HEADER PROTEIN BINDING/INHIBITOR 25-APR-19 6OPJ TITLE MENIN IN COMPLEX WITH PEPTIDE INHIBITOR 25 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MENIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEPTIDE INHIBITOR 25; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-PROTEIN INTERACTION INHIBITOR, PROTEIN BINDING-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.M.LINHARES,P.FORTUNA,T.CIERPICKI,J.GREMBECKA,L.BERLICKI REVDAT 4 15-NOV-23 6OPJ 1 LINK REVDAT 3 11-OCT-23 6OPJ 1 REMARK REVDAT 2 16-SEP-20 6OPJ 1 JRNL REVDAT 1 02-SEP-20 6OPJ 0 JRNL AUTH P.FORTUNA,B.M.LINHARES,T.PUROHIT,J.POLLOCK,T.CIERPICKI, JRNL AUTH 2 J.GREMBECKA,L.BERLICKI JRNL TITL COVALENT AND NONCOVALENT CONSTRAINTS YIELD A FIGURE JRNL TITL 2 EIGHT-LIKE CONFORMATION OF A PEPTIDE INHIBITING THE JRNL TITL 3 MENIN-MLL INTERACTION. JRNL REF EUR.J.MED.CHEM. V. 207 12748 2020 JRNL REFN ISSN 0223-5234 JRNL PMID 32882610 JRNL DOI 10.1016/J.EJMECH.2020.112748 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.D.ADAMS,P.V.AFONINE,G.BUNKOCZI,V.B.CHEN,I.W.DAVIS, REMARK 1 AUTH 2 N.ECHOLS,J.J.HEADD,L.W.HUNG,G.J.KAPRAL,R.W.GROSSE-KUNSTLEVE, REMARK 1 AUTH 3 A.J.MCCOY,N.W.MORIARTY,R.OEFFNER,R.J.READ,D.C.RICHARDSON, REMARK 1 AUTH 4 J.S.RICHARDSON,T.C.TERWILLIGER,P.H.ZWART REMARK 1 TITL PHENIX: A COMPREHENSIVE PYTHON-BASED SYSTEM FOR REMARK 1 TITL 2 MACROMOLECULAR STRUCTURE SOLUTION. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 66 213 2010 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 20124702 REMARK 1 DOI 10.1107/S0907444909052925 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.362 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 74120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.885 REMARK 3 FREE R VALUE TEST SET COUNT : 3621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.9797 - 4.4386 0.94 2789 136 0.1794 0.1846 REMARK 3 2 4.4386 - 3.5258 0.93 2633 124 0.1447 0.1990 REMARK 3 3 3.5258 - 3.0810 0.97 2731 138 0.1526 0.1433 REMARK 3 4 3.0810 - 2.7996 0.99 2734 149 0.1648 0.1969 REMARK 3 5 2.7996 - 2.5992 0.99 2741 142 0.1621 0.2140 REMARK 3 6 2.5992 - 2.4460 0.99 2721 148 0.1648 0.1657 REMARK 3 7 2.4460 - 2.3236 0.99 2720 152 0.1561 0.2281 REMARK 3 8 2.3236 - 2.2225 0.99 2754 134 0.1552 0.2082 REMARK 3 9 2.2225 - 2.1370 0.99 2656 151 0.1558 0.1791 REMARK 3 10 2.1370 - 2.0633 1.00 2738 142 0.1556 0.1945 REMARK 3 11 2.0633 - 1.9988 1.00 2690 149 0.1686 0.2012 REMARK 3 12 1.9988 - 1.9417 1.00 2751 168 0.1739 0.2012 REMARK 3 13 1.9417 - 1.8906 1.00 2737 140 0.1744 0.2075 REMARK 3 14 1.8906 - 1.8445 1.00 2679 130 0.1855 0.2210 REMARK 3 15 1.8445 - 1.8026 1.00 2743 141 0.1794 0.2424 REMARK 3 16 1.8026 - 1.7642 1.00 2702 139 0.1861 0.2300 REMARK 3 17 1.7642 - 1.7289 1.00 2745 120 0.1887 0.2048 REMARK 3 18 1.7289 - 1.6963 1.00 2703 134 0.1996 0.2093 REMARK 3 19 1.6963 - 1.6660 1.00 2718 133 0.1927 0.2194 REMARK 3 20 1.6660 - 1.6378 1.00 2712 119 0.1939 0.2345 REMARK 3 21 1.6378 - 1.6114 1.00 2746 150 0.2001 0.2644 REMARK 3 22 1.6114 - 1.5866 1.00 2679 144 0.2045 0.2075 REMARK 3 23 1.5866 - 1.5632 1.00 2736 135 0.2106 0.2399 REMARK 3 24 1.5632 - 1.5412 1.00 2672 144 0.2265 0.2371 REMARK 3 25 1.5412 - 1.5204 1.00 2747 132 0.2354 0.2598 REMARK 3 26 1.5204 - 1.5007 0.94 2522 127 0.2454 0.2878 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3891 