HEADER TOXIN 25-APR-19 6OQ6 TITLE STRUCTURE OF THE PORE FORMING FRAGMENT OF CLOSTRIDIUM DIFFICILE TOXIN TITLE 2 B IN COMPLEX WITH VHH 5D COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5D; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE; SOURCE 3 ORGANISM_TAXID: 1496; SOURCE 4 GENE: TCDB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CAMELIDAE; SOURCE 9 ORGANISM_TAXID: 9835; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN VHH, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR P.CHEN,K.LAM,R.JIN REVDAT 6 30-OCT-24 6OQ6 1 REMARK REVDAT 5 11-OCT-23 6OQ6 1 REMARK REVDAT 4 04-DEC-19 6OQ6 1 REMARK REVDAT 3 21-AUG-19 6OQ6 1 JRNL REVDAT 2 31-JUL-19 6OQ6 1 JRNL REVDAT 1 10-JUL-19 6OQ6 0 JRNL AUTH P.CHEN,K.H.LAM,Z.LIU,F.A.MINDLIN,B.CHEN,C.B.GUTIERREZ, JRNL AUTH 2 L.HUANG,Y.ZHANG,T.HAMZA,H.FENG,T.MATSUI,M.E.BOWEN,K.PERRY, JRNL AUTH 3 R.JIN JRNL TITL STRUCTURE OF THE FULL-LENGTH CLOSTRIDIUM DIFFICILE TOXIN B. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 712 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31308519 JRNL DOI 10.1038/S41594-019-0268-0 REMARK 2 REMARK 2 RESOLUTION. 2.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 147.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 3 NUMBER OF REFLECTIONS : 11773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 599 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 11.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 4 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3719 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : -1.06000 REMARK 3 B33 (A**2) : 3.42000 REMARK 3 B12 (A**2) : -0.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.488 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.460 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 62.367 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.881 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3792 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5144 ; 1.216 ; 1.624 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 6.556 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;33.645 ;22.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 651 ;21.266 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;23.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 501 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2881 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1878 ; 0.216 ; 2.488 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2344 ; 0.390 ; 3.732 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1912 ; 0.188 ; 2.496 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 15321 ; 0.979 ;46.978 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1090 A 1431 REMARK 3 ORIGIN FOR THE GROUP (A): -42.0970 -42.0759 2.5681 REMARK 3 T TENSOR REMARK 3 T11: 0.2234 T22: 0.2255 REMARK 3 T33: 0.2169 T12: 0.0842 REMARK 3 T13: 0.0014 T23: -0.1364 REMARK 3 L TENSOR REMARK 3 L11: 2.2084 L22: 1.7617 REMARK 3 L33: 3.7671 L12: 0.1044 REMARK 3 L13: -1.1195 L23: -0.4195 REMARK 3 S TENSOR REMARK 3 S11: 0.2312 S12: -0.4197 S13: 0.4802 REMARK 