data_6OQ2 # _entry.id 6OQ2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6OQ2 WWPDB D_1000241089 BMRB 30602 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type BMRB 'NMR Structure of Branched K11/K48-Linked Tri-Ubiquitin' 30602 unspecified PDB 'Crystal structure of branched K11/K48-linked tri-ubiquitin' 6OQ1 unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6OQ2 _pdbx_database_status.recvd_initial_deposition_date 2019-04-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Boughton, A.J.' 1 0000-0002-2628-8554 'Fushman, D.' 2 0000-0002-6634-8056 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 28 _citation.language ? _citation.page_first 29 _citation.page_last 43.e6 _citation.title ;Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2019.10.008 _citation.pdbx_database_id_PubMed 31677892 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boughton, A.J.' 1 ? primary 'Krueger, S.' 2 ? primary 'Fushman, D.' 3 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6OQ2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6OQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Ubiquitin 8660.873 1 ? 'K11R, K48R, K63R' ? ? 2 polymer man Ubiquitin 8604.845 1 ? K48R ? ? 3 polymer man Ubiquitin 8691.918 1 ? M77D ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MQIFVKTLTGRTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLHLVLRLRGG MQIFVKTLTGRTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLHLVLRLRGG B ? 2 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQKESTLHLVLRLRGG D ? 3 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGD MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGD E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ILE n 1 4 PHE n 1 5 VAL n 1 6 LYS n 1 7 THR n 1 8 LEU n 1 9 THR n 1 10 GLY n 1 11 ARG n 1 12 THR n 1 13 ILE n 1 14 THR n 1 15 LEU n 1 16 GLU n 1 17 VAL n 1 18 GLU n 1 19 PRO n 1 20 SER n 1 21 ASP n 1 22 THR n 1 23 ILE n 1 24 GLU n 1 25 ASN n 1 26 VAL n 1 27 LYS n 1 28 ALA n 1 29 LYS n 1 30 ILE n 1 31 GLN n 1 32 ASP n 1 33 LYS n 1 34 GLU n 1 35 GLY n 1 36 ILE n 1 37 PRO n 1 38 PRO n 1 39 ASP n 1 40 GLN n 1 41 GLN n 1 42 ARG n 1 43 LEU n 1 44 ILE n 1 45 PHE n 1 46 ALA n 1 47 GLY n 1 48 ARG n 1 49 GLN n 1 50 LEU n 1 51 GLU n 1 52 ASP n 1 53 GLY n 1 54 ARG n 1 55 THR n 1 56 LEU n 1 57 SER n 1 58 ASP n 1 59 TYR n 1 60 ASN n 1 61 ILE n 1 62 GLN n 1 63 ARG n 1 64 GLU n 1 65 SER n 1 66 THR n 1 67 LEU n 1 68 HIS n 1 69 LEU n 1 70 VAL n 1 71 LEU n 1 72 ARG n 1 73 LEU n 1 74 ARG n 1 75 GLY n 1 76 GLY n 2 1 MET n 2 2 GLN n 2 3 ILE n 2 4 PHE n 2 5 VAL n 2 6 LYS n 2 7 THR n 2 8 LEU n 2 9 THR n 2 10 GLY n 2 11 LYS n 2 12 THR n 2 13 ILE n 2 14 THR n 2 15 LEU n 2 16 GLU n 2 17 VAL n 2 18 GLU n 2 19 PRO n 2 20 SER n 2 21 ASP n 2 22 THR n 2 23 ILE n 2 24 GLU n 2 25 ASN n 2 26 VAL n 