HEADER TRANSCRIPTION 22-APR-19 6ONO TITLE COMPLEX STRUCTURE OF WHIB1 AND REGION 4 OF SIGA IN C2221 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION REGULATOR WHIB1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 1-76; COMPND 5 SYNONYM: IRON-SULFUR CLUSTER PROTEIN WHIB1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA POLYMERASE SIGMA FACTOR SIGA; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: REGION 4 (UNP RESIDUES 417-528); COMPND 11 SYNONYM: SIGMA-A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 VARIANT: ATCC 25618 / H37RV; SOURCE 5 GENE: WHIB1, RV3219; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 10 ORGANISM_TAXID: 83332; SOURCE 11 VARIANT: ATCC 25618 / H37RV; SOURCE 12 GENE: SIGA, MYSA, RPOD, RPOV, RV2703, MTCY05A6.24; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IRON-SULFUR CLUSTER, TRANSCRIPTION REGULATION, REDOX-SENSING, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.WAN,S.R.LI,D.G.BELTRAN,A.SCHACHT,D.C.BECKER,L.M.ZHANG REVDAT 4 22-JAN-20 6ONO 1 JRNL REVDAT 3 18-DEC-19 6ONO 1 JRNL REVDAT 2 04-DEC-19 6ONO 1 REMARK REVDAT 1 27-NOV-19 6ONO 0 JRNL AUTH T.WAN,S.LI,D.G.BELTRAN,A.SCHACHT,L.ZHANG,D.F.BECKER,L.ZHANG JRNL TITL STRUCTURAL BASIS OF NON-CANONICAL TRANSCRIPTIONAL REGULATION JRNL TITL 2 BY THE SIGMA A-BOUND IRON-SULFUR PROTEIN WHIB1 IN M. JRNL TITL 3 TUBERCULOSIS. JRNL REF NUCLEIC ACIDS RES. V. 48 501 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 31807774 JRNL DOI 10.1093/NAR/GKZ1133 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.3 REMARK 3 NUMBER OF REFLECTIONS : 20218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8100 - 3.5500 1.00 3788 220 0.1665 0.2176 REMARK 3 2 3.5500 - 2.8200 1.00 3656 209 0.1909 0.2410 REMARK 3 3 2.8200 - 2.4600 1.00 3632 169 0.2135 0.2465 REMARK 3 4 2.4600 - 2.2300 0.94 3403 137 0.2145 0.2348 REMARK 3 5 2.2300 - 2.0700 0.68 2458 120 0.2214 0.2626 REMARK 3 6 2.0700 - 1.9500 0.40 1443 70 0.2659 0.3162 REMARK 3 7 1.9500 - 1.8500 0.24 866 47 0.2486 0.3011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.183 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2352 REMARK 3 ANGLE : 0.871 3194 REMARK 3 CHIRALITY : 0.053 359 REMARK 3 PLANARITY : 0.005 415 REMARK 3 DIHEDRAL : 21.873 910 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 73) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3069 39.5882 98.1847 REMARK 3 T TENSOR REMARK 3 T11: 0.3292 T22: 0.1544 REMARK 3 T33: 0.0691 T12: -0.0148 REMARK 3 T13: -0.0422 T23: 0.0529 REMARK 3 L TENSOR REMARK 3 L11: 5.1305 L22: 4.0665 REMARK 3 L33: 5.3309 L12: -2.2161 REMARK 3 L13: -0.3115 L23: -0.9146 REMARK 3 S TENSOR REMARK 3 S11: 0.2231 S12: -0.0247 S13: 0.2299 REMARK 3 S21: 0.2531 S22: -0.1179 S23: -0.1825 REMARK 3 S31: -0.3750 S32: -0.0394 S33: -0.0511 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 454 THROUGH 522) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5855 45.2569 82.4468 REMARK 3 T TENSOR REMARK 3 T11: 0.3568 T22: 0.2114 REMARK 3 T33: 0.1265 T12: 0.0453 REMARK 3 T13: 0.0950 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 4.1047 L22: 2.0406 REMARK 3 L33: 6.4013 L12: -1.3766 REMARK 3 L13: 4.2277 L23: -0.2835 REMARK 3 S TENSOR REMARK 3 S11: -0.0634 S12: -0.0804 S13: 0.1563 REMARK 3 S21: 