HEADER TOXIN 25-APR-19 6OQ7 TITLE STRUCTURE OF THE GTD DOMAIN OF CLOSTRIDIUM DIFFICILE TOXIN B IN TITLE 2 COMPLEX WITH VHH E3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: E3; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE; SOURCE 3 ORGANISM_TAXID: 1496; SOURCE 4 GENE: TCDB; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS MEGATERIUM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1404; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CAMELIDAE; SOURCE 9 ORGANISM_TAXID: 9835; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN VHH, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR P.CHEN,K.LAM,R.JIN REVDAT 7 23-OCT-24 6OQ7 1 REMARK REVDAT 6 11-OCT-23 6OQ7 1 HETSYN REVDAT 5 29-JUL-20 6OQ7 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 04-DEC-19 6OQ7 1 REMARK REVDAT 3 21-AUG-19 6OQ7 1 JRNL REVDAT 2 31-JUL-19 6OQ7 1 JRNL REVDAT 1 10-JUL-19 6OQ7 0 JRNL AUTH P.CHEN,K.H.LAM,Z.LIU,F.A.MINDLIN,B.CHEN,C.B.GUTIERREZ, JRNL AUTH 2 L.HUANG,Y.ZHANG,T.HAMZA,H.FENG,T.MATSUI,M.E.BOWEN,K.PERRY, JRNL AUTH 3 R.JIN JRNL TITL STRUCTURE OF THE FULL-LENGTH CLOSTRIDIUM DIFFICILE TOXIN B. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 712 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31308519 JRNL DOI 10.1038/S41594-019-0268-0 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 30060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1562 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2006 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.34000 REMARK 3 B22 (A**2) : 1.44000 REMARK 3 B33 (A**2) : -4.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.379 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5363 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7252 ; 0.998 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 648 ; 6.159 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 288 ;37.595 ;24.792 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 976 ;17.719 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.394 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 714 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4046 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2598 ; 2.163 ; 4.916 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3244 ; 3.433 ; 7.367 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2765 ; 2.915 ; 5.083 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8011 ; 6.357 ;65.316 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000241126. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 43.