2 27 LYS n 2 28 ALA n 2 29 LYS n 2 30 ILE n 2 31 GLN n 2 32 ASP n 2 33 LYS n 2 34 GLU n 2 35 GLY n 2 36 ILE n 2 37 PRO n 2 38 PRO n 2 39 ASP n 2 40 GLN n 2 41 GLN n 2 42 ARG n 2 43 LEU n 2 44 ILE n 2 45 PHE n 2 46 ALA n 2 47 GLY n 2 48 ARG n 2 49 GLN n 2 50 LEU n 2 51 GLU n 2 52 ASP n 2 53 GLY n 2 54 ARG n 2 55 THR n 2 56 LEU n 2 57 SER n 2 58 ASP n 2 59 TYR n 2 60 ASN n 2 61 ILE n 2 62 GLN n 2 63 LYS n 2 64 GLU n 2 65 SER n 2 66 THR n 2 67 LEU n 2 68 HIS n 2 69 LEU n 2 70 VAL n 2 71 LEU n 2 72 ARG n 2 73 LEU n 2 74 ARG n 2 75 GLY n 2 76 GLY n 3 1 MET n 3 2 GLN n 3 3 ILE n 3 4 PHE n 3 5 VAL n 3 6 LYS n 3 7 THR n 3 8 LEU n 3 9 THR n 3 10 GLY n 3 11 LYS n 3 12 THR n 3 13 ILE n 3 14 THR n 3 15 LEU n 3 16 GLU n 3 17 VAL n 3 18 GLU n 3 19 PRO n 3 20 SER n 3 21 ASP n 3 22 THR n 3 23 ILE n 3 24 GLU n 3 25 ASN n 3 26 VAL n 3 27 LYS n 3 28 ALA n 3 29 LYS n 3 30 ILE n 3 31 GLN n 3 32 ASP n 3 33 LYS n 3 34 GLU n 3 35 GLY n 3 36 ILE n 3 37 PRO n 3 38 PRO n 3 39 ASP n 3 40 GLN n 3 41 GLN n 3 42 ARG n 3 43 LEU n 3 44 ILE n 3 45 PHE n 3 46 ALA n 3 47 GLY n 3 48 LYS n 3 49 GLN n 3 50 LEU n 3 51 GLU n 3 52 ASP n 3 53 GLY n 3 54 ARG n 3 55 THR n 3 56 LEU n 3 57 SER n 3 58 ASP n 3 59 TYR n 3 60 ASN n 3 61 ILE n 3 62 GLN n 3 63 LYS n 3 64 GLU n 3 65 SER n 3 66 THR n 3 67 LEU n 3 68 HIS n 3 69 LEU n 3 70 VAL n 3 71 LEU n 3 72 ARG n 3 73 LEU n 3 74 ARG n 3 75 GLY n 3 76 GLY n 3 77 ASP n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 76 Human ? UBB ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 76 Human ? UBB ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 77 Human ? UBB ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP UBB_HUMAN P0CG47 ? 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 2 UNP UBB_HUMAN P0CG47 ? 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 3 UNP UBB_HUMAN P0CG47 ? 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6OQ2 B 1 ? 76 ? P0CG47 1 ? 76 ? 1 76 2 2 6OQ2 D 1 ? 76 ? P0CG47 1 ? 76 ? 1 76 3 3 6OQ2 E 1 ? 77 ? P0CG47 1 ? 77 ? 1 77 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6OQ2 ARG B 11 ? UNP P0CG47 LYS 11 'engineered mutation' 11 1 1 6OQ2 ARG B 48 ? UNP P0CG47 LYS 48 'engineered mutation' 48 2 1 6OQ2 ARG B 63 ? UNP P0CG47 LYS 63 'engineered mutation' 63 3 2 6OQ2 ARG D 48 ? UNP P0CG47 LYS 48 'engineered mutation' 48 4 3 6OQ2 ASP E 77 ? UNP P0CG47 MET 77 'engineered mutation' 77 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 2 isotropic 2 1 2 '2D 1H-15N HSQC' 1 isotropic 3 1 3 '2D 1H-15N HSQC' 2 isotropic 4 1 4 '2D 1H-15N HSQC' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details 'Buffer: 20 mM sodium phosphate, pH 6.8.' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units M _pdbx_nmr_exptl_sample_conditions.label sample_conditions _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '120 uM [U-15N-distal11] Branched K11/K48-Linked Tri-Ubiquitin, 95% H2O/5% D2O' '95% H2O/5% D2O' 15N_distal11 solution ;The distal K11-linked Ub was uniformly 15N-enriched, while the distal K48-linked Ub and the proximal Ub were not isotopically enriched. ; 2 '100 uM [U-15N-distal48] Branched K11/K48-Linked Tri-Ubiquitin, 95% H2O/5% D2O' '95% H2O/5% D2O' 15N_distal48 solution ;The distal K48-linked Ub was uniformly 15N-enriched, while the distal K11-linked Ub and the proximal Ub were not isotopically enriched. ; 3 '60 uM [U-15N-distal11] Branched K11/K48-Linked Tri-Ubiquitin, 95% H2O/5% D2O' '95% H2O/5% D2O' 15N_distal11_MTSL48 solution ;The distal K11-linked Ub was uniformly 15N-enriched, while the distal K48-linked Ub and the proximal Ub were not isotopically enriched. MTSL was attached to residue C48 in the distal K48-linked Ub. ; 4 '110 uM [U-15N-distal48] Branched K11/K48-Linked Tri-Ubiquitin, 95% H2O/5% D2O' '95% H2O/5% D2O' 15N_distal48_MTSL11 solution ;The distal K48-linked Ub was uniformly 15N-enriched, while the distal K11-linked Ub and the proximal Ub were not isotopically enriched. MTSL was attached to residue C48 in the distal K11-linked Ub. ; # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 800 ? 2 'AVANCE III' ? Bruker 600 ? # _pdbx_nmr_refine.entry_id 6OQ2 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;THE INITIAL HADDOCK INPUT WAS THE CRYSTAL STRUCTURE OF BRANCHED K11/K48-LINKED TRI-UBIQUITIN (PDB ID 6OQ1). AMBIGUOUS DISTANCE RESTRAINTS WERE FROM CHEMICAL SHIFT PERTURBATIONS AND DISTANCE RESTRAINTS WERE BASED ON PRES. ; _pdbx_nmr_refine.software_ordinal 3 # _pdbx_nmr_ensemble.entry_id 6OQ2 _pdbx_nmr_ensemble.conformers_calculated_total_number 400 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6OQ2 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing TopSpin ? 'Bruker Biospin' 2 'peak picking' Sparky ? Goddard 3 refinement HADDOCK ? Bonvin 4 'structure calculation' HADDOCK ? Bonvin # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6OQ2 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6OQ2 _struct.title 'NMR Structure of Branched K11/K48-Linked Tri-Ubiquitin' _struct.pdbx_descriptor Ubiquitin _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6OQ2 _struct_keywords.text 'SIGNALING PROTEIN' _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 22 ? GLU A 34 ? THR B 22 GLU B 34 1 ? 13 HELX_P HELX_P2 AA2 PRO A 37 ? ASP A 39 ? PRO B 37 ASP B 39 5 ? 3 HELX_P HELX_P3 AA3 THR B 22 ? GLU B 34 ? THR D 22 GLU D 34 1 ? 13 HELX_P HELX_P4 AA4 LEU B 56 ? ASN B 60 ? LEU D 56 ASN D 60 5 ? 5 HELX_P HELX_P5 AA5 THR C 22 ? GLU C 34 ? THR E 22 GLU E 34 1 ? 13 HELX_P HELX_P6 AA6 PRO C 37 ? ASP C 39 ? PRO E 37 ASP E 39 5 ? 