REMARK 3 ANGLE : 0.910 5273 REMARK 3 CHIRALITY : 0.050 587 REMARK 3 PLANARITY : 0.004 666 REMARK 3 DIHEDRAL : 14.510 2308 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000241129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4X5Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M HEPES, PH REMARK 280 7.5, 25% W/V PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.93350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.85100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.07250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.85100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.93350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.07250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 538 REMARK 465 ALA A 539 REMARK 465 PRO A 540 REMARK 465 ALA A 541 REMARK 465 ALA A 542 REMARK 465 SER A 543 REMARK 465 PRO A 544 REMARK 465 PRO A 545 REMARK 465 PRO A 546 REMARK 465 GLU A 547 REMARK 465 GLY A 548 REMARK 465 LYS A 589 REMARK 465 GLN A 590 REMARK 465 LYS A 591 REMARK 465 VAL A 592 REMARK 465 SER A 593 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CD CE NZ REMARK 470 ARG A 21 NH2 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ARG A 98 NH2 REMARK 470 PRO A 107 CG CD REMARK 470 GLU A 109 CG CD OE1 OE2 REMARK 470 VAL A 112 CG1 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 137 CZ NH1 NH2 REMARK 470 ARG A 171 NE CZ NH1 NH2 REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 ARG A 206 NH1 NH2 REMARK 470 LEU A 249 CG CD1 CD2 REMARK 470 ARG A 275 NH2 REMARK 470 GLU A 290 OE1 REMARK 470 ARG A 332 CZ NH1 NH2 REMARK 470 ARG A 355 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 400 CD OE1 NE2 REMARK 470 GLU A 408 OE1 REMARK 470 THR A 429 CG2 REMARK 470 THR A 438 CG2 REMARK 470 GLU A 448 CD OE1 OE2 REMARK 470 GLN A 450 NE2 REMARK 470 VAL A 460 CG1 CG2 REMARK 470 LYS A 562 CD CE NZ REMARK 470 THR A 568 CG2 REMARK 470 LYS A 569 CG CD CE NZ REMARK 470 LYS A 576 CE NZ REMARK 470 SER A 583 OG REMARK 470 GLN A 586 CG CD OE1 NE2 REMARK 470 MET A 587 CG SD CE REMARK 470 LYS A 588 CG CD CE NZ REMARK 470 ARG B 13 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 217 O HOH A 701 2.15 REMARK 500 O GLU A 563 O HOH A 702 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ACE B 1 O - C - N ANGL. DEV. = -22.4 DEGREES REMARK 500 ABA B 5 CA - C - N ANGL. DEV. = 17.3 DEGREES REMARK 500 192 B 8 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 77 -61.74 -161.91 REMARK 500 SER A 178 -156.70 -94.81 REMARK 500 ASN A 189 16.01 57.89 REMARK 500 SER A 226 46.94 -90.43 REMARK 500 GLU A 290 89.74 -151.83 REMARK 500 GLU A 356 1.90 88.87 REMARK 500 ASP A 370 -57.03 -139.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP B 4 10.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1369 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1370 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1371 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1372 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A1373 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1374 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A1375 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1376 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A1377 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH A1378 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A1379 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A1380 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A1381 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A1382 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A1383 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH A1384 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A1385 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A1386 DISTANCE = 7.88 ANGSTROMS REMARK 525 HOH A1387 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH A1388 DISTANCE = 8.14 ANGSTROMS REMARK 525 HOH A1389 DISTANCE = 8.85 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 608 DBREF 6OPJ A -4 593 PDB 6OPJ 6OPJ -4 593 DBREF 6OPJ B 1 13 PDB 6OPJ 6OPJ 1 13 SEQRES 1 A 489 GLY GLY SER SER SER MET GLY LEU LYS ALA ALA GLN LYS SEQRES 2 A 489 THR LEU PHE PRO LEU ARG SER ILE ASP ASP VAL VAL ARG SEQRES 3 A 489 LEU PHE ALA ALA GLU LEU GLY ARG GLU GLU PRO ASP LEU SEQRES 4 A 489 VAL LEU LEU SER LEU VAL LEU GLY PHE VAL GLU HIS PHE SEQRES 5 A 489 LEU ALA VAL ASN ARG VAL GLY LEU THR TYR PHE PRO VAL SEQRES 6 A 489 ALA ASP LEU SER ILE ILE ALA ALA LEU TYR ALA ARG PHE SEQRES 7 A 489 THR ALA GLN ILE ARG GLY ALA VAL ASP LEU SER LEU TYR SEQRES 8 A 489 PRO ARG GLU GLY GLY VAL SER SER ARG GLU LEU VAL LYS SEQRES 9 A 489 LYS VAL SER ASP VAL ILE TRP ASN SER LEU SER ARG SER SEQRES 10 A 489 TYR PHE LYS ASP ARG ALA HIS ILE GLN SER LEU PHE SER SEQRES 11 A 489 PHE ILE THR GLY THR LYS LEU ASP SER SER GLY VAL ALA SEQRES 12 A 489 PHE ALA VAL VAL GLY ALA CYS GLN ALA LEU GLY LEU ARG SEQRES 13 A 489 ASP VAL HIS LEU ALA LEU SER GLU ASP HIS ALA TRP VAL SEQRES 14 A 489 VAL PHE GLY PRO ASN GLY GLU GLN THR ALA GLU VAL THR SEQRES 15 A 489 TRP HIS GLY LYS GLY ASN GLU ASP ARG ARG GLY GLN THR SEQRES 16 A 489 VAL ASN ALA GLY VAL ALA GLU ARG SER TRP LEU TYR LEU SEQRES 17 A 489 LYS GLY SER TYR MET ARG CYS ASP ARG LYS MET GLU VAL SEQRES 18 A 489 ALA PHE MET VAL CYS ALA ILE ASN PRO SER ILE ASP LEU SEQRES 19 A 489 HIS THR ASP SER LEU GLU LEU LEU GLN LEU GLN GLN LYS SEQRES 20 A 489 LEU LEU TRP LEU LEU TYR ASP LEU GLY HIS LEU GLU ARG SEQRES 21 A 489 TYR PRO MET ALA LEU GLY ASN LEU ALA ASP LEU GLU GLU SEQRES 22 A 489 LEU GLU PRO THR PRO GLY ARG PRO ASP PRO LEU THR LEU SEQRES 23 A 489 TYR HIS LYS GLY ILE ALA SER ALA LYS THR TYR TYR ARG SEQRES 24 A 489 ASP GLU HIS ILE TYR PRO TYR MET TYR LEU ALA GLY TYR SEQRES 25 A 489 HIS CYS ARG ASN ARG ASN VAL ARG GLU ALA LEU GLN ALA SEQRES 26 A 489 TRP ALA ASP THR ALA THR VAL ILE GLN ASP TYR ASN TYR SEQRES 27 A 489 CYS ARG GLU ASP GLU GLU ILE TYR LYS GLU PHE PHE GLU SEQRES 28 A 489 VAL ALA ASN ASP VAL ILE PRO ASN LEU LEU LYS GLU ALA SEQRES 29 A 489 ALA SER LEU LEU GLU ALA GLY SER GLN GLY SER ALA LEU SEQRES 30 A 489 GLN ASP PRO GLU CYS PHE ALA HIS LEU LEU ARG PHE TYR SEQRES 31 A 489 ASP GLY ILE CYS LYS TRP GLU GLU GLY SER PRO THR PRO SEQRES 32 A 489 VAL LEU HIS VAL GLY TRP ALA THR PHE LEU VAL GLN SER SEQRES 33 A 489 LEU GLY ARG PHE GLU GLY GLN VAL ARG GLN LYS VAL ARG SEQRES 34 A 489 ILE VAL SER VAL PRO ALA PRO ALA ALA SER PRO PRO PRO SEQRES 35 A 489 GLU GLY PRO VAL LEU THR PHE GLN SER GLU LYS MET LYS SEQRES 36 A 489 GLY MET LYS GLU LEU LEU VAL ALA THR LYS ILE ASN SER SEQRES 37 A 489 SER ALA ILE LYS LEU GLN LEU THR ALA GLN SER GLN VAL