HEADER DNA BINDING PROTEIN 19-APR-19 6ON4 TITLE CRYSTAL STRUCTURE OF THE GNTR-TYPE SIALOREGULATOR NANR FROM TITLE 2 ESCHERICHIA COLI, IN COMPLEX WITH SIALIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REPRESSOR NANR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 VARIANT: K-12; SOURCE 5 GENE: NANR, YHCK, B3226, JW3195; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSCRIPTIONAL REPRESSOR, BACTERIAL SIALIC ACID CATABOLISM, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.R.HORNE,S.PANJIKAR,R.A.NORTH,R.C.J.DOBSON REVDAT 3 13-MAR-24 6ON4 1 HETSYN REVDAT 2 29-JUL-20 6ON4 1 COMPND REMARK HETNAM SITE REVDAT 2 2 1 ATOM REVDAT 1 08-JUL-20 6ON4 0 JRNL AUTH K.A.KALIVODA,S.M.STEENBERGEN,E.R.VIMR JRNL TITL CONTROL OF THE ESCHERICHIA COLI SIALOREGULON BY JRNL TITL 2 TRANSCRIPTIONAL REPRESSOR NANR. JRNL REF J. BACTERIOL. V. 195 4689 2013 JRNL REFN ESSN 1098-5530 JRNL PMID 23935044 JRNL DOI 10.1128/JB.00692-13 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 28482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9326 - 4.5156 0.99 2816 134 0.1430 0.1927 REMARK 3 2 4.5156 - 3.5847 0.99 2773 112 0.1590 0.1937 REMARK 3 3 3.5847 - 3.1317 1.00 2752 152 0.1975 0.2453 REMARK 3 4 3.1317 - 2.8454 1.00 2748 134 0.2101 0.2656 REMARK 3 5 2.8454 - 2.6415 1.00 2748 145 0.2022 0.2449 REMARK 3 6 2.6415 - 2.4858 1.00 2750 134 0.2142 0.2639 REMARK 3 7 2.4858 - 2.3613 1.00 2717 166 0.2006 0.2334 REMARK 3 8 2.3613 - 2.2585 0.99 2775 142 0.2201 0.2733 REMARK 3 9 2.2585 - 2.1716 0.96 2636 145 0.2445 0.2859 REMARK 3 10 2.1716 - 2.0966 0.88 2376 127 0.2869 0.3401 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8062 34.0594 1.3390 REMARK 3 T TENSOR REMARK 3 T11: 0.5636 T22: 0.4573 REMARK 3 T33: 0.5512 T12: 0.0966 REMARK 3 T13: 0.0711 T23: 0.1343 REMARK 3 L TENSOR REMARK 3 L11: 0.6647 L22: 0.7924 REMARK 3 L33: 0.6925 L12: 0.0217 REMARK 3 L13: 0.1467 L23: -0.0246 REMARK 3 S TENSOR REMARK 3 S11: 0.3270 S12: 0.0928 S13: 0.1638 REMARK 3 S21: -0.5642 S22: -0.3831 S23: -0.2427 REMARK 3 S31: 0.2478 S32: 0.3606 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9359 8.2409 27.6487 REMARK 3 T TENSOR REMARK 3 T11: 0.3393 T22: 0.3529 REMARK 3 T33: 0.3098 T12: -0.0242 REMARK 3 T13: -0.0325 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 2.7633 L22: 0.7261 REMARK 3 L33: 1.0653 L12: 0.7565 REMARK 3 L13: -0.3591 L23: -0.2734 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: -0.3867 S13: -0.0739 REMARK 3 S21: 0.0740 S22: -0.0143 S23: -0.0774 REMARK 3 S31: 0.1316 S32: -0.0841 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7113 21.4766 48.7497 REMARK 3 T TENSOR REMARK 3 T11: 0.7149 T22: 0.8747 REMARK 3 T33: 0.6599 T12: 0.0201 REMARK 3 T13: 0.0385 T23: -0.0556 REMARK 3 L TENSOR REMARK 3 L11: 0.0936 L22: 0.0198 REMARK 3 L33: 0.1139 L12: -0.0198 REMARK 3 L13: -0.1017 L23: 0.0027 REMARK 3 S TENSOR REMARK 3 S11: 0.0813 S12: 0.1099 S13: -0.3084 REMARK 3 S21: -0.0040 S22: -0.3430 S23: -0.9091 REMARK 3 S31: 