3 HELX_P HELX_P7 AA7 THR C 55 ? ASN C 60 ? THR E 55 ASN E 60 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 12 ? GLU A 16 ? THR B 12 GLU B 16 AA1 2 GLN A 2 ? LYS A 6 ? GLN B 2 LYS B 6 AA1 3 THR A 66 ? LEU A 71 ? THR B 66 LEU B 71 AA1 4 GLN A 41 ? PHE A 45 ? GLN B 41 PHE B 45 AA1 5 ARG A 48 ? GLN A 49 ? ARG B 48 GLN B 49 AA2 1 THR B 12 ? GLU B 16 ? THR D 12 GLU D 16 AA2 2 GLN B 2 ? LYS B 6 ? GLN D 2 LYS D 6 AA2 3 THR B 66 ? LEU B 71 ? THR D 66 LEU D 71 AA2 4 GLN B 41 ? PHE B 45 ? GLN D 41 PHE D 45 AA2 5 ARG B 48 ? GLN B 49 ? ARG D 48 GLN D 49 AA3 1 THR C 12 ? GLU C 16 ? THR E 12 GLU E 16 AA3 2 GLN C 2 ? THR C 7 ? GLN E 2 THR E 7 AA3 3 THR C 66 ? LEU C 71 ? THR E 66 LEU E 71 AA3 4 GLN C 41 ? PHE C 45 ? GLN E 41 PHE E 45 AA3 5 LYS C 48 ? GLN C 49 ? LYS E 48 GLN E 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 13 ? O ILE B 13 N VAL A 5 ? N VAL B 5 AA1 2 3 N LYS A 6 ? N LYS B 6 O LEU A 67 ? O LEU B 67 AA1 3 4 O VAL A 70 ? O VAL B 70 N ARG A 42 ? N ARG B 42 AA1 4 5 N PHE A 45 ? N PHE B 45 O ARG A 48 ? O ARG B 48 AA2 1 2 O ILE B 13 ? O ILE D 13 N VAL B 5 ? N VAL D 5 AA2 2 3 N PHE B 4 ? N PHE D 4 O LEU B 67 ? O LEU D 67 AA2 3 4 O VAL B 70 ? O VAL D 70 N ARG B 42 ? N ARG D 42 AA2 4 5 N PHE B 45 ? N PHE D 45 O ARG B 48 ? O ARG D 48 AA3 1 2 O LEU C 15 ? O LEU E 15 N ILE C 3 ? N ILE E 3 AA3 2 3 N LYS C 6 ? N LYS E 6 O LEU C 67 ? O LEU E 67 AA3 3 4 O HIS C 68 ? O HIS E 68 N ILE C 44 ? N ILE E 44 AA3 4 5 N PHE C 45 ? N PHE E 45 O LYS C 48 ? O LYS E 48 # _database_PDB_matrix.entry_id 6OQ2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 6OQ2 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET B . n A 1 2 GLN 2 2 2 GLN GLN B . n A 1 3 ILE 3 3 3 ILE ILE B . n A 1 4 PHE 4 4 4 PHE PHE B . n A 1 5 VAL 5 5 5 VAL VAL B . n A 1 6 LYS 6 6 6 LYS LYS B . n A 1 7 THR 7 7 7 THR THR B . n A 1 8 LEU 8 8 8 LEU LEU B . n A 1 9 THR 9 9 9 THR THR B . n A 1 10 GLY 10 10 10 GLY GLY B . n A 1 11 ARG 11 11 11 ARG ARG B . n A 1 12 THR 12 12 12 THR THR B . n A 1 13 ILE 13 13 13 ILE ILE B . n A 1 14 THR 14 14 14 THR THR B . n A 1 15 LEU 15 15 15 LEU LEU B . n A 1 16 GLU 16 16 16 GLU GLU B . n A 1 17 VAL 17 17 17 VAL VAL B . n A 1 18 GLU 18 18 18 GLU GLU B . n A 1 19 PRO 19 19 19 PRO PRO B . n A 1 20 SER 20 20 20 SER SER B . n A 1 21 ASP 21 21 21 ASP ASP B . n A 1 22 THR 22 22 22 THR THR B . n A 1 23 ILE 23 23 23 ILE ILE B . n A 1 24 GLU 24 24 24 GLU GLU B . n A 1 25 ASN 25 25 25 ASN ASN B . n A 1 26 VAL 26 26 26 VAL VAL B . n A 1 27 LYS 27 27 27 LYS LYS B . n A 1 28 ALA 28 28 28 ALA ALA B . n A 1 29 LYS 29 29 29 LYS LYS B . n A 1 30 ILE 30 30 30 ILE ILE B . n A 1 31 GLN 31 31 31 GLN GLN B . n A 1 32 ASP 32 32 32 ASP ASP B . n A 1 33 LYS 33 33 33 LYS LYS B . n A 1 34 GLU 34 34 34 GLU GLU B . n A 1 35 GLY 35 35 35 GLY GLY B . n A 1 36 ILE 36 36 36 ILE ILE B . n A 1 37 PRO 37 37 37 PRO PRO B . n A 1 38 PRO 38 