0.1723 S22: -0.2265 S23: 0.0691 REMARK 3 S31: -0.0301 S32: -0.0800 S33: 0.1912 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 2 THROUGH 75) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4393 48.3884 62.0870 REMARK 3 T TENSOR REMARK 3 T11: 0.2191 T22: 0.2442 REMARK 3 T33: 0.1125 T12: -0.0192 REMARK 3 T13: 0.0746 T23: -0.1209 REMARK 3 L TENSOR REMARK 3 L11: 2.0158 L22: 3.1880 REMARK 3 L33: 5.5158 L12: -0.4112 REMARK 3 L13: -0.2831 L23: 0.4391 REMARK 3 S TENSOR REMARK 3 S11: -0.1302 S12: -0.0819 S13: -0.0262 REMARK 3 S21: 0.0956 S22: -0.1724 S23: 0.2329 REMARK 3 S31: 0.0604 S32: 0.0368 S33: 0.0911 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 454 THROUGH 523) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0023 38.0901 45.7471 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.2190 REMARK 3 T33: 0.0722 T12: -0.0773 REMARK 3 T13: 0.0552 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 2.3316 L22: 4.2668 REMARK 3 L33: 5.2836 L12: -1.5563 REMARK 3 L13: -1.7663 L23: 2.6079 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: 0.0136 S13: 0.0148 REMARK 3 S21: -0.2146 S22: 0.0197 S23: -0.0246 REMARK 3 S31: -0.2607 S32: 0.1183 S33: 0.0344 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'B' AND (RESID 454 THROUGH 510 OR REMARK 3 RESID 512 THROUGH 517 OR RESID 519 OR REMARK 3 RESID 521 THROUGH 522)) REMARK 3 SELECTION : (CHAIN 'D' AND (RESID 454 THROUGH 510 OR REMARK 3 RESID 512 THROUGH 517 OR RESID 519 OR REMARK 3 RESID 521 THROUGH 522)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 2 THROUGH 42 OR REMARK 3 RESID 44 THROUGH 47 OR RESID 49 THROUGH REMARK 3 56 OR RESID 58 THROUGH 62 OR RESID 64 REMARK 3 THROUGH 73 OR RESID 101)) REMARK 3 SELECTION : (CHAIN 'C' AND (RESID 2 THROUGH 42 OR REMARK 3 RESID 44 THROUGH 47 OR RESID 49 THROUGH REMARK 3 56 OR RESID 58 THROUGH 62 OR RESID 64 REMARK 3 THROUGH 73 OR RESID 101)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ONO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000241036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 22.10 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.4 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 0.89400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: LONG BROWNISH CUBOID SHAPE, TYPICAL SIZE IS 0.2 MM * 0.2 REMARK 200 MM * 0.4 MM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS, PH 5.5, 200 MM REMARK 280 MAGNESIUM CHLORIDE, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.35650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.35650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 18.72250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.04000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 18.72250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.04000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.35650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 18.72250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.04000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.35650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 18.72250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.04000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 606 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ARG