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6OQ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM ACETATE AND 20% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.00900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.91250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.04800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.91250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.00900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.04800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 HIS A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 SER C 0 REMARK 465 GLN C 1 REMARK 465 VAL C 2 REMARK 465 GLU C 112 REMARK 465 PRO C 113 REMARK 465 LYS C 114 REMARK 465 THR C 115 REMARK 465 PRO C 116 REMARK 465 LYS C 117 REMARK 465 PRO C 118 REMARK 465 GLN C 119 REMARK 465 THR C 120 REMARK 465 SER C 121 REMARK 465 GLY C 122 REMARK 465 ALA C 123 REMARK 465 PRO C 124 REMARK 465 VAL C 125 REMARK 465 PRO C 126 REMARK 465 TYR C 127 REMARK 465 PRO C 128 REMARK 465 ASP C 129 REMARK 465 PRO C 130 REMARK 465 LEU C 131 REMARK 465 GLU C 132 REMARK 465 PRO C 133 REMARK 465 ARG C 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 17 -9.06 82.26 REMARK 500 ASN A 235 54.67 -141.18 REMARK 500 SER A 306 0.29 -67.45 REMARK 500 SER A 470 2.85 -150.76 REMARK 500 ALA A 512 57.64 -92.96 REMARK 500 GLU A 541 46.13 75.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 288 OD2 REMARK 620 2 GLU A 516 OE2 81.5 REMARK 620 3 UDP A 601 O2A 78.4 158.7 REMARK 620 4 UDP A 601 O3B 166.9 109.2 89.9 REMARK 620 5 HOH A 706 O 93.4 90.5 97.6 94.0 REMARK 620 6 HOH A 728 O 75.0 85.0 83.0 97.9 168.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 288 OD2 REMARK 620 2 GLN A 515 O 78.6 REMARK 620 3 ASN A 518 O 143.6 76.1 REMARK 620 4 UDP A 601 O1A 106.9 153.5 85.8 REMARK 620 5 UDP A 601 O2A 56.2 131.9 131.5 51.4 REMARK 620 6 HOH A 728 O 59.2 84.1 92.2 77.3 60.2 REMARK 620 7 HOH A 783 O 89.8 104.2 121.6 101.8 92.3 146.1 REMARK 620 N 1 2 3 4 5 6 DBREF 6OQ7 A 1 543 UNP M4NKV9 M4NKV9_CLODI 1 543 DBREF 6OQ7 C -2 134 PDB 6OQ7 6OQ7 -2 134 SEQADV 6OQ7 HIS A 544 UNP M4NKV9 EXPRESSION TAG SEQADV 6OQ7 HIS A 545 UNP M4NKV9 EXPRESSION TAG SEQADV 6OQ7 HIS A 546 UNP M4NKV9 EXPRESSION TAG SEQADV 6OQ7 HIS A 547 UNP M4NKV9 EXPRESSION TAG SEQADV 6OQ7 HIS A 548 UNP M4NKV9 EXPRESSION TAG SEQADV 6OQ7 HIS A 549 UNP M4NKV9 EXPRESSION TAG SEQRES 1 A 549 MET SER LEU VAL ASN ARG LYS GLN LEU GLU LYS MET ALA SEQRES 2 A 549 ASN VAL ARG PHE ARG VAL GLN GLU ASP GLU TYR VAL ALA SEQRES 3 A 549 ILE LEU ASP ALA LEU GLU GLU TYR HIS ASN MET SER GLU SEQRES 4 A 549 ASN THR VAL VAL GLU LYS TYR LEU LYS LEU LYS ASP ILE SEQRES 5 A 549 ASN SER LEU THR ASP THR TYR ILE ASP THR TYR LYS LYS SEQRES 6 A 549 SER GLY ARG ASN LYS ALA LEU LYS LYS PHE LYS GLU TYR SEQRES 7 A 549 LEU VAL ILE GLU ILE LEU GLU LEU LYS ASN SER ASN LEU SEQRES 8 A 549 THR PRO VAL GLU LYS ASN LEU HIS PHE ILE TRP ILE GLY SEQRES 9 A 549 GLY GLN ILE ASN ASP THR ALA ILE ASN TYR ILE ASN GLN SEQRES 10 A 549 TRP LYS ASP VAL ASN SER ASP TYR ASN VAL ASN VAL PHE SEQRES 11 A 549 TYR ASP SER ASN ALA PHE LEU ILE ASN THR LEU LYS LYS SEQRES 12 A 549 THR ILE ILE GLU SER ALA SER ASN ASP THR LEU GLU SER SEQRES 13 A 549 PHE ARG GLU ASN LEU ASN ASP PRO GLU PHE ASN HIS THR SEQRES 14 A 549 ALA PHE PHE ARG LYS ARG MET GLN ILE ILE TYR