3 S21: 0.2166 S22: 0.0711 S23: -0.4051 REMARK 3 S31: -0.4902 S32: 0.3636 S33: -0.3023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 127 REMARK 3 ORIGIN FOR THE GROUP (A): -56.7286 -48.8687 -23.7135 REMARK 3 T TENSOR REMARK 3 T11: 0.2623 T22: 0.2163 REMARK 3 T33: 0.0565 T12: 0.1608 REMARK 3 T13: 0.0222 T23: 0.0901 REMARK 3 L TENSOR REMARK 3 L11: 1.5962 L22: 2.1301 REMARK 3 L33: 5.7471 L12: 0.1550 REMARK 3 L13: 0.8002 L23: 0.1374 REMARK 3 S TENSOR REMARK 3 S11: -0.0514 S12: 0.2870 S13: 0.2222 REMARK 3 S21: -0.3506 S22: 0.0391 S23: 0.1710 REMARK 3 S31: -0.1715 S32: -0.2942 S33: 0.0123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000241083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.970 REMARK 200 RESOLUTION RANGE LOW (A) : 147.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.37300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6OQ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 0.2 M LITHIUM REMARK 280 SULFATE, 18% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.37333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.74667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.56000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.93333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.18667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.37333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 52.74667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.93333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.56000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.18667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1071 REMARK 465 LEU A 1072 REMARK 465 THR A 1073 REMARK 465 THR A 1074 REMARK 465 ALA A 1075 REMARK 465 THR A 1076 REMARK 465 THR A 1077 REMARK 465 ALA A 1078 REMARK 465 ILE A 1079 REMARK 465 ILE A 1080 REMARK 465 THR A 1081 REMARK 465 SER A 1082 REMARK 465 SER A 1083 REMARK 465 LEU A 1084 REMARK 465 GLY A 1085 REMARK 465 ILE A 1086 REMARK 465 ALA A 1087 REMARK 465 SER A 1088 REMARK 465 GLY A 1089 REMARK 465 GLY A 1432 REMARK 465 GLU A 1433 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 GLU D 128 REMARK 465 PRO D 129 REMARK 465 LYS D 130 REMARK 465 THR D 131 REMARK 465 PRO D 132 REMARK 465 LYS D 133 REMARK 465 PRO D 134 REMARK 465 GLN D 135 REMARK 465 THR D 136 REMARK 465 SER D 137 REMARK 465 GLY D 138 REMARK 465 ALA D 139 REMARK 465 PRO D 140 REMARK 465 VAL D 141 REMARK 465 PRO D 142 REMARK 465 TYR D 143 REMARK 465 PRO D 144 REMARK 465 ASP D 145 REMARK 465 PRO D 146 REMARK 465 LEU D 147 REMARK 465 GLU D 148 REMARK 465 PRO D 149 REMARK 465 ARG D 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A1092 -5.01 -57.20 REMARK 500 ASP A1142 -3.13 71.96 REMARK 500 ASP A1184 -4.63 76.93 REMARK 500 LEU A1216 42.47 -109.30 REMARK 500 ASN A1246 -177.76 -170.27 REMARK 500 PHE A1270 -120.43 52.40 REMARK 500 SER A1320 34.88 -141.14 REMARK 500 GLU A1380 111.28 -37.39 REMARK 500 ASN A1386 -123.66 55.45 REMARK 500 ASN A1400 6.91 -152.17 REMARK 500 PHE A1407 -168.82 -169.57 REMARK 500 GLN D 1 -120.79 57.96 REMARK 500 LEU D 4 52.18 -146.33 REMARK 500 SER D 17 146.68 -173.37 REMARK 500 LEU D 29 32.95 -91.06 REMARK 500 SER D 54 21.90 86.77 REMARK 500 ALA D 55 -132.93 53.48 REMARK 500 ARG D 56 -8.07 64.84 REMARK 500 THR D 57 85.30 -156.10 REMARK 500 ASN D 77 49.76 36.48 REMARK 500 SER D 104 65.58 -107.08 REMARK 500 TRP D 109 15.26 -141.45 REMARK 500 ALA D 111 -0.75 68.