A 74 REMARK 465 ASN A 75 REMARK 465 ALA A 76 REMARK 465 MSE B 409 REMARK 465 ALA B 410 REMARK 465 HIS B 411 REMARK 465 HIS B 412 REMARK 465 HIS B 413 REMARK 465 HIS B 414 REMARK 465 HIS B 415 REMARK 465 HIS B 416 REMARK 465 ALA B 417 REMARK 465 ARG B 418 REMARK 465 GLU B 419 REMARK 465 PRO B 420 REMARK 465 ILE B 421 REMARK 465 SER B 422 REMARK 465 LEU B 423 REMARK 465 ASP B 424 REMARK 465 GLN B 425 REMARK 465 THR B 426 REMARK 465 ILE B 427 REMARK 465 GLY B 428 REMARK 465 ASP B 429 REMARK 465 GLU B 430 REMARK 465 GLY B 431 REMARK 465 ASP B 432 REMARK 465 SER B 433 REMARK 465 GLN B 434 REMARK 465 LEU B 435 REMARK 465 GLY B 436 REMARK 465 ASP B 437 REMARK 465 PHE B 438 REMARK 465 ILE B 439 REMARK 465 GLU B 440 REMARK 465 ASP B 441 REMARK 465 SER B 442 REMARK 465 GLU B 443 REMARK 465 ALA B 444 REMARK 465 VAL B 445 REMARK 465 VAL B 446 REMARK 465 ALA B 447 REMARK 465 VAL B 448 REMARK 465 ASP B 449 REMARK 465 ALA B 450 REMARK 465 VAL B 451 REMARK 465 SER B 452 REMARK 465 PHE B 453 REMARK 465 LEU B 523 REMARK 465 ARG B 524 REMARK 465 ASP B 525 REMARK 465 TYR B 526 REMARK 465 LEU B 527 REMARK 465 ASP B 528 REMARK 465 MSE C 1 REMARK 465 ALA C 76 REMARK 465 MSE D 409 REMARK 465 ALA D 410 REMARK 465 HIS D 411 REMARK 465 HIS D 412 REMARK 465 HIS D 413 REMARK 465 HIS D 414 REMARK 465 HIS D 415 REMARK 465 HIS D 416 REMARK 465 ALA D 417 REMARK 465 ARG D 418 REMARK 465 GLU D 419 REMARK 465 PRO D 420 REMARK 465 ILE D 421 REMARK 465 SER D 422 REMARK 465 LEU D 423 REMARK 465 ASP D 424 REMARK 465 GLN D 425 REMARK 465 THR D 426 REMARK 465 ILE D 427 REMARK 465 GLY D 428 REMARK 465 ASP D 429 REMARK 465 GLU D 430 REMARK 465 GLY D 431 REMARK 465 ASP D 432 REMARK 465 SER D 433 REMARK 465 GLN D 434 REMARK 465 LEU D 435 REMARK 465 GLY D 436 REMARK 465 ASP D 437 REMARK 465 PHE D 438 REMARK 465 ILE D 439 REMARK 465 GLU D 440 REMARK 465 ASP D 441 REMARK 465 SER D 442 REMARK 465 GLU D 443 REMARK 465 ALA D 444 REMARK 465 VAL D 445 REMARK 465 VAL D 446 REMARK 465 ALA D 447 REMARK 465 VAL D 448 REMARK 465 ASP D 449 REMARK 465 ALA D 450 REMARK 465 VAL D 451 REMARK 465 SER D 452 REMARK 465 PHE D 453 REMARK 465 ARG D 524 REMARK 465 ASP D 525 REMARK 465 TYR D 526 REMARK 465 LEU D 527 REMARK 465 ASP D 528 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 23 19.75 59.19 REMARK 500 LYS A 72 77.71 -102.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 101 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 SF4 A 101 S2 107.5 REMARK 620 3 SF4 A 101 S3 113.2 104.9 REMARK 620 4 SF4 A 101 S4 121.4 103.6 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 101 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 37 SG REMARK 620 2 SF4 A 101 S1 106.2 REMARK 620 3 SF4 A 101 S3 120.8 103.5 REMARK 620 4 SF4 A 101 S4 116.0 104.3 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 101 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 40 SG REMARK 620 2 SF4 A 101 S1 118.4 REMARK 620 3 SF4 A 101 S2 113.8 104.7 REMARK 620 4 SF4 A 101 S3 110.7 102.7 105.