0.3666 S32: 0.3287 S33: -0.0008 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7354 24.7004 46.2601 REMARK 3 T TENSOR REMARK 3 T11: 0.6897 T22: 1.1605 REMARK 3 T33: 0.5814 T12: 0.0912 REMARK 3 T13: -0.0053 T23: -0.2212 REMARK 3 L TENSOR REMARK 3 L11: 0.0657 L22: -0.0039 REMARK 3 L33: 0.0401 L12: -0.0113 REMARK 3 L13: -0.0165 L23: 0.0095 REMARK 3 S TENSOR REMARK 3 S11: 0.4427 S12: 0.2579 S13: -0.4771 REMARK 3 S21: 0.1970 S22: -0.2219 S23: -0.1002 REMARK 3 S31: -0.0799 S32: -0.8181 S33: -0.0012 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2522 29.6094 50.9738 REMARK 3 T TENSOR REMARK 3 T11: 0.7689 T22: 0.8152 REMARK 3 T33: 0.6606 T12: 0.0701 REMARK 3 T13: 0.0870 T23: -0.1539 REMARK 3 L TENSOR REMARK 3 L11: 0.1747 L22: 0.2752 REMARK 3 L33: 0.5102 L12: 0.1208 REMARK 3 L13: -0.1127 L23: 0.2439 REMARK 3 S TENSOR REMARK 3 S11: -0.0630 S12: -0.2862 S13: 0.1704 REMARK 3 S21: 0.5528 S22: -0.2110 S23: 0.0727 REMARK 3 S31: -0.5501 S32: -0.7134 S33: -0.0010 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9703 13.0183 19.8757 REMARK 3 T TENSOR REMARK 3 T11: 0.3262 T22: 0.3369 REMARK 3 T33: 0.4090 T12: -0.0044 REMARK 3 T13: -0.0074 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.3700 L22: 0.2284 REMARK 3 L33: 0.4694 L12: 0.2185 REMARK 3 L13: -0.1665 L23: -0.3068 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: 0.0952 S13: 0.1274 REMARK 3 S21: -0.0398 S22: -0.0813 S23: -0.0806 REMARK 3 S31: 0.1515 S32: 0.0694 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 143 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0030 8.8767 -3.8744 REMARK 3 T TENSOR REMARK 3 T11: 0.5731 T22: 0.5975 REMARK 3 T33: 0.4332 T12: 0.0230 REMARK 3 T13: -0.0128 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.0427 L22: 0.0597 REMARK 3 L33: 0.0459 L12: 0.0155 REMARK 3 L13: 0.0380 L23: -0.0139 REMARK 3 S TENSOR REMARK 3 S11: 0.1988 S12: 0.3072 S13: -0.1987 REMARK 3 S21: -0.5053 S22: -0.1460 S23: -0.0224 REMARK 3 S31: -0.0663 S32: -0.4040 S33: 0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0772 14.5570 -1.9477 REMARK 3 T TENSOR REMARK 3 T11: 0.5377 T22: 0.4257 REMARK 3 T33: 0.4120 T12: 0.0078 REMARK 3 T13: 0.0840 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.1084 L22: 0.3257 REMARK 3 L33: 0.0729 L12: 0.1487 REMARK 3 L13: -0.0847 L23: -0.0026 REMARK 3 S TENSOR REMARK 3 S11: 0.0993 S12: 0.4152 S13: 0.1607 REMARK 3 S21: -0.4337 S22: 0.0246 S23: -0.0733 REMARK 3 S31: -0.3980 S32: -0.4120 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 188 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7683 19.0232 12.7758 REMARK 3 T TENSOR REMARK 3 T11: 0.4022 T22: 0.4993 REMARK 3 T33: 0.4439 T12: -0.0025 REMARK 3 T13: 0.0194 T23: 0.0558 REMARK 3 L TENSOR REMARK 3 L11: 0.0766 L22: 0.0288 REMARK 3 L33: 0.0446 L12: 0.0234 REMARK 3 L13: 0.0584 L23: 0.0326 REMARK 3 S TENSOR REMARK 3 S11: 0.0517 S12: 0.7129 S13: -0.2413 REMARK 3 S21: -0.4665 S22: -0.0054 S23: -0.1984 REMARK 3 S31: 0.0222 S32: 0.3143 