ASP LYS SEQRES 15 A 549 GLN GLN ASN PHE ILE ASN TYR TYR LYS ALA GLN LYS GLU SEQRES 16 A 549 GLU ASN PRO ASP LEU ILE ILE ASP ASP ILE VAL LYS THR SEQRES 17 A 549 TYR LEU SER ASN GLU TYR SER LYS ASP ILE ASP GLU LEU SEQRES 18 A 549 ASN ALA TYR ILE GLU GLU SER LEU ASN LYS VAL THR GLU SEQRES 19 A 549 ASN SER GLY ASN ASP VAL ARG ASN PHE GLU GLU PHE LYS SEQRES 20 A 549 THR GLY GLU VAL PHE ASN LEU TYR GLU GLN GLU LEU VAL SEQRES 21 A 549 GLU ARG TRP ASN LEU ALA GLY ALA SER ASP ILE LEU ARG SEQRES 22 A 549 VAL ALA ILE LEU LYS ASN ILE GLY GLY VAL TYR LEU ASP SEQRES 23 A 549 VAL ASP MET LEU PRO GLY ILE HIS PRO ASP LEU PHE LYS SEQRES 24 A 549 ASP ILE ASN LYS PRO ASP SER VAL LYS THR ALA VAL ASP SEQRES 25 A 549 TRP GLU GLU MET GLN LEU GLU ALA ILE MET LYS HIS LYS SEQRES 26 A 549 GLU TYR ILE PRO GLU TYR THR SER LYS HIS PHE ASP THR SEQRES 27 A 549 LEU ASP GLU GLU VAL GLN SER SER PHE GLU SER VAL LEU SEQRES 28 A 549 ALA SER LYS SER ASP LYS SER GLU ILE PHE LEU PRO LEU SEQRES 29 A 549 GLY ASP ILE GLU VAL SER PRO LEU GLU VAL LYS ILE ALA SEQRES 30 A 549 PHE ALA LYS GLY SER ILE ILE ASN GLN ALA LEU ILE SER SEQRES 31 A 549 ALA LYS ASP SER TYR CYS SER ASP LEU LEU ILE LYS GLN SEQRES 32 A 549 ILE GLN ASN ARG TYR LYS ILE LEU ASN ASP THR LEU GLY SEQRES 33 A 549 PRO ILE ILE SER GLN GLY ASN ASP PHE ASN THR THR MET SEQRES 34 A 549 ASN ASN PHE GLY GLU SER LEU GLY ALA ILE ALA ASN GLU SEQRES 35 A 549 GLU ASN ILE SER PHE ILE ALA LYS ILE GLY SER TYR LEU SEQRES 36 A 549 ARG VAL GLY PHE TYR PRO GLU ALA ASN THR THR ILE THR SEQRES 37 A 549 LEU SER GLY PRO THR ILE TYR ALA GLY ALA TYR LYS ASP SEQRES 38 A 549 LEU LEU THR PHE LYS GLU MET SER ILE ASP THR SER ILE SEQRES 39 A 549 LEU SER SER GLU LEU ARG ASN PHE GLU PHE PRO LYS VAL SEQRES 40 A 549 ASN ILE SER GLN ALA THR GLU GLN GLU LYS ASN SER LEU SEQRES 41 A 549 TRP GLN PHE ASN GLU GLU ARG ALA LYS ILE GLN PHE GLU SEQRES 42 A 549 GLU TYR LYS LYS ASN TYR PHE GLU GLY ALA HIS HIS HIS SEQRES 43 A 549 HIS HIS HIS SEQRES 1 C 137 SER ASN SER GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 C 137 LEU VAL GLN THR GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 C 137 SER SER GLY SER ILE ALA GLY PHE GLU THR VAL THR TRP SEQRES 4 C 137 SER ARG GLN ALA PRO GLY LYS SER LEU GLN TRP VAL ALA SEQRES 5 C 137 SER MET THR LYS THR ASN ASN GLU ILE TYR SER ASP SER SEQRES 6 C 137 VAL LYS GLY ARG PHE ILE ILE SER ARG ASP ASN ALA LYS SEQRES 7 C 137 ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU SEQRES 8 C 137 ASP THR GLY VAL TYR PHE CYS LYS GLY PRO GLU LEU ARG SEQRES 9 C 137 GLY GLN GLY ILE GLN VAL THR VAL SER SER GLU PRO LYS SEQRES 10 C 137 THR PRO LYS PRO GLN THR SER GLY ALA PRO VAL PRO TYR SEQRES 11 C 137 PRO ASP PRO LEU GLU PRO ARG HET UDP A 601 25 HET GLC A 602 12 HET MN A 603 1 HET MG A 604 1 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 GLC C6 H12 O6 FORMUL 5 MN MN 2+ FORMUL 6 MG MG 2+ FORMUL 7 HOH *100(H2 O) HELIX 1 AA1 ASN A 5 ALA A 13 1 9 HELIX 2 AA2 GLU