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 101 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 SF4 A 101 S1 117.7 REMARK 620 3 SF4 A 101 S2 117.1 103.9 REMARK 620 4 SF4 A 101 S4 108.5 104.3 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 C 101 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 9 SG REMARK 620 2 SF4 C 101 S2 107.4 REMARK 620 3 SF4 C 101 S3 113.7 104.1 REMARK 620 4 SF4 C 101 S4 120.6 105.0 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 C 101 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 37 SG REMARK 620 2 SF4 C 101 S1 109.2 REMARK 620 3 SF4 C 101 S3 120.0 102.8 REMARK 620 4 SF4 C 101 S4 114.0 104.5 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 C 101 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 40 SG REMARK 620 2 SF4 C 101 S1 122.9 REMARK 620 3 SF4 C 101 S2 114.2 103.4 REMARK 620 4 SF4 C 101 S3 105.3 105.0 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 C 101 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 46 SG REMARK 620 2 SF4 C 101 S1 116.0 REMARK 620 3 SF4 C 101 S2 115.3 102.7 REMARK 620 4 SF4 C 101 S4 112.3 104.2 105.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ONU RELATED DB: PDB DBREF 6ONO A 1 76 UNP P9WF43 WHIB1_MYCTU 1 76 DBREF 6ONO B 417 528 UNP P9WGI1 SIGA_MYCTU 417 528 DBREF 6ONO C 1 76 UNP P9WF43 WHIB1_MYCTU 1 76 DBREF 6ONO D 417 528 UNP P9WGI1 SIGA_MYCTU 417 528 SEQADV 6ONO MSE B 409 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO ALA B 410 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS B 411 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS B 412 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS B 413 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS B 414 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS B 415 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS B 416 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO MSE D 409 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO ALA D 410 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS D 411 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS D 412 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS D 413 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS D 414 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS D 415 UNP P9WGI1 EXPRESSION TAG SEQADV 6ONO HIS D 416 UNP P9WGI1 EXPRESSION TAG SEQRES 1 A 76 MSE ASP TRP ARG HIS LYS ALA VAL CYS ARG ASP GLU ASP SEQRES 2 A 76 PRO GLU LEU PHE PHE PRO VAL GLY ASN SER GLY PRO ALA SEQRES 3 A 76 LEU ALA GLN ILE ALA ASP ALA LYS LEU VAL CYS ASN ARG SEQRES 4 A 76 CYS PRO VAL THR THR GLU CYS LEU SER TRP ALA LEU ASN SEQRES 5 A 76 THR GLY GLN ASP SER GLY VAL TRP GLY GLY MSE SER GLU SEQRES 6 A 76 ASP GLU ARG ARG ALA LEU LYS ARG ARG ASN ALA SEQRES 1 B 120 MSE ALA HIS HIS HIS HIS HIS HIS ALA ARG GLU PRO ILE SEQRES 2 B 120 SER LEU ASP GLN THR ILE GLY ASP GLU GLY ASP SER GLN SEQRES 3 B 120 LEU GLY ASP PHE ILE GLU ASP SER GLU ALA VAL VAL ALA SEQRES 4 B 120 VAL ASP ALA VAL SER PHE THR LEU LEU GLN ASP GLN LEU SEQRES 5 B 120 GLN SER VAL LEU ASP THR LEU SER GLU ARG GLU ALA GLY SEQRES 6 B 120 VAL VAL ARG LEU ARG PHE GLY LEU THR ASP GLY GLN PRO SEQRES 7 B 120 ARG THR LEU ASP GLU ILE GLY GLN VAL TYR GLY VAL THR SEQRES 8 B 120 ARG GLU ARG ILE ARG GLN ILE GLU SER LYS THR MSE SER SEQRES 9 B 120 LYS LEU ARG HIS PRO SER ARG SER GLN VAL LEU ARG ASP SEQRES 10 B 120 TYR LEU ASP SEQRES 1 C 76 MSE ASP TRP ARG HIS LYS ALA VAL CYS ARG ASP GLU ASP SEQRES 2 C 76 PRO GLU LEU