S33: -0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7006 6.8663 0.7495 REMARK 3 T TENSOR REMARK 3 T11: 0.5902 T22: 0.5921 REMARK 3 T33: 0.6829 T12: -0.0185 REMARK 3 T13: 0.1218 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.0699 L22: 0.0197 REMARK 3 L33: 0.1651 L12: 0.0430 REMARK 3 L13: -0.0148 L23: -0.0477 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: 0.1275 S13: -0.2505 REMARK 3 S21: -0.2825 S22: -0.2716 S23: -0.9289 REMARK 3 S31: -0.1043 S32: 0.4663 S33: -0.0006 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 231 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3345 -1.9300 7.2087 REMARK 3 T TENSOR REMARK 3 T11: 0.5260 T22: 0.4427 REMARK 3 T33: 0.5447 T12: 0.0087 REMARK 3 T13: 0.0142 T23: -0.1012 REMARK 3 L TENSOR REMARK 3 L11: 0.1026 L22: 0.0976 REMARK 3 L33: 0.1036 L12: -0.0996 REMARK 3 L13: -0.0558 L23: 0.0933 REMARK 3 S TENSOR REMARK 3 S11: 0.3858 S12: 0.6995 S13: -0.6398 REMARK 3 S21: 0.3852 S22: -0.0796 S23: -0.0923 REMARK 3 S31: 1.0627 S32: 0.4607 S33: 0.0031 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 31 THROUGH 244) REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 1886 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ON4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000241005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28505 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 43.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE TRIHYDRATE, 0.1 M REMARK 280 SODIUM HEPES, 25 % (W/V) PEG 3350, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.92300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LEU A 3 REMARK 465 MET A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 6 REMARK 465 PHE A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 GLN A 10 REMARK 465 THR A 11 REMARK 465 GLU A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 PRO A 16 REMARK 465 ALA A 17 REMARK 465 ILE A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 20 REMARK 465 ASN A 21 REMARK 465 LEU A 22 REMARK 465 ARG A 23 REMARK 465 SER A 24 REMARK 465 ARG A 25 REMARK 465 PRO A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 ARG A 29 REMARK 465 SER A 247 REMARK 465 VAL A 248 REMARK 465 SER A 249 REMARK 465 ALA A 250 REMARK 465 THR A 251 REMARK 465 TRP A 252 REMARK 465 HIS A 253 REMARK 465 ALA A 254 REMARK 465 PHE A 255 REMARK 465 GLY A 256 REMARK 465 GLN A 257 REMARK 465 THR A 258 REMARK 465 THR A 259 REMARK 465 ASN A 260 REMARK 465 LYS A 261 REMARK 465 LYS A 262 REMARK 465 LYS A 263 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LEU B 3 REMARK 465 MET B 4 REMARK 465 ASN B 5 REMARK 465 ALA B 6 REMARK 465 PHE B 7 REMARK 465 ASP B 8 REMARK 465 SER B 9 REMARK 465 GLN B 10 REMARK 465 THR B 11 REMARK 465 GLU B 12 REMARK 465 ASP B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 PRO B 16 REMARK 465 ALA B 17 REMARK 465 ILE B 18 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 ASN B 21 REMARK 465 LEU B 22 REMARK 