A 21 ASN A 36 1 16 HELIX 3 AA3 THR A 41 TYR A 63 1 23 HELIX 4 AA4 ARG A 68 ASN A 90 1 23 HELIX 5 AA5 ASN A 108 ASN A 122 1 15 HELIX 6 AA6 LEU A 137 PHE A 157 1 21 HELIX 7 AA7 ARG A 158 LEU A 161 5 4 HELIX 8 AA8 ASN A 167 ASN A 197 1 31 HELIX 9 AA9 ILE A 201 SER A 215 1 15 HELIX 10 AB1 ASP A 217 GLU A 234 1 18 HELIX 11 AB2 PHE A 243 THR A 248 1 6 HELIX 12 AB3 VAL A 251 GLU A 261 1 11 HELIX 13 AB4 ASN A 264 ILE A 280 1 17 HELIX 14 AB5 THR A 309 GLU A 326 1 18 HELIX 15 AB6 SER A 333 THR A 338 1 6 HELIX 16 AB7 ASP A 340 LYS A 354 1 15 HELIX 17 AB8 ASP A 356 PHE A 361 1 6 HELIX 18 AB9 SER A 394 SER A 420 1 27 HELIX 19 AC1 ASP A 424 ILE A 439 1 16 HELIX 20 AC2 ASN A 444 ALA A 449 1 6 HELIX 21 AC3 SER A 453 VAL A 457 5 5 HELIX 22 AC4 THR A 465 SER A 470 1 6 HELIX 23 AC5 GLY A 471 PHE A 485 1 15 HELIX 24 AC6 LEU A 495 ARG A 500 1 6 HELIX 25 AC7 ASN A 501 GLU A 503 5 3 HELIX 26 AC8 PRO A 505 VAL A 507 5 3 HELIX 27 AC9 GLU A 514 ASN A 518 5 5 HELIX 28 AD1 ASN A 524 GLU A 541 1 18 HELIX 29 AD2 LYS C 86 THR C 90 5 5 SHEET 1 AA1 2 THR A 92 PRO A 93 0 SHEET 2 AA1 2 GLU A 368 VAL A 369 -1 O VAL A 369 N THR A 92 SHEET 1 AA2 6 GLY A 237 ASP A 239 0 SHEET 2 AA2 6 ASN A 126 TYR A 131 1 N VAL A 129 O ASN A 238 SHEET 3 AA2 6 ASN A 97 ILE A 101 1 N PHE A 100 O PHE A 130 SHEET 4 AA2 6 GLY A 282 LEU A 285 1 O VAL A 283 N HIS A 99 SHEET 5 AA2 6 SER A 382 SER A 390 -1 O SER A 390 N GLY A 282 SHEET 6 AA2 6 LYS A 375 ALA A 379 -1 N ALA A 379 O SER A 382 SHEET 1 AA3 2 LEU A 290 PRO A 291 0 SHEET 2 AA3 2 ILE A 509 SER A 510 -1 O SER A 510 N LEU A 290 SHEET 1 AA4 4 LEU C 4 SER C 7 0 SHEET 2 AA4 4 LEU C 18 SER C 24 -1 O SER C 21 N SER C 7 SHEET 3 AA4 4 THR C 77 MET C 82 -1 O MET C 82 N LEU C 18 SHEET 4 AA4 4 PHE C 67 ARG C 71 -1 N SER C 70 O TYR C 79 SHEET 1 AA5 6 GLY C 10 VAL C 12 0 SHEET 2 AA5 6 ILE C 105 VAL C 109 1 O THR C 108 N VAL C 12 SHEET 3 AA5 6 GLY C 91 LYS C 96 -1 N TYR C 93 O ILE C 105 SHEET 4 AA5 6 VAL C 34 GLN C 39 -1 N SER C 37 O PHE C 94 SHEET 5 AA5 6 GLN C 46 MET C 51 -1 O GLN C 46 N ARG C 38 SHEET 6 AA5 6 GLU C 57 TYR C 59 -1 O ILE C 58 N SER C 50 SSBOND 1 CYS C 22 CYS C 95 1555 1555 2.07 LINK OD2 ASP A 288 MN MN A 603 1555 1555 2.22 LINK OD2 ASP A 288 MG MG A 604 1555 1555 2.79 LINK O GLN A 515 MG MG A 604 1555 1555 2.86 LINK OE2 GLU A 516 MN MN A 603 1555 1555 2.11 LINK O ASN A 518 MG MG A 604 1555 1555 2.69 LINK O2A UDP A 601 MN MN A 603 1555 1555 2.10 LINK O3B UDP A 601 MN MN A 603 1555 1555 1.94 LINK O1A UDP A 601 MG MG A 604 1555 1555 2.97 LINK O2A UDP A 601 MG MG A 604 1555 1555 2.99 LINK MN MN A 603 O HOH A 706 1555 1555 2.16 LINK MN MN A 603 O HOH A 728 1555 1555 2.18 LINK MG MG A 604 O HOH A 728 1555 1555 2.62 LINK MG MG A 604 O HOH A 783 1555 1555 2.52 CRYST1 66.018 104.096 113.825 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015147 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009607 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008785 0.00000