HEADER LIGASE 19-APR-19 6OMZ TITLE CRYSTAL STRUCTURE OF DIHYDROPTEROATE SYNTHASE FROM MYCOBACTERIUM TITLE 2 SMEGMATIS WITH BOUND 6-HYDROXYMETHYLPTERIN-MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROPTEROATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYSMA.01019.B.B2; COMPND 5 SYNONYM: DHPS,DIHYDROPTEROATE PYROPHOSPHORYLASE; COMPND 6 EC: 2.5.1.15; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS (STRAIN MKD8); SOURCE 3 ORGANISM_TAXID: 1214915; SOURCE 4 STRAIN: MKD8; SOURCE 5 VARIANT: MKD8; SOURCE 6 GENE: D806_059810; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VARIANT: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: MYSMA.01019.B.B1 KEYWDS SSGCID, PMM, DIHYDROPTEROATE SYNTHASE, PTP, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6OMZ 1 REMARK REVDAT 1 08-MAY-19 6OMZ 0 JRNL AUTH M.J.BOLEJACK,D.M.DRANOW,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF DIHYDROPTEROATE SYNTHASE FROM JRNL TITL 2 MYCOBACTERIUM SMEGMATIS WITH BOUND JRNL TITL 3 6-HYDROXYMETHYLPTERIN-MONOPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 26556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9088 - 4.5589 1.00 1766 164 0.1500 0.1658 REMARK 3 2 4.5589 - 3.6200 1.00 1693 145 0.1238 0.1463 REMARK 3 3 3.6200 - 3.1628 1.00 1680 123 0.1393 0.1788 REMARK 3 4 3.1628 - 2.8738 1.00 1678 143 0.1487 0.1997 REMARK 3 5 2.8738 - 2.6679 1.00 1650 139 0.1546 0.2007 REMARK 3 6 2.6679 - 2.5107 1.00 1668 133 0.1507 0.1889 REMARK 3 7 2.5107 - 2.3850 1.00 1636 162 0.1485 0.1862 REMARK 3 8 2.3850 - 2.2812 1.00 1658 133 0.1488 0.1726 REMARK 3 9 2.2812 - 2.1934 1.00 1630 157 0.1524 0.1846 REMARK 3 10 2.1934 - 2.1177 1.00 1636 144 0.1583 0.2090 REMARK 3 11 2.1177 - 2.0515 1.00 1630 136 0.1687 0.1984 REMARK 3 12 2.0515 - 1.9929 1.00 1632 117 0.1773 0.2364 REMARK 3 13 1.9929 - 1.9404 0.99 1653 155 0.1776 0.2336 REMARK 3 14 1.9404 - 1.8931 0.92 1497 123 0.1986 0.2710 REMARK 3 15 1.8931 - 1.8501 0.84 1355 120 0.2207 0.2547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2145 REMARK 3 ANGLE : 0.806 2927 REMARK 3 CHIRALITY : 0.058 336 REMARK 3 PLANARITY : 0.005 402 REMARK 3 DIHEDRAL : 13.696 1273 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5409 58.4430 15.2154 REMARK 3 T TENSOR REMARK 3 T11: 0.1401 T22: 0.0639 REMARK 3 T33: 0.1245 T12: -0.0251 REMARK 3 T13: -0.0066 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 2.9973 L22: 8.6139 REMARK 3 L33: 6.0894 L12: -4.7842 REMARK 3 L13: -2.4562 L23: 2.1335 REMARK 3 S TENSOR REMARK 3 S11: 0.2326 S12: 0.2924 S13: 0.3645 REMARK 3 S21: 0.0049 S22: -0.2384 S23: -0.1680 REMARK 3 S31: -0.0223 S32: -0.2341 S33: 0.0267 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3551 57.4546 17.6974 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.2256 REMARK 3 T33: 0.2444 T12: -0.0401 REMARK 3 T13: -0.0113 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 7.3448 L22: 4.7644 REMARK 3 L33: 1.9892 L12: -5.8404 REMARK 3 L13: -0.9406 L23: 0.9889 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: 0.3633 S13: -0.2398 REMARK 3 S21: -0.0550 S22: -0.1826 S23: 0.6632 REMARK 3 S31: 0.0424 S32: -0.4716 S33: 0.1605 