465 ARG B 23 REMARK 465 SER B 24 REMARK 465 ARG B 25 REMARK 465 PRO B 26 REMARK 465 LEU B 27 REMARK 465 ALA B 28 REMARK 465 ARG B 29 REMARK 465 LYS B 30 REMARK 465 LEU B 245 REMARK 465 ASN B 246 REMARK 465 SER B 247 REMARK 465 VAL B 248 REMARK 465 SER B 249 REMARK 465 ALA B 250 REMARK 465 THR B 251 REMARK 465 TRP B 252 REMARK 465 HIS B 253 REMARK 465 ALA B 254 REMARK 465 PHE B 255 REMARK 465 GLY B 256 REMARK 465 GLN B 257 REMARK 465 THR B 258 REMARK 465 THR B 259 REMARK 465 ASN B 260 REMARK 465 LYS B 261 REMARK 465 LYS B 262 REMARK 465 LYS B 263 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO2 SLB A 301 ZN ZN A 302 1.56 REMARK 500 O HOH A 485 O HOH A 498 2.07 REMARK 500 N GLY A 50 OE1 GLU A 53 2.09 REMARK 500 NE ARG A 177 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 53 13.93 -69.34 REMARK 500 ASN B 89 46.04 33.06 REMARK 500 SER B 243 75.14 -66.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 172 OD1 REMARK 620 2 HIS A 176 NE2 93.9 REMARK 620 3 HIS A 222 NE2 86.7 97.0 REMARK 620 4 HIS A 244 NE2 154.6 109.4 80.6 REMARK 620 5 SLB A 301 O1B 92.8 84.2 178.7 99.4 REMARK 620 6 SLB A 301 O2 83.5 154.6 108.0 79.7 70.7 REMARK 620 N 1 2 3 4 5 DBREF 6ON4 A 1 263 UNP P0A8W0 NANR_ECOLI 1 263 DBREF 6ON4 B 1 263 UNP P0A8W0 NANR_ECOLI 1 263 SEQRES 1 A 263 MET GLY LEU MET ASN ALA PHE ASP SER GLN THR GLU ASP SEQRES 2 A 263 SER SER PRO ALA ILE GLY ARG ASN LEU ARG SER ARG PRO SEQRES 3 A 263 LEU ALA ARG LYS LYS LEU SER GLU MET VAL GLU GLU GLU SEQRES 4 A 263 LEU GLU GLN MET ILE ARG ARG ARG GLU PHE GLY GLU GLY SEQRES 5 A 263 GLU GLN LEU PRO SER GLU ARG GLU LEU MET ALA PHE PHE SEQRES 6 A 263 ASN VAL GLY ARG PRO SER VAL ARG GLU ALA LEU ALA ALA SEQRES 7 A 263 LEU LYS ARG LYS GLY LEU VAL GLN ILE ASN ASN GLY GLU SEQRES 8 A 263 ARG ALA ARG VAL SER ARG PRO SER ALA ASP THR ILE ILE SEQRES 9 A 263 GLY GLU LEU SER GLY MET ALA LYS ASP PHE LEU SER HIS SEQRES 10 A 263 PRO GLY GLY ILE ALA HIS PHE GLU GLN LEU ARG LEU PHE SEQRES 11 A 263 PHE GLU SER SER LEU VAL ARG TYR ALA ALA GLU HIS ALA SEQRES 12 A 263 THR ASP GLU GLN ILE ASP LEU LEU ALA LYS ALA LEU GLU SEQRES 13 A 263 ILE ASN SER GLN SER LEU ASP ASN ASN ALA ALA PHE ILE SEQRES 14 A 263 ARG SER ASP VAL ASP PHE HIS ARG VAL LEU ALA GLU ILE SEQRES 15 A 263 PRO GLY ASN PRO ILE PHE MET ALA ILE HIS VAL ALA LEU SEQRES 16 A 263 LEU ASP TRP LEU ILE ALA ALA ARG PRO THR VAL THR ASP SEQRES 17 A 263 GLN ALA LEU HIS GLU HIS ASN ASN VAL SER TYR GLN GLN SEQRES 18 A 263 HIS ILE ALA ILE VAL ASP ALA ILE ARG ARG HIS ASP PRO SEQRES 19 A 263 ASP GLU ALA ASP ARG ALA LEU GLN SER HIS LEU ASN SER SEQRES 20 A 263 VAL SER ALA THR TRP HIS ALA PHE GLY GLN THR THR ASN SEQRES 21 A 263 LYS LYS LYS SEQRES 1 B 263 MET GLY LEU MET ASN ALA PHE ASP SER GLN THR GLU ASP SEQRES 2 B 263 SER SER PRO ALA ILE GLY ARG ASN LEU ARG SER ARG PRO SEQRES 3 B 263 LEU ALA ARG LYS LYS LEU SER GLU MET VAL GLU GLU GLU SEQRES 4 B 263 LEU GLU GLN MET ILE ARG ARG ARG GLU PHE GLY GLU GLY SEQRES 5 B 263 GLU GLN LEU PRO SER GLU ARG GLU LEU MET ALA PHE PHE SEQRES 6 B 263 ASN VAL GLY ARG PRO SER VAL ARG GLU ALA LEU ALA ALA SEQRES 7 B 263 LEU LYS ARG LYS GLY LEU VAL GLN ILE ASN ASN GLY GLU SEQRES 8 B 263 ARG ALA ARG VAL SER ARG PRO SER ALA ASP THR ILE ILE SEQRES 9 B 263 GLY GLU LEU SER GLY MET ALA LYS ASP PHE LEU SER HIS SEQRES 10 B 263 PRO GLY GLY ILE ALA HIS PHE GLU GLN LEU ARG LEU PHE SEQRES 11 B 263 PHE GLU SER SER LEU VAL ARG TYR ALA ALA GLU HIS ALA SEQRES 12 B 263 THR ASP GLU GLN ILE ASP LEU LEU ALA LYS ALA LEU GLU SEQRES 13 B 263 ILE ASN SER GLN SER LEU ASP ASN ASN ALA ALA PHE ILE SEQRES 14 B 263 ARG SER ASP VAL ASP PHE HIS ARG VAL LEU ALA GLU ILE SEQRES 15 B 263 PRO GLY ASN PRO ILE PHE MET ALA ILE HIS VAL ALA LEU SEQRES 16 B 263 LEU ASP TRP LEU ILE ALA ALA ARG PRO THR VAL THR ASP SEQRES 17 B 263 GLN ALA LEU HIS GLU HIS ASN ASN VAL SER TYR GLN GLN SEQRES 18 B 263 HIS ILE ALA ILE VAL ASP ALA ILE ARG ARG HIS ASP PRO SEQRES 19 B 263 ASP GLU ALA ASP ARG ALA LEU GLN SER HIS LEU ASN SER SEQRES 20 B 263 VAL SER ALA THR TRP HIS ALA PHE GLY GLN THR THR ASN SEQRES 21 B 263 LYS LYS LYS HET SLB A 301 39 HET ZN A 302 1 HET P4K B 301 107 HETNAM SLB N-ACETYL-BETA-NEURAMINIC ACID HETNAM ZN ZINC ION HETNAM P4K POLYETHYLENE GLYCOL HETSYN SLB N-ACETYLNEURAMINIC ACID; SIALIC ACID; O-SIALIC ACID; 5- HETSYN 2 SLB N-ACETYL-BETA-D-NEURAMINIC ACID; BETA-SIALIC ACID HETSYN P4K 3,6,9,12,15,18,21,24,27,30,33,36,39,42- HETSYN 2 P4K TETRADECAOXATETRATETRACONTAN-1-OL FORMUL 3 SLB C11 H19 N O9 FORMUL 4 ZN ZN 2+ FORMUL 5 P4K C30 H62 O15 FORMUL 6 HOH *163(H2 O) HELIX 1 AA1 LYS A 31 ARG A 46 1 16 HELIX 2 AA2 SER A 57 ASN A 66 1 10 HELIX 3 AA3 GLY A 68 LYS A 82 1 15 HELIX 4 AA4 SER A 99 SER A 116 1 18 HELIX 5 AA5 GLY A 120 ALA A 143 1 24 HELIX 6 AA6 THR A 144 GLN A 160 1 17 HELIX 7 AA7 ASN A 164 ILE A 182 1 19 HELIX 8 AA8 ASN A 185 ARG A 203 1 19 HELIX 9 AA9 THR A 207 ARG A 231 1 25 HELIX 10 AB1 ASP A 233 ASN A 246 1 14 HELIX 11 AB2 LEU B 32 ARG B 46 1 15 HELIX 12 AB3 SER B 57 ASN B 66 1 10 HELIX 13 AB4 GLY B 68 GLY B 83 1 16 HELIX 14 AB5 SER B 99 LEU B 115 1 17 HELIX 15 AB6 HIS B 117 ALA B 143 1 27 HELIX 16 AB7 THR B 144 GLU B 156 1 13 HELIX 17 AB8 ASP B 163 ILE B 182 1 20 HELIX 18 AB9 ILE B 187 ARG B 203 1 17 HELIX 19 AC1 THR B 207 ARG B 231 1 25 HELIX 20 AC2 ASP B 233 SER B 243 1 11 SHEET 1 AA1 2 VAL A 85 GLN A 86 0 SHEET 2 AA1 2 ARG A 94 VAL A 95 -1 O ARG A 94 N GLN A 86 SHEET 1 AA2 2 VAL B 85 GLN B 86 0 SHEET 2 AA2 2 ARG B 94 VAL B 95 -1 O ARG B 94 N GLN B 86 LINK OD1 ASP A 172 ZN ZN A 302 1555 1555 2.31 LINK NE2 HIS A 176 ZN ZN A 302 1555 1555 2.11 LINK NE2 HIS A 222 ZN ZN A 302 1555 1555 2.22 LINK NE2 HIS A 244 ZN ZN A 302 1555 1555 2.25 LINK O1B SLB A 301 ZN ZN A 302 1555 1555 2.31 LINK O2 SLB A 301 ZN ZN A 302 1555 1555 2.35 CRYST1 39.771 87.846 73.869 90.00 103.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025144 0.000000 0.005804 0.00000 SCALE2 0.000000 0.011384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013893 0.00000