SEQRES 38 A 489 GLN MET LYS LYS GLN LYS VAL SER SEQRES 1 B 13 ACE ALA ARG TRP ABA N0A PRO 192 ABA PRO ORN ARG ARG HET ACE B 1 3 HET ABA B 5 6 HET N0A B 6 12 HET 192 B 8 7 HET ABA B 9 6 HET ORN B 11 8 HET DMS A 601 4 HET DMS A 602 4 HET DMS A 603 4 HET DMS A 604 4 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET PG4 A 608 13 HETNAM ACE ACETYL GROUP HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM N0A 3-FLUORO-L-PHENYLALANINE HETNAM 192 1-AMINOCYCLOBUTANECARBOXLIC ACID HETNAM ORN L-ORNITHINE HETNAM DMS DIMETHYL SULFOXIDE HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 ACE C2 H4 O FORMUL 2 ABA 2(C4 H9 N O2) FORMUL 2 N0A C9 H10 F N O2 FORMUL 2 192 C5 H9 N O2 FORMUL 2 ORN C5 H12 N2 O2 FORMUL 3 DMS 4(C2 H6 O S) FORMUL 7 SO4 3(O4 S 2-) FORMUL 10 PG4 C8 H18 O5 FORMUL 11 HOH *708(H2 O) HELIX 1 AA1 LYS A 4 THR A 9 1 6 HELIX 2 AA2 SER A 15 GLY A 28 1 14 HELIX 3 AA3 ASP A 33 VAL A 50 1 18 HELIX 4 AA4 ASP A 82 VAL A 101 1 20 HELIX 5 AA5 ASP A 102 TYR A 106 5 5 HELIX 6 AA6 SER A 114 LEU A 129 1 16 HELIX 7 AA7 SER A 142 THR A 150 1 9 HELIX 8 AA8 ASP A 153 LEU A 168 1 16 HELIX 9 AA9 GLY A 187 GLU A 191 5 5 HELIX 10 AB1 VAL A 211 GLU A 217 1 7 HELIX 11 AB2 SER A 219 SER A 226 5 8 HELIX 12 AB3 ASP A 231 ALA A 242 1 12 HELIX 13 AB4 SER A 253 LEU A 270 1 18 HELIX 14 AB5 TYR A 276 GLU A 290 1 15 HELIX 15 AB6 ASP A 297 TYR A 313 1 17 HELIX 16 AB7 ILE A 318 ASN A 331 1 14 HELIX 17 AB8 ASN A 333 GLN A 349 1 17 HELIX 18 AB9 ASP A 357 ASP A 370 1 14 HELIX 19 AC1 ASP A 370 ALA A 385 1 16 HELIX 20 AC2 SER A 402 GLN A 405 5 4 HELIX 21 AC3 ASP A 406 GLU A 425 1 20 HELIX 22 AC4 HIS A 433 ARG A 446 1 14 HELIX 23 AC5 GLU A 448 GLN A 453 1 6 HELIX 24 AC6 SER A 555 LYS A 562 1 8 HELIX 25 AC7 GLU A 563 ALA A 567 5 5 HELIX 26 AC8 ASN A 571 ALA A 581 1 11 SHEET 1 AA1 4 GLN A 192 ALA A 194 0 SHEET 2 AA1 4 ALA A 182 PHE A 186 -1 N VAL A 184 O ALA A 194 SHEET 3 AA1 4 HIS A 174 LEU A 177 -1 N ALA A 176 O TRP A 183 SHEET 4 AA1 4 MET A 228 ARG A 229 -1 O MET A 228 N LEU A 177 SHEET 1 AA2 2 ARG A 456 ILE A 457 0 SHEET 2 AA2 2 VAL A 550 LEU A 551 1 O LEU A 551 N ARG A 456 LINK C ACE B 1 N ALA B 2 1555 1555 1.35 LINK C TRP B 4 N ABA B 5 1555 1555 1.43 LINK C ABA B 5 N N0A B 6 1555 1555 1.43 LINK CG ABA B 5 CG ABA B 9 1555 1555 1.33 LINK C N0A B 6 N PRO B 7 1555 1555 1.34 LINK C PRO B 7 N 192 B 8 1555 1555 1.32 LINK C 192 B 8 N ABA B 9 1555 1555 1.43 LINK C ABA B 9 N PRO B 10 1555 1555 1.43 LINK C PRO B 10 N ORN B 11 1555 1555 1.33 LINK C ORN B 11 N ARG B 12 1555 1555 1.33 CISPEP 1 GLY A 2 LEU A 3 0 -2.12 CISPEP 2 PHE A 11 PRO A 12 0 1.31 SITE 1 AC1 6 PHE A 43 PHE A 47 GLY A 386 GLN A 400 SITE 2 AC1 6 HOH A 817 HOH A 829 SITE 1 AC2 5 ARG A 332 VAL A 334 ARG A 335 ALA A 403 SITE 2 AC2 5 HOH A 828 SITE 1 AC3 6 VAL A 185 GLY A 190 GLU A 191 TYR A 227 SITE 2 AC3 6 ARG A 229 SER A 583 SITE 1 AC4 3 TYR A 77 HOH A 782 HOH A 884 SITE 1 AC5 3 TYR A 133 PHE A 134 ARG A 137 SITE 1 AC6 5 PRO A 12 ARG A 14 HOH A 751 HOH A 799 SITE 2 AC6 5 HOH A 832 SITE 1 AC7 3 ARG A 446 HOH A 918 HOH A1024 SITE 1 AC8 10 LEU A 75 THR A 76 TYR A 361 LYS A 362 SITE 2 AC8 10 PHE A 365 HIS A 433 HOH A 752 HOH A 760 SITE 3 AC8 10 HOH A 991 HOH A1159 CRYST1 47.867 78.145 123.702 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020891 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008084 0.00000