38 38 PRO PRO B . n A 1 39 ASP 39 39 39 ASP ASP B . n A 1 40 GLN 40 40 40 GLN GLN B . n A 1 41 GLN 41 41 41 GLN GLN B . n A 1 42 ARG 42 42 42 ARG ARG B . n A 1 43 LEU 43 43 43 LEU LEU B . n A 1 44 ILE 44 44 44 ILE ILE B . n A 1 45 PHE 45 45 45 PHE PHE B . n A 1 46 ALA 46 46 46 ALA ALA B . n A 1 47 GLY 47 47 47 GLY GLY B . n A 1 48 ARG 48 48 48 ARG ARG B . n A 1 49 GLN 49 49 49 GLN GLN B . n A 1 50 LEU 50 50 50 LEU LEU B . n A 1 51 GLU 51 51 51 GLU GLU B . n A 1 52 ASP 52 52 52 ASP ASP B . n A 1 53 GLY 53 53 53 GLY GLY B . n A 1 54 ARG 54 54 54 ARG ARG B . n A 1 55 THR 55 55 55 THR THR B . n A 1 56 LEU 56 56 56 LEU LEU B . n A 1 57 SER 57 57 57 SER SER B . n A 1 58 ASP 58 58 58 ASP ASP B . n A 1 59 TYR 59 59 59 TYR TYR B . n A 1 60 ASN 60 60 60 ASN ASN B . n A 1 61 ILE 61 61 61 ILE ILE B . n A 1 62 GLN 62 62 62 GLN GLN B . n A 1 63 ARG 63 63 63 ARG ARG B . n A 1 64 GLU 64 64 64 GLU GLU B . n A 1 65 SER 65 65 65 SER SER B . n A 1 66 THR 66 66 66 THR THR B . n A 1 67 LEU 67 67 67 LEU LEU B . n A 1 68 HIS 68 68 68 HIS HIS B . n A 1 69 LEU 69 69 69 LEU LEU B . n A 1 70 VAL 70 70 70 VAL VAL B . n A 1 71 LEU 71 71 71 LEU LEU B . n A 1 72 ARG 72 72 72 ARG ARG B . n A 1 73 LEU 73 73 73 LEU LEU B . n A 1 74 ARG 74 74 74 ARG ARG B . n A 1 75 GLY 75 75 75 GLY GLY B . n A 1 76 GLY 76 76 76 GLY GLY B . n B 2 1 MET 1 1 1 MET MET D . n B 2 2 GLN 2 2 2 GLN GLN D . n B 2 3 ILE 3 3 3 ILE ILE D . n B 2 4 PHE 4 4 4 PHE PHE D . n B 2 5 VAL 5 5 5 VAL VAL D . n B 2 6 LYS 6 6 6 LYS LYS D . n B 2 7 THR 7 7 7 THR THR D . n B 2 8 LEU 8 8 8 LEU LEU D . n B 2 9 THR 9 9 9 THR THR D . n B 2 10 GLY 10 10 10 GLY GLY D . n B 2 11 LYS 11 11 11 LYS LYS D . n B 2 12 THR 12 12 12 THR THR D . n B 2 13 ILE 13 13 13 ILE ILE D . n B 2 14 THR 14 14 14 THR THR D . n B 2 15 LEU 15 15 15 LEU LEU D . n B 2 16 GLU 16 16 16 GLU GLU D . n B 2 17 VAL 17 17 17 VAL VAL D . n B 2 18 GLU 18 18 18 GLU GLU D . n B 2 19 PRO 19 19 19 PRO PRO D . n B 2 20 SER 20 20 20 SER SER D . n B 2 21 ASP 21 21 21 ASP ASP D . n B 2 22 THR 22 22 22 THR THR D . n B 2 23 ILE 23 23 23 ILE ILE D . n B 2 24 GLU 24 24 24 GLU GLU D . n B 2 25 ASN 25 25 25 ASN ASN D . n B 2 26 VAL 26 26 26 VAL VAL D . n B 2 27 LYS 27 27 27 LYS LYS D . n B 2 28 ALA 28 28 28 ALA ALA D . n B 2 29 LYS 29 29 29 LYS LYS D . n B 2 30 ILE 30 30 30 ILE ILE D . n B 2 31 GLN 31 31 31 GLN GLN D . n B 2 32 ASP 32 32 32 ASP ASP D . n B 2 33 LYS 33 33 33 LYS LYS D . n B 2 34 GLU 34 34 34 GLU GLU D . n B 2 35 GLY 35 35 35 GLY GLY D . n B 2 36 ILE 36 36 36 ILE ILE D . n B 2 37 PRO 37 37 37 PRO PRO D . n B 2 38 PRO 38 38 38 PRO PRO D . n B 2 39 ASP 39 39 39 ASP ASP D . n B 2 40 GLN 40 40 40 GLN GLN D . n B 2 41 GLN 41 41 41 GLN GLN D . n B 2 42 ARG 42 42 42 ARG ARG D . n B 2 43 LEU 43 43 43 LEU LEU D . n B 2 44 ILE 44 44 44 ILE ILE D . n B 2 