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4124 66.7654 15.0968 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.1382 REMARK 3 T33: 0.1603 T12: 0.0163 REMARK 3 T13: 0.0441 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 2.6281 L22: 0.5128 REMARK 3 L33: 3.2272 L12: 0.9320 REMARK 3 L13: 0.0414 L23: 0.7799 REMARK 3 S TENSOR REMARK 3 S11: -0.0919 S12: -0.0307 S13: 0.4448 REMARK 3 S21: 0.2948 S22: 0.0722 S23: 0.1138 REMARK 3 S31: -0.4869 S32: -0.1888 S33: 0.0345 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3068 65.2217 25.8514 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.1334 REMARK 3 T33: 0.0651 T12: 0.0142 REMARK 3 T13: 0.0090 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 4.1050 L22: 6.0876 REMARK 3 L33: 5.6065 L12: -1.5345 REMARK 3 L13: 0.0470 L23: -1.6044 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: -0.2127 S13: 0.1309 REMARK 3 S21: 0.2561 S22: 0.0638 S23: 0.0839 REMARK 3 S31: -0.0501 S32: -0.0481 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9407 69.6065 23.0892 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.1291 REMARK 3 T33: 0.0858 T12: -0.0143 REMARK 3 T13: 0.0154 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 4.5869 L22: 6.4394 REMARK 3 L33: 4.7735 L12: -0.4977 REMARK 3 L13: 1.3957 L23: 0.7527 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: -0.2527 S13: 0.2075 REMARK 3 S21: 0.1251 S22: -0.0265 S23: 0.0307 REMARK 3 S31: -0.2608 S32: 0.2161 S33: 0.0168 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9752 78.4982 3.8879 REMARK 3 T TENSOR REMARK 3 T11: 0.2211 T22: 0.1279 REMARK 3 T33: 0.2371 T12: 0.0152 REMARK 3 T13: 0.0328 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.8893 L22: 0.2819 REMARK 3 L33: 1.5535 L12: 1.0118 REMARK 3 L13: -0.0476 L23: -0.2161 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: -0.1209 S13: 0.7316 REMARK 3 S21: 0.0146 S22: 0.0339 S23: -0.1107 REMARK 3 S31: -0.3638 S32: -0.1426 S33: -0.0886 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7105 62.7227 6.4108 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.0950 REMARK 3 T33: 0.0839 T12: 0.0086 REMARK 3 T13: 0.0013 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.8562 L22: 1.9548 REMARK 3 L33: 1.4229 L12: 0.4583 REMARK 3 L13: -0.2479 L23: 0.6171 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.0133 S13: 0.0070 REMARK 3 S21: -0.0777 S22: 0.0734 S23: -0.0267 REMARK 3 S31: -0.0356 S32: 0.0695 S33: -0.0702 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0261 40.8009 7.3159 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.0980 REMARK 3 T33: 0.0877 T12: 0.0087 REMARK 3 T13: -0.0177 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 6.0607 L22: 3.2689 REMARK 3 L33: 1.2698 L12: -1.8255 REMARK 3 L13: -1.1453 L23: 1.0624 REMARK 3 S TENSOR REMARK 3 S11: -0.0885 S12: -0.3041 S13: -0.2427 REMARK 3 S21: 0.2089 S22: 0.1971 S23: -0.0462 REMARK 3 S31: 0.3564 S32: 0.1516 S33: -0.1439 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000241001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 32.904 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.907 