PHE PHE PRO VAL GLY ASN SER GLY PRO ALA SEQRES 3 C 76 LEU ALA GLN ILE ALA ASP ALA LYS LEU VAL CYS ASN ARG SEQRES 4 C 76 CYS PRO VAL THR THR GLU CYS LEU SER TRP ALA LEU ASN SEQRES 5 C 76 THR GLY GLN ASP SER GLY VAL TRP GLY GLY MSE SER GLU SEQRES 6 C 76 ASP GLU ARG ARG ALA LEU LYS ARG ARG ASN ALA SEQRES 1 D 120 MSE ALA HIS HIS HIS HIS HIS HIS ALA ARG GLU PRO ILE SEQRES 2 D 120 SER LEU ASP GLN THR ILE GLY ASP GLU GLY ASP SER GLN SEQRES 3 D 120 LEU GLY ASP PHE ILE GLU ASP SER GLU ALA VAL VAL ALA SEQRES 4 D 120 VAL ASP ALA VAL SER PHE THR LEU LEU GLN ASP GLN LEU SEQRES 5 D 120 GLN SER VAL LEU ASP THR LEU SER GLU ARG GLU ALA GLY SEQRES 6 D 120 VAL VAL ARG LEU ARG PHE GLY LEU THR ASP GLY GLN PRO SEQRES 7 D 120 ARG THR LEU ASP GLU ILE GLY GLN VAL TYR GLY VAL THR SEQRES 8 D 120 ARG GLU ARG ILE ARG GLN ILE GLU SER LYS THR MSE SER SEQRES 9 D 120 LYS LEU ARG HIS PRO SER ARG SER GLN VAL LEU ARG ASP SEQRES 10 D 120 TYR LEU ASP MODRES 6ONO MSE A 63 MET MODIFIED RESIDUE MODRES 6ONO MSE B 511 MET MODIFIED RESIDUE MODRES 6ONO MSE C 63 MET MODIFIED RESIDUE MODRES 6ONO MSE D 511 MET MODIFIED RESIDUE HET MSE A 63 8 HET MSE B 511 13 HET MSE C 63 13 HET MSE D 511 8 HET SF4 A 101 8 HET PEG A 102 7 HET PEG A 103 7 HET SF4 C 101 8 HETNAM MSE SELENOMETHIONINE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 5 SF4 2(FE4 S4) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 9 HOH *235(H2 O) HELIX 1 AA1 ASP A 2 GLU A 12 5 11 HELIX 2 AA2 ASP A 13 PHE A 18 5 6 HELIX 3 AA3 ALA A 26 ARG A 39 1 14 HELIX 4 AA4 VAL A 42 GLY A 54 1 13 HELIX 5 AA5 SER A 64 LYS A 72 1 9 HELIX 6 AA6 LEU B 455 THR B 466 1 12 HELIX 7 AA7 SER B 468 GLY B 480 1 13 HELIX 8 AA8 THR B 488 GLY B 497 1 10 HELIX 9 AA9 THR B 499 HIS B 516 1 18 HELIX 10 AB1 PRO B 517 SER B 520 5 4 HELIX 11 AB2 ASP C 2 GLU C 12 5 11 HELIX 12 AB3 ASP C 13 PHE C 18 5 6 HELIX 13 AB4 GLY C 24 ASN C 38 1 15 HELIX 14 AB5 VAL C 42 GLY C 54 1 13 HELIX 15 AB6 SER C 64 ARG C 73 1 10 HELIX 16 AB7 LEU D 455 THR D 466 1 12 HELIX 17 AB8 SER D 468 GLY D 480 1 13 HELIX 18 AB9 THR D 488 GLY D 497 1 10 HELIX 19 AC1 THR D 499 HIS D 516 1 18 HELIX 20 AC2 PRO D 517 SER D 520 5 4 LINK SG CYS A 9 FE1 SF4 A 101 1555 1555 2.33 LINK SG CYS A 37 FE2 SF4 A 101 1555 1555 2.27 LINK SG CYS A 40 FE4 SF4 A 101 1555 1555 2.23 LINK SG CYS A 46 FE3 SF4 A 101 1555 1555 2.24 LINK C GLY A 62 N MSE A 63 1555 1555 1.34 LINK C MSE A 63 N SER A 64 1555 1555 1.33 LINK C THR B 510 N MSE B 511 1555 1555 1.35 LINK C MSE B 511 N SER B 512 1555 1555 1.35 LINK SG CYS C 9 FE1 SF4 C 101 1555 1555 2.28 LINK SG CYS C 37 FE2 SF4 C 101 1555 1555 2.28 LINK SG CYS C 40 FE4 SF4 C 101 1555 1555 2.28 LINK SG CYS C 46 FE3 SF4 C 101 1555 1555 2.29 LINK C GLY C 62 N MSE C 63 1555 1555 1.32 LINK C MSE C 63 N SER C 64 1555 1555 1.33 LINK C THR D 510 N MSE D 511 1555 1555 1.33 LINK C MSE D 511 N SER D 512 1555 1555 1.33 SITE 1 AC1 7 ALA A 7 CYS A 9 CYS A 37 CYS A 40 SITE 2 AC1 7 CYS A 46 GLY A 61 HIS B 516 SITE 1 AC2 3 GLU A 67 PEG A 103 HOH A 226 SITE 1 AC3 4 PEG A 102 HOH A 247 GLN D 457 LEU D 481 SITE 1 AC4 9 ALA C 7 CYS C 9 CYS C 37 CYS C 40 SITE 2 AC4 9 THR C 43 CYS C 46 GLY C 61 HIS D 516 SITE 3 AC4 9 PRO D 517 CRYST1 37.445 114.080 144.713 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006910 0.00000