45 PHE 45 45 45 PHE PHE D . n B 2 46 ALA 46 46 46 ALA ALA D . n B 2 47 GLY 47 47 47 GLY GLY D . n B 2 48 ARG 48 48 48 ARG ARG D . n B 2 49 GLN 49 49 49 GLN GLN D . n B 2 50 LEU 50 50 50 LEU LEU D . n B 2 51 GLU 51 51 51 GLU GLU D . n B 2 52 ASP 52 52 52 ASP ASP D . n B 2 53 GLY 53 53 53 GLY GLY D . n B 2 54 ARG 54 54 54 ARG ARG D . n B 2 55 THR 55 55 55 THR THR D . n B 2 56 LEU 56 56 56 LEU LEU D . n B 2 57 SER 57 57 57 SER SER D . n B 2 58 ASP 58 58 58 ASP ASP D . n B 2 59 TYR 59 59 59 TYR TYR D . n B 2 60 ASN 60 60 60 ASN ASN D . n B 2 61 ILE 61 61 61 ILE ILE D . n B 2 62 GLN 62 62 62 GLN GLN D . n B 2 63 LYS 63 63 63 LYS LYS D . n B 2 64 GLU 64 64 64 GLU GLU D . n B 2 65 SER 65 65 65 SER SER D . n B 2 66 THR 66 66 66 THR THR D . n B 2 67 LEU 67 67 67 LEU LEU D . n B 2 68 HIS 68 68 68 HIS HIS D . n B 2 69 LEU 69 69 69 LEU LEU D . n B 2 70 VAL 70 70 70 VAL VAL D . n B 2 71 LEU 71 71 71 LEU LEU D . n B 2 72 ARG 72 72 72 ARG ARG D . n B 2 73 LEU 73 73 73 LEU LEU D . n B 2 74 ARG 74 74 74 ARG ARG D . n B 2 75 GLY 75 75 75 GLY GLY D . n B 2 76 GLY 76 76 76 GLY GLY D . n C 3 1 MET 1 1 1 MET MET E . n C 3 2 GLN 2 2 2 GLN GLN E . n C 3 3 ILE 3 3 3 ILE ILE E . n C 3 4 PHE 4 4 4 PHE PHE E . n C 3 5 VAL 5 5 5 VAL VAL E . n C 3 6 LYS 6 6 6 LYS LYS E . n C 3 7 THR 7 7 7 THR THR E . n C 3 8 LEU 8 8 8 LEU LEU E . n C 3 9 THR 9 9 9 THR THR E . n C 3 10 GLY 10 10 10 GLY GLY E . n C 3 11 LYS 11 11 11 LYS LYS E . n C 3 12 THR 12 12 12 THR THR E . n C 3 13 ILE 13 13 13 ILE ILE E . n C 3 14 THR 14 14 14 THR THR E . n C 3 15 LEU 15 15 15 LEU LEU E . n C 3 16 GLU 16 16 16 GLU GLU E . n C 3 17 VAL 17 17 17 VAL VAL E . n C 3 18 GLU 18 18 18 GLU GLU E . n C 3 19 PRO 19 19 19 PRO PRO E . n C 3 20 SER 20 20 20 SER SER E . n C 3 21 ASP 21 21 21 ASP ASP E . n C 3 22 THR 22 22 22 THR THR E . n C 3 23 ILE 23 23 23 ILE ILE E . n C 3 24 GLU 24 24 24 GLU GLU E . n C 3 25 ASN 25 25 25 ASN ASN E . n C 3 26 VAL 26 26 26 VAL VAL E . n C 3 27 LYS 27 27 27 LYS LYS E . n C 3 28 ALA 28 28 28 ALA ALA E . n C 3 29 LYS 29 29 29 LYS LYS E . n C 3 30 ILE 30 30 30 ILE ILE E . n C 3 31 GLN 31 31 31 GLN GLN E . n C 3 32 ASP 32 32 32 ASP ASP E . n C 3 33 LYS 33 33 33 LYS LYS E . n C 3 34 GLU 34 34 34 GLU GLU E . n C 3 35 GLY 35 35 35 GLY GLY E . n C 3 36 ILE 36 36 36 ILE ILE E . n C 3 37 PRO 37 37 37 PRO PRO E . n C 3 38 PRO 38 38 38 PRO PRO E . n C 3 39 ASP 39 39 39 ASP ASP E . n C 3 40 GLN 40 40 40 GLN GLN E . n C 3 41 GLN 41 41 41 GLN GLN E . n C 3 42 ARG 42 42 42 ARG ARG E . n C 3 43 LEU 43 43 43 LEU LEU E . n C 3 44 ILE 44 44 44 ILE ILE E . n C 3 45 PHE 45 45 45 PHE PHE E . n C 3 46 ALA 46 46 46 ALA ALA E . n C 3 47 GLY 47 47 47 GLY GLY E . n C 3 48 LYS 48 48 48 LYS LYS E . n C 3 49 GLN 49 49 49 GLN GLN E . n C 3 50 LEU 50 50 50 LEU LEU E . n C 3 51 GLU 51 51 51 GLU GLU E . n C 3 52 ASP 52 52 52 ASP ASP E . n C 3 53 GLY 53 53 53 GLY GLY E . n C 3 54 ARG 54 54 54 ARG ARG E . n C 3 55 THR 55 55 55 THR THR E . n C 3 56 LEU 56 56 56 LEU LEU E . n C 3 57 SER 57 57 57 SER SER E . n C 3 58 ASP 58 58 58 ASP ASP E . n C 3 59 TYR 59 59 59 TYR TYR E . n C 3 60 ASN 60 60 60 ASN ASN E . n C 3 61 ILE 61 61 61 ILE ILE E . n C 3 62 GLN 62 62 62 GLN GLN E . n C 3 63 LYS 63 63 63 LYS LYS E . n C 3 64 GLU 64 64 64 GLU GLU E . n C 3 65 SER 65 65 65 SER SER E . n C 3 66 THR 66 66 66 THR THR E . n C 3 67 LEU 67 67 67 LEU LEU E . n C 3 68 HIS 68 68 68 HIS HIS E . n C 3 69 LEU 69 69 69 LEU LEU E . n C 3 70 VAL 70 70 70 VAL VAL E . n C 3 71 LEU 71 71 71 LEU LEU E . n C 3 72 ARG 72 72 72 ARG ARG E . n C 3 73 LEU 73 73 73 LEU LEU E . n C 3 74 ARG 74 74 ? ? ? E . n C 3 75 GLY 75 75 ? ? ? E . n C 3 76 GLY 76 76 ? ? ? E . n C 3 77 ASP 77 77 ? ? ? E . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1860 ? 1 MORE -2 ? 1 'SSA (A^2)' 12810 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-10-23 2 'Structure model' 1 1 2019-11-20 3 'Structure model' 1 2 2020-01-01 4 'Structure model' 1 3 2020-01-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' pdbx_audit_support 4 4 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_pdbx_audit_support.funding_organization' 6 4 'Structure model' '_citation.journal_volume' 7 4 'Structure model' '_citation.page_first' 8 4 'Structure model' '_citation.page_last' 9 4 'Structure model' '_citation.year' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'Branched K11/K48-Linked Tri-Ubiquitin' 120 ? uM '[U-15N-distal11]' 2 'Branched K11/K48-Linked Tri-Ubiquitin' 100 ? uM '[U-15N-distal48]' 3 'Branched K11/K48-Linked Tri-Ubiquitin' 60 ? uM '[U-15N-distal11]' 4 'Branched K11/K48-Linked Tri-Ubiquitin' 110 ? uM '[U-15N-distal48]' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B GLY 76 ? ? HZ3 E LYS 11 ? ? 1.50 2 1 O D GLY 76 ? ? HZ3 E LYS 48 ? ? 1.56 3 2 HZ2 E LYS 63 ? ? OE2 E GLU 64 ? ? 1.58 4 2 HZ3 D LYS 11 ? ? OE2 D GLU 34 ? ? 1.59 5 3 O D GLY 76 ? ? HZ2 E LYS 48 ? ? 1.56 6 4 HZ3 D LYS 11 ? ? OE2 D GLU 34 ? ? 1.58 7 4 HZ2 E LYS 63 ? ? OE2 E GLU 64 ? ? 1.60 8 5 HZ3 D LYS 11 ? ? OE2 D GLU 34 ? ? 1.57 9 5 OD2 B ASP 21 ? ? HZ3 B LYS 29 ? ? 1.58 10 5 O B GLY 76 ? ? HZ3 E LYS 11 ? ? 1.58 11 6 HZ3 B LYS 33 ? ? OE1 B GLU 34 ? ? 1.57 12 6 O B GLY 76 ? ? HZ1 E LYS 11 ? ? 1.58 13 7 O B GLY 76 ? ? HZ3 E LYS 11 ? ? 1.57 14 7 HZ3 E LYS 27 ? ? OD1 E ASP 52 ? ? 1.60 15 7 HZ1 E LYS 11 ? ? OE2 E GLU 34 ? ? 1.60 16 7 HG1 D THR 55 ? ? OD2 D ASP 58 ? ? 1.60 17 9 O D GLY 76 ? ? HZ3 E LYS 48 ? ? 1.54 18 10 HZ1 D LYS 27 ? ? OD1 D ASP 52 ? ? 1.58 19 10 O D GLY 76 ? ? HZ1 E LYS 48 ? ? 