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.07 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 1EYE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYSMA.01019.B.B1.PW38386 WAS REMARK 280 CRYSTALLIZED AT 14 MG/ML AND 14 ??C WITH 2.5 MM 6- REMARK 280 HYDROXYMETHYLPTERIN-MONOPHOSPHATE AND MIXED 1:1 WITH A SOLUTION REMARK 280 OF 0.2 M AMMONIUM CITRATE DIBASIC PH 5.0 AND 20% (W/V) PEG3350, REMARK 280 20% ETHYLENE GLYCOL CRYO. TRAY: 308720F3, PUCK: BQX9-6., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.53500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.53500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.86000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.20500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.86000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.20500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.53500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.86000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.20500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 67.53500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.86000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.20500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 GLN A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 143 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 486 O HOH A 632 2.10 REMARK 500 O HOH A 476 O HOH A 535 2.19 REMARK 500 OD1 ASP A 29 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 723 DISTANCE = 7.42 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMM A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 312 DBREF1 6OMZ A 1 285 UNP A0A2U9PYL8_MYCSE DBREF2 6OMZ A A0A2U9PYL8 1 285 SEQADV 6OMZ MET A -7 UNP A0A2U9PYL INITIATING METHIONINE SEQADV 6OMZ ALA A -6 UNP A0A2U9PYL EXPRESSION TAG SEQADV 6OMZ HIS A -5 UNP A0A2U9PYL EXPRESSION TAG SEQADV 6OMZ HIS A -4 UNP A0A2U9PYL EXPRESSION TAG SEQADV 6OMZ HIS A -3 UNP A0A2U9PYL EXPRESSION TAG SEQADV 6OMZ HIS A -2 UNP A0A2U9PYL EXPRESSION TAG SEQADV 6OMZ HIS A -1 UNP A0A2U9PYL EXPRESSION TAG SEQADV 6OMZ HIS A 0 UNP A0A2U9PYL EXPRESSION TAG SEQADV 6OMZ GLU A 282 UNP A0A2U9PYL GLY 282 ENGINEERED MUTATION SEQRES 1 A 293 MET ALA HIS HIS HIS HIS HIS HIS MET ASN PRO PRO SER SEQRES 2 A 293 LEU THR ALA GLN PRO GLY THR PRO VAL GLN VAL MET GLY SEQRES 3 A 293 VAL VAL ASN VAL THR GLN ASP SER PHE SER ASP GLY GLY SEQRES 4 A 293 LYS PHE ILE ASP THR ASP ARG ALA VAL GLU HIS GLY LEU SEQRES 5 A 293 ALA LEU VAL ALA ALA GLY ALA GLN ILE ILE ASP VAL GLY SEQRES 6 A 293 GLY GLU SER THR ARG PRO GLY ALA THR ARG ILE ASP PRO SEQRES 7 A 293 GLY VAL GLU ALA ALA ARG VAL THR PRO VAL ILE ARG GLU SEQRES 8 A 293 LEU ALA ALA GLN GLY ILE THR ILE SER ILE ASP THR MET SEQRES 9 A 293 HIS ALA ASP VAL ALA ARG ALA ALA LEU GLU ALA GLY ALA SEQRES 10 A 293 HIS ILE VAL ASN ASP VAL SER GLY GLY ARG ALA ASP PRO SEQRES 11 A 293 GLY MET ALA GLY VAL LEU ALA GLU ALA LYS VAL PRO TRP SEQRES 12 A 293 ILE LEU MET HIS TRP ARG SER VAL ASP ALA ASP HIS PRO SEQRES 13 A 293 HIS ARG VAL PRO GLY TYR ARG ASP VAL VAL ALA GLU VAL SEQRES 14 A 293 ARG THR GLU LEU LEU ALA ALA VAL ASP ALA ALA VAL THR SEQRES 15 