1180 131 0.2176 0.2643 REMARK 3 6 2.1499 - 2.0232 0.99 1212 135 0.2274 0.2835 REMARK 3 7 2.0232 - 1.9218 0.99 1213 135 0.2519 0.3079 REMARK 3 8 1.9218 - 1.8382 1.00 1196 132 0.2771 0.3240 REMARK 3 9 1.8382 - 1.7674 0.99 1209 135 0.2857 0.3311 REMARK 3 10 1.7674 - 1.7064 0.99 1202 133 0.3315 0.3838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 933 REMARK 3 ANGLE : 1.112 1258 REMARK 3 CHIRALITY : 0.053 144 REMARK 3 PLANARITY : 0.007 171 REMARK 3 DIHEDRAL : 12.192 576 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -16.2417 -4.6011 -12.2669 REMARK 3 T TENSOR REMARK 3 T11: 0.2170 T22: 0.2107 REMARK 3 T33: 0.2838 T12: -0.0295 REMARK 3 T13: -0.0076 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 4.8676 L22: 5.5351 REMARK 3 L33: 1.8702 L12: 2.2481 REMARK 3 L13: -0.1025 L23: -1.3927 REMARK 3 S TENSOR REMARK 3 S11: 0.2954 S12: -0.1385 S13: -0.1870 REMARK 3 S21: 0.4556 S22: -0.2641 S23: 0.0443 REMARK 3 S31: -0.1669 S32: 0.0766 S33: -0.0114 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000240992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.1.7 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13612 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 46.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES 1.1.5 REMARK 200 STARTING MODEL: 2J8K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.075 M SODIUM CITRATE TRIBASIC DIHYDRATE PH 5.6, REMARK 280 1.5 M AMMONIUM SULFATE, 25% V/V GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.41850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 30.41850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 TYR A 6 REMARK 465 GLU A 128 REMARK 465 GLN A 129 DBREF 6OMX A 1 129 UNP Q8YLT7 Q8YLT7_NOSS1 1 129 SEQADV 6OMX MET A -19 UNP Q8YLT7 INITIATING METHIONINE SEQADV 6OMX GLY A -18 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX SER A -17 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX SER A -16 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX HIS A -15 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX HIS A -14 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX HIS A -13 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX HIS A -12 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX HIS A -11 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX HIS A -10 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX SER A -9 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX SER A -8 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX GLY A -7 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX LEU A -6 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX VAL A -5 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX PRO A -4 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX ARG A -3 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX GLY A -2 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX SER A -1 UNP Q8YLT7 EXPRESSION TAG SEQADV 6OMX HIS A 0 UNP Q8YLT7 EXPRESSION TAG SEQRES 1 A 149 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 149 LEU VAL PRO ARG GLY SER HIS MET SER GLU VAL ASN TYR SEQRES 3 A 149 GLN GLN PRO ILE SER THR VAL ALA THR LEU ILE GLU MET SEQRES 4 A 149 TYR THR ALA GLY ARG ARG ASP PHE ASN ARG ALA GLU LEU SEQRES 5 A 149 GLY ASP ALA ASN LEU GLN ASN VAL ASP ILE LYS GLY SER SEQRES 6 A 149 ASP LEU SER TYR ALA ASP LEU SER THR ALA ASN LEU ARG SEQRES 7 A 149 GLY ALA ASN LEU ARG GLY THR ASP LEU SER PHE ALA ASP SEQRES 8 A 149 LEU SER GLN ALA ASP LEU GLN ASP ALA ASP LEU ARG GLY SEQRES 9 A 149 ALA LEU LEU MET SER ALA ASN LEU ARG GLN ALA ASN LEU SEQRES 10 A 149 GLN GLY ALA LYS LEU GLU LYS ALA ASP CYS ASP ARG ASN SEQRES 11 A 149 THR HIS PHE PRO GLU ASN PHE ASP LEU LEU LYS ALA GLY SEQRES 12 A 149 LEU GLN LEU LYS GLU GLN FORMUL 2 HOH *13(H2 O) HELIX 1 AA1 THR A 12 ALA A 22 1 11 HELIX 2 AA2 ASP A 118 GLY A 123 1 6 SHEET 1 AA1 2 ASP A 106 CYS A 107 0 SHEET 2 AA1 2 GLN A 125 LEU A 126 1 O GLN A 125 N CYS A 107 CRYST1 71.001 27.835 60.837 90.00 90.00 90.00 P 2 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014084 0.000000 0.000000 0.00000 SCALE2 0.000000 0.035926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016437 0.00000