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 6OQ6 A 1072 1433 UNP M4NKV9 M4NKV9_CLODI 1072 1433 DBREF 6OQ6 D -2 150 PDB 6OQ6 6OQ6 -2 150 SEQADV 6OQ6 SER A 1071 UNP M4NKV9 EXPRESSION TAG SEQRES 1 A 363 SER LEU THR THR ALA THR THR ALA ILE ILE THR SER SER SEQRES 2 A 363 LEU GLY ILE ALA SER GLY PHE SER ILE LEU LEU VAL PRO SEQRES 3 A 363 LEU ALA GLY ILE SER ALA GLY ILE PRO SER LEU VAL ASN SEQRES 4 A 363 ASN GLU LEU VAL LEU ARG ASP LYS ALA THR LYS VAL VAL SEQRES 5 A 363 ASP TYR PHE LYS HIS VAL SER LEU VAL GLU THR GLU GLY SEQRES 6 A 363 VAL PHE THR LEU LEU ASP ASP LYS VAL MET MET PRO GLN SEQRES 7 A 363 ASP ASP LEU VAL ILE SER GLU ILE ASP PHE ASN ASN ASN SEQRES 8 A 363 SER ILE VAL LEU GLY LYS CYS GLU ILE TRP ARG MET GLU SEQRES 9 A 363 GLY GLY SER GLY HIS THR VAL THR ASP ASP ILE ASP HIS SEQRES 10 A 363 PHE PHE SER ALA PRO SER ILE THR TYR ARG GLU PRO HIS SEQRES 11 A 363 LEU SER ILE TYR ASP VAL LEU GLU VAL GLN LYS GLU GLU SEQRES 12 A 363 LEU ASP LEU SER LYS ASP LEU MET VAL LEU PRO ASN ALA SEQRES 13 A 363 PRO ASN ARG VAL PHE ALA TRP GLU THR GLY TRP THR PRO SEQRES 14 A 363 GLY LEU ARG SER LEU GLU ASN ASP GLY THR LYS LEU LEU SEQRES 15 A 363 ASP ARG ILE ARG ASP ASN TYR GLU GLY GLU PHE TYR TRP SEQRES 16 A 363 ARG TYR PHE ALA PHE ILE ALA ASP ALA LEU ILE THR THR SEQRES 17 A 363 LEU LYS PRO ARG TYR GLU ASP THR ASN ILE ARG ILE ASN SEQRES 18 A 363 LEU ASP SER ASN THR ARG SER PHE ILE VAL PRO ILE ILE SEQRES 19 A 363 THR THR GLU TYR ILE ARG GLU LYS LEU SER TYR SER PHE SEQRES 20 A 363 TYR GLY SER GLY GLY THR TYR ALA LEU SER LEU SER GLN SEQRES 21 A 363 TYR ASN MET GLY ILE ASN ILE GLU LEU SER GLU SER ASP SEQRES 22 A 363 VAL TRP ILE ILE ASP VAL ASP ASN VAL VAL ARG ASP VAL SEQRES 23 A 363 THR ILE GLU SER ASP LYS ILE LYS LYS GLY ASP LEU ILE SEQRES 24 A 363 GLU GLY ILE LEU SER THR LEU SER ILE GLU GLU ASN LYS SEQRES 25 A 363 ILE ILE LEU ASN SER HIS GLU ILE ASN PHE SER GLY GLU SEQRES 26 A 363 VAL ASN GLY SER ASN GLY PHE VAL SER LEU THR PHE SER SEQRES 27 A 363 ILE LEU GLU GLY ILE ASN ALA ILE ILE GLU VAL ASP LEU SEQRES 28 A 363 LEU SER LYS SER TYR LYS LEU LEU ILE SER GLY GLU SEQRES 1 D 153 SER ASN SER GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 D 153 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS GLU SEQRES 3 D 153 ALA SER GLY PHE THR LEU ASP TYR TYR GLY ILE GLY TRP SEQRES 4 D 153 PHE ARG GLN PRO PRO GLY LYS GLU ARG GLU ALA VAL SER SEQRES 5 D 153 TYR ILE SER ALA SER ALA ARG THR ILE LEU TYR ALA ASP SEQRES 6 D 153 SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA SEQRES 7 D 153 LYS ASN ALA VAL TYR LEU GLN MET ASN SER LEU LYS ARG SEQRES 8 D 153 GLU ASP THR ALA VAL TYR TYR CYS ALA ARG ARG ARG PHE SEQRES 9 D 153 SER ALA SER SER VAL ASN ARG TRP LEU ALA ASP ASP TYR SEQRES 10 D 153 ASP VAL TRP GLY ARG GLY THR GLN VAL ALA VAL SER SER SEQRES 11 D 153 GLU PRO LYS THR PRO LYS PRO GLN THR SER GLY ALA PRO SEQRES 12 D 153 VAL PRO TYR PRO ASP PRO LEU GLU PRO ARG HELIX 1 AA1 LYS A 1117 SER A 1129 1 13 HELIX 2 AA2 SER A 1129 GLU A 1134 1 6 HELIX 3 AA3 TYR A 1204 LEU A 1207 5 4 HELIX 4 AA4 ASN A 1246 TYR A 1259 1 14 HELIX 5 AA5 THR A 1306 GLU A 1311 1 6 HELIX 6 AA6 GLY A 1371 THR A 1375 5 5 HELIX 7 AA7 LYS D 87 THR D 91 5 5 SHEET 1 AA1 2 SER A1106 LEU A1107 0 SHEET 2 AA1 2 LEU A1112 VAL A1113 -1 O VAL A1113 N SER A1106 SHEET 1 AA2 9 PHE A1137 LEU A1140 0 SHEET 2 AA2 9 VAL A1144 PRO A1147 -1 O VAL A1144 N LEU A1140 SHEET 3 AA2 9 LEU A1220 VAL A1222 1 O LEU A1220 N MET A1145 SHEET 4 AA2 9 THR A1296 ILE A1300 1 O SER A1298 N MET A1221 SHEET 5 AA2 9 THR A1323 SER A1327 1 O ALA A1325 N PHE A1299 SHEET 6 AA2 9 VAL A1344 ASP A1348 1 O VAL A1344 N TYR A1324 SHEET 7 AA2 9 PHE A1402 LEU A1410 1 O SER A1404 N TRP A1345 SHEET 8 AA2 9 ILE A1413 ASP A1420 -1 O ILE A1417 N LEU A1405 SHEET 9 AA2 9 SER A1425 SER A1431 -1 O SER A1425 N ASP A1420 SHEET 1 AA3 8 SER A1162 LEU A1165 0 SHEET 2 AA3 8 ILE A1153 ASP A1157 -1 N ASP A1157 O SER A1162 SHEET 3 AA3 8 THR A1286 ASN A1291 1 O ARG A1289 N ILE A1156 SHEET 4 AA3 8 LEU A1313 TYR A1318 1 O SER A1316 N ILE A1290 SHEET 5 AA3 8 ILE A1335 LEU A1339 1 O ASN A1336 N PHE A1317 SHEET 6 AA3 8 HIS A1388 GLY A1394 1 O SER A1393 N LEU A1339 SHEET 7 AA3 8 LYS A1382 LEU A1385 -1 N ILE A1383 O ILE A1390 SHEET 8 AA3 8 SER A1377 GLU A1379 -1 N SER A1377 O ILE A1384 SHEET 1 AA4 7 THR A1180 THR A1182 0 SHEET 2 AA4 7 ILE A1185 PHE A1188 -1 O HIS A1187 N THR A1180 SHEET 3 AA4 7 ARG A1266 ALA A1269 1 O PHE A1268 N ASP A1186 SHEET 4 AA4 7 ALA A1272 LYS A1280 -1 O ALA A1274 N TYR A1267 SHEET 5 AA4 7 ARG A1229 TRP A1237 -1 N GLU A1234 O THR A1277 SHEET 6 AA4 7 CYS A1168 ILE A1170 1 N GLU A1169 O PHE A1231 SHEET 7 AA4 7 LEU A1201 SER A1202 -1 O LEU A1201 N ILE A1170 SHEET 1 AA5 2 ARG A1172 GLU A1174 0 SHEET 2 AA5 2 SER A1193 THR A1195 -1 O SER A1193 N GLU A1174 SHEET 1 AA6 2 ARG A1354 ILE A1358 0 SHEET 2 AA6 2 ILE A1363 LEU A1368 -1 O GLY A1366 N ASP A1355 SHEET 1 AA7 4 GLN D 3 SER D 7 0 SHEET 2 AA7 4 GLY D 16 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 AA7 4 ALA D 78 LEU D 86 -1 O MET D 83 N LEU D 18 SHEET 4 AA7 4 THR D 69 ASP D 73 -1 N SER D 71 O TYR D 80 SHEET 1 AA8 6 LEU D 11 VAL D 12 0 SHEET 2 AA8 6 THR D 121 VAL D 125 1 O ALA D 124 N VAL D 12 SHEET 3 AA8 6 ALA D 92 ARG D 99 -1 N ALA D 92 O VAL D 123 SHEET 4 AA8 6 GLY D 33 GLN D 39 -1 N GLY D 33 O ARG D 99 SHEET 5 AA8 6 GLU D 46 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 AA8 6 ILE D 58 TYR D 60 -1 O LEU D 59 N TYR D 50 SHEET 1 AA9 4 LEU D 11 VAL D 12 0 SHEET 2 AA9 4 THR D 121 VAL D 125 1 O ALA D 124 N VAL D 12 SHEET 3 AA9 4 ALA D 92 ARG D 99 -1 N ALA D 92 O VAL D 123 SHEET 4 AA9 4 TYR D 114 TRP D 117 -1 O VAL D 116 N ARG D 98 SSBOND 1 CYS D 22 CYS D 96 1555 1555 2.08 CRYST1 169.820 169.820 79.120 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005889 0.003400 0.000000 0.00000 SCALE2 0.000000 0.006800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012639 0.00000