A 293 ALA GLY VAL GLU PRO GLU ARG LEU VAL ILE ASP PRO GLY SEQRES 16 A 293 LEU GLY PHE ALA LYS THR ALA GLU HIS ASN TRP ALA LEU SEQRES 17 A 293 LEU HIS ALA LEU PRO ASP LEU VAL ALA THR GLY VAL PRO SEQRES 18 A 293 VAL LEU VAL GLY ALA SER ARG LYS ARG PHE LEU GLY THR SEQRES 19 A 293 LEU LEU ALA ALA ALA ASP GLY THR PRO ARG PRO PRO ASP SEQRES 20 A 293 GLY ARG GLU THR ALA THR ALA VAL ILE SER VAL LEU ALA SEQRES 21 A 293 ALA MET HIS GLY ALA TRP GLY VAL ARG VAL HIS ASP VAL SEQRES 22 A 293 GLN ALA SER VAL ASP ALA LEU LYS VAL LEU GLY ALA TRP SEQRES 23 A 293 THR SER GLY GLU GLN ILE GLY HET CIT A 301 13 HET DMS A 302 4 HET PMM A 303 18 HET CIT A 304 13 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HETNAM CIT CITRIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM PMM PTERIN-6-YL-METHYL-MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CIT 2(C6 H8 O7) FORMUL 3 DMS C2 H6 O S FORMUL 4 PMM C7 H8 N5 O5 P FORMUL 6 EDO 8(C2 H6 O2) FORMUL 14 HOH *323(H2 O) HELIX 1 AA1 VAL A 22 SER A 28 1 7 HELIX 2 AA2 ASP A 35 ALA A 49 1 15 HELIX 3 AA3 ASP A 69 ALA A 86 1 18 HELIX 4 AA4 HIS A 97 ALA A 107 1 11 HELIX 5 AA5 GLY A 123 LYS A 132 1 10 HELIX 6 AA6 ASP A 156 ALA A 175 1 20 HELIX 7 AA7 GLU A 178 GLU A 180 5 3 HELIX 8 AA8 THR A 193 ALA A 203 1 11 HELIX 9 AA9 ALA A 203 ALA A 209 1 7 HELIX 10 AB1 LYS A 221 LEU A 228 1 8 HELIX 11 AB2 PRO A 237 GLY A 240 5 4 HELIX 12 AB3 ARG A 241 HIS A 255 1 15 HELIX 13 AB4 ASP A 264 SER A 280 1 17 SHEET 1 AA1 8 LEU A 182 ASP A 185 0 SHEET 2 AA1 8 TRP A 135 MET A 138 1 N LEU A 137 O VAL A 183 SHEET 3 AA1 8 ILE A 111 ASP A 114 1 N VAL A 112 O ILE A 136 SHEET 4 AA1 8 THR A 90 ASP A 94 1 N ILE A 93 O ASN A 113 SHEET 5 AA1 8 ILE A 53 GLY A 57 1 N VAL A 56 O SER A 92 SHEET 6 AA1 8 GLN A 15 ASN A 21 1 N VAL A 20 O ASP A 55 SHEET 7 AA1 8 GLY A 259 VAL A 262 1 O VAL A 260 N MET A 17 SHEET 8 AA1 8 LEU A 215 VAL A 216 1 N VAL A 216 O ARG A 261 SITE 1 AC1 12 THR A 61 ARG A 62 HIS A 149 ARG A 155 SITE 2 AC1 12 GLY A 189 PHE A 190 LYS A 221 ARG A 222 SITE 3 AC1 12 PMM A 303 HOH A 470 HOH A 526 HOH A 534 SITE 1 AC2 3 MET A 96 TRP A 140 SER A 142 SITE 1 AC3 19 ARG A 62 ASP A 94 ASN A 113 VAL A 115 SITE 2 AC3 19 MET A 138 ARG A 155 ASP A 185 PHE A 190 SITE 3 AC3 19 LEU A 215 GLY A 217 LYS A 221 ARG A 261 SITE 4 AC3 19 HIS A 263 CIT A 301 HOH A 424 HOH A 431 SITE 5 AC3 19 HOH A 433 HOH A 483 HOH A 486 SITE 1 AC4 10 THR A 163 THR A 193 ALA A 194 GLU A 195 SITE 2 AC4 10 ARG A 222 PHE A 223 THR A 226 HOH A 482 SITE 3 AC4 10 HOH A 581 HOH A 586 SITE 1 AC5 2 ALA A 48 LYS A 273 SITE 1 AC6 7 GLY A 117 GLY A 118 TRP A 135 ALA A 168 SITE 2 AC6 7 ALA A 171 HOH A 560 HOH A 564 SITE 1 AC7 3 GLY A 71 ASP A 99 HOH A 558 SITE 1 AC8 5 PRO A 63 HIS A 149 ASP A 156 VAL A 158 SITE 2 AC8 5 HOH A 411 SITE 1 AC9 5 PRO A 134 TRP A 258 HOH A 480 HOH A 590 SITE 2 AC9 5 HOH A 599 SITE 1 AD1 4 SER A 116 MET A 138 HIS A 139 TRP A 140 SITE 1 AD2 4 GLN A 52 ILE A 89 THR A 90 HOH A 492 SITE 1 AD3 4 ARG A 141 GLY A 153 PRO A 238 HOH A 407 CRYST1 47.720 96.410 135.070 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020956 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007404 0.00000