1.59 20 10 OD2 E ASP 21 ? ? HZ1 E LYS 29 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR B 7 ? ? -87.67 -102.50 2 1 LEU B 8 ? ? -143.53 -47.29 3 1 GLN D 62 ? ? -120.96 -166.89 4 2 GLN B 62 ? ? -111.77 -159.87 5 2 ARG D 42 ? ? -166.12 97.59 6 2 ALA D 46 ? ? 69.11 -37.64 7 2 GLN D 62 ? ? -110.56 -166.28 8 2 THR E 7 ? ? -122.41 -166.81 9 2 GLN E 62 ? ? -107.83 -140.68 10 3 ALA B 46 ? ? 66.97 -67.49 11 3 GLN E 62 ? ? -100.38 -164.87 12 4 ALA B 46 ? ? 68.85 -67.53 13 4 GLN B 62 ? ? -113.71 -162.51 14 4 GLU D 34 ? ? -98.86 -83.53 15 4 ASN D 60 ? ? 64.33 60.80 16 4 GLN D 62 ? ? -119.20 -155.72 17 5 GLN B 62 ? ? -116.34 -161.68 18 5 ALA D 46 ? ? 68.38 -22.24 19 5 GLN D 62 ? ? -107.26 -166.13 20 6 ARG B 42 ? ? -119.04 74.26 21 6 ALA B 46 ? ? 68.52 -71.03 22 6 GLN B 62 ? ? -112.13 -162.92 23 6 LYS D 33 ? ? -77.08 -71.57 24 6 GLN D 62 ? ? -99.51 -151.23 25 6 ARG D 72 ? ? -110.25 63.41 26 6 LEU D 73 ? ? -118.01 -85.65 27 7 ALA D 46 ? ? 71.43 -37.50 28 7 GLN D 62 ? ? -118.44 -158.49 29 7 ARG D 72 ? ? -101.54 69.37 30 7 ARG D 74 ? ? -70.08 -73.40 31 7 GLU E 34 ? ? -97.25 -103.00 32 8 ALA B 46 ? ? 70.22 -66.14 33 8 GLN B 62 ? ? -122.12 -164.84 34 8 GLN D 62 ? ? -126.13 -123.20 35 8 GLU E 34 ? ? -97.29 -65.40 36 9 THR B 9 ? ? -100.48 -132.82 37 9 GLU B 34 ? ? -91.60 -72.14 38 9 GLN B 62 ? ? -125.31 -162.45 39 9 ARG B 72 ? ? -104.49 -63.04 40 9 ARG B 74 ? ? -131.58 -40.34 41 9 GLN D 62 ? ? -103.40 -168.92 42 10 LYS B 33 ? ? -92.69 -61.91 43 10 ALA B 46 ? ? 69.34 -40.60 44 10 GLN B 62 ? ? -112.29 -168.60 45 10 LYS E 33 ? ? -69.70 -78.50 46 10 GLN E 62 ? ? -105.96 -169.22 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 E ARG 74 ? C ARG 74 2 1 Y 1 E GLY 75 ? C GLY 75 3 1 Y 1 E GLY 76 ? C GLY 76 4 1 Y 1 E ASP 77 ? C ASP 77 5 2 Y 1 E ARG 74 ? C ARG 74 6 2 Y 1 E GLY 75 ? C GLY 75 7 2 Y 1 E GLY 76 ? C GLY 76 8 2 Y 1 E ASP 77 ? C ASP 77 9 3 Y 1 E ARG 74 ? C ARG 74 10 3 Y 1 E GLY 75 ? C GLY 75 11 3 Y 1 E GLY 76 ? C GLY 76 12 3 Y 1 E ASP 77 ? C ASP 77 13 4 Y 1 E ARG 74 ? C ARG 74 14 4 Y 1 E GLY 75 ? C GLY 75 15 4 Y 1 E GLY 76 ? C GLY 76 16 4 Y 1 E ASP 77 ? C ASP 77 17 5 Y 1 E ARG 74 ? C ARG 74 18 5 Y 1 E GLY 75 ? C GLY 75 19 5 Y 1 E GLY 76 ? C GLY 76 20 5 Y 1 E ASP 77 ? C ASP 77 21 6 Y 1 E ARG 74 ? C ARG 74 22 6 Y 1 E GLY 75 ? C GLY 75 23 6 Y 1 E GLY 76 ? C GLY 76 24 6 Y 1 E ASP 77 ? C ASP 77 25 7 Y 1 E ARG 74 ? C ARG 74 26 7 Y 1 E GLY 75 ? C GLY 75 27 7 Y 1 E GLY 76 ? C GLY 76 28 7 Y 1 E ASP 77 ? C ASP 77 29 8 Y 1 E ARG 74 ? C ARG 74 30 8 Y 1 E GLY 75 ? C GLY 75 31 8 Y 1 E GLY 76 ? C GLY 76 32 8 Y 1 E ASP 77 ? C ASP 77 33 9 Y 1 E ARG 74 ? C ARG 74 34 9 Y 1 E GLY 75 ? C GLY 75 35 9 Y 1 E GLY 76 ? C GLY 76 36 9 Y 1 E ASP 77 ? C ASP 77 37 10 Y 1 E ARG 74 ? C ARG 74 38 10 Y 1 E GLY 75 ? C GLY 75 39 10 Y 1 E GLY 76 ? C GLY 76 40 10 Y 1 E ASP 77 ? C ASP 77 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM065334 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #