HEADER MEMBRANE PROTEIN 26-APR-19 6OQH TITLE SOLUTION NMR STRUCTURE OF A QUIET OUTER MEMBRANE PROTEIN G NANOPORE TITLE 2 (OMPG MUTANT: DELTA-L6-D215) COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN G; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: OMPG, B1319, JW1312; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS OUTER MEMBRANE PROTEIN B-BARREL SOLUTION NMR, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.R.SANGANNA GARI,P.SEELHEIM,B.LIANG,L.K.TAMM REVDAT 2 18-DEC-19 6OQH 1 REMARK REVDAT 1 05-JUN-19 6OQH 0 JRNL AUTH R.R.SANGANNA GARI,P.SEELHEIM,B.LIANG,L.K.TAMM JRNL TITL QUIET OUTER MEMBRANE PROTEIN G (OMPG) NANOPORE FOR JRNL TITL 2 BIOSENSING. JRNL REF ACS SENS V. 4 1230 2019 JRNL REFN ISSN 2379-3694 JRNL PMID 30990011 JRNL DOI 10.1021/ACSSENSORS.8B01645 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000241121. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N; U-2H] OMPG REMARK 210 DELTA-L6-D215 MUTANT, 200 MM DPC, REMARK 210 25 MM BIS-TRIS, 50 MM SODIUM REMARK 210 CHLORIDE, 0.05 % W/V SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCACB; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D 15N-1H-1H NOESY- REMARK 210 TROSY; 3D 15N-1H-15N HSQC-NOESY- REMARK 210 HSQC; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 5 -60.59 -165.72 REMARK 500 1 TRP A 6 103.87 60.85 REMARK 500 1 ILE A 16 -71.35 67.01 REMARK 500 1 GLU A 17 168.36 57.18 REMARK 500 1 VAL A 19 -60.27 -142.15 REMARK 500 1 ASP A 25 34.15 -168.94 REMARK 500 1 TYR A 57 30.00 -161.24 REMARK 500 1 SER A 58 76.78 58.91 REMARK 500 1 ALA A 59 -70.85 -78.41 REMARK 500 1 LEU A 78 162.66 60.17 REMARK 500 1 GLU A 79 -58.86 -160.85 REMARK 500 1 VAL A 99 35.01 -98.54 REMARK 500 1 GLU A 101 87.66 -153.41 REMARK 500 1 PHE A 137 -69.54 177.63 REMARK 500 1 ASP A 140 81.31 61.27 REMARK 500 1 TYR A 146 -79.87 -116.14 REMARK 500 1 ASP A 148 -46.13 -177.83 REMARK 500 1 PHE A 161 -63.59 -91.66 REMARK 500 1 PHE A 177 149.46 -172.38 REMARK 500 1 ASP A 180 103.63 -175.36 REMARK 500 1 SER A 182 94.56 -66.96 REMARK 500 1 ASN A 203 30.84 -98.58 REMARK 500 1 ARG A 215 26.00 -140.38 REMARK 500 1 SER A 217 145.57 66.62 REMARK 500 1 PHE A 224 168.25 60.95 REMARK 500 1 ASN A 225 -67.82 -92.62 REMARK 500 1 GLN A 236 26.23 -149.35 REMARK 500 1 ASN A 237 -75.90 64.74 REMARK 500 1 PHE A 247 31.55 -158.36 REMARK 500 1 TRP A 249 162.19 59.98 REMARK 500 1 ASP A 256 36.02 -173.14 REMARK 500 1 SER A 257 -44.20 -166.08 REMARK 500 2 ARG A 3 -53.75 -154.87 REMARK 500 2 ASN A 4 159.88 60.87 REMARK 500 2 ASP A 5 -60.74 -170.40 REMARK 500 2 GLU A 20 100.28 60.51 REMARK 500 2 ASP A 25 -63.22 -153.21 REMARK 500 2 PRO A 32 178.80 -55.72 REMARK 500 2 ASN A 40 120.52 -174.19 REMARK 500 2 ASP A 56 174.75 -59.60 REMARK 500 2 TYR A 57 -41.51 -173.79 REMARK 500 2 SER A 58 -59.05 -135.52 REMARK 500 2 LEU A 78 98.69 58.65 REMARK 500 2 VAL A 99 -50.77 -127.70 REMARK 500 2 LYS A 104 -39.61 -176.38 REMARK 500 2 ASP A 140 -39.94 -177.49 REMARK 500 2 ASN A 162 -165.15 -176.53 REMARK 500 2 ASP A 180 -74.41 -54.99 REMARK 500 2 ASP A 181 37.31 -169.90 REMARK 500 2 SER A 182 121.92 63.11 REMARK 500 REMARK 500 THIS ENTRY HAS 313 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JQY RELATED DB: PDB REMARK 900 WILDTYPE REMARK 900 RELATED ID: 30604 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF A QUIET OUTER MEMBRANE PROTEIN G NANOPORE REMARK 900 (OMPG MUTANT: DELTA-L6-D215) DBREF 6OQH A 1 271 UNP P76045 OMPG_ECOLI 22 301 SEQADV 6OQH A UNP P76045 ASP 236 DELETION SEQADV 6OQH A UNP P76045 TRP 241 DELETION SEQADV 6OQH A UNP P76045 ASP 242 DELETION SEQADV 6OQH A UNP P76045 TRP 243 DELETION SEQADV 6OQH A UNP P76045 GLN 244 DELETION SEQADV 6OQH A UNP P76045 ASP 245 DELETION SEQADV 6OQH A UNP P76045 ASP 246 DELETION SEQADV 6OQH A UNP P76045 ILE 247 DELETION SEQADV 6OQH A UNP P76045 GLU 248 DELETION SEQADV 6OQH GLY A 219 UNP P76045 ARG 249 CONFLICT SEQRES 1 A 271 GLU GLU ARG ASN ASP TRP HIS PHE ASN ILE GLY ALA MET SEQRES 2 A 271 TYR GLU ILE GLU ASN VAL GLU GLY TYR GLY GLU ASP MET SEQRES 3 A 271 ASP GLY LEU ALA GLU PRO SER VAL TYR PHE ASN ALA ALA SEQRES 4 A 271 ASN GLY PRO TRP ARG ILE ALA LEU ALA TYR TYR GLN GLU SEQRES 5 A 271 GLY PRO VAL ASP TYR SER ALA GLY LYS ARG GLY THR TRP SEQRES 6 A 271 PHE ASP ARG PRO GLU LEU GLU VAL HIS TYR GLN PHE LEU SEQRES 7 A 271 GLU ASN ASP ASP PHE SER PHE GLY LEU THR GLY GLY PHE SEQRES 8 A 271 ARG ASN TYR GLY TYR HIS TYR VAL ASP GLU PRO GLY LYS SEQRES 9 A 271 ASP THR ALA ASN MET GLN ARG TRP LYS ILE ALA PRO ASP SEQRES 10 A 271 TRP ASP VAL LYS LEU THR ASP ASP LEU ARG PHE ASN GLY SEQRES 11 A 271 TRP LEU SER MET TYR LYS PHE ALA ASN ASP LEU ASN THR SEQRES 12 A 271 THR GLY TYR ALA ASP THR ARG VAL GLU THR GLU THR GLY SEQRES 13 A 271 LEU GLN TYR THR PHE ASN GLU THR VAL ALA LEU ARG VAL SEQRES 14 A 271 ASN TYR TYR LEU GLU ARG GLY PHE ASN MET ASP ASP SER SEQRES 15 A 271 ARG ASN ASN GLY GLU PHE SER THR GLN GLU ILE ARG ALA SEQRES 16 A 271 TYR LEU PRO LEU THR LEU GLY ASN HIS SER VAL THR PRO SEQRES 17 A 271 TYR THR ARG ILE GLY LEU ARG TRP SER ASN GLY GLU GLY SEQRES 18 A 271 HIS ASP PHE ASN ARG VAL GLY LEU PHE TYR GLY TYR ASP SEQRES 19 A 271 PHE GLN ASN GLY LEU SER VAL SER LEU GLU TYR ALA PHE SEQRES 20 A 271 GLU TRP GLN ASP HIS ASP GLU GLY ASP SER ASP LYS PHE SEQRES 21 A 271 HIS TYR ALA GLY VAL GLY VAL ASN TYR SER PHE HELIX 1 AA1 ASN A 142 TYR A 146 5 5 SHEET 1 AA1 9 LEU A 199 LEU A 201 0 SHEET 2 AA1 9 HIS A 204 THR A 210 -1 O VAL A 206 N LEU A 199 SHEET 3 AA1 9 PHE A 188 TYR A 196 -1 N ALA A 195 O THR A 210 SHEET 4 AA1 9 VAL A 165 GLY A 176 -1 N TYR A 172 O GLU A 192 SHEET 5 AA1 9 THR A 153 ASN A 162 -1 N LEU A 157 O VAL A 169 SHEET 6 AA1 9 LEU A 126 TRP A 131 -1 N ASN A 129 O GLY A 156 SHEET 7 AA1 9 GLN A 110 THR A 123 -1 N VAL A 120 O PHE A 128 SHEET 8 AA1 9 PHE A 83 ASN A 93 -1 N GLY A 90 O LYS A 113 SHEET 9 AA1 9 VAL A 73 GLN A 76 -1 N TYR A 75 O LEU A 87 SHEET 1 AA213 ARG A 150 VAL A 151 0 SHEET 2 AA213 MET A 134 PHE A 137 -1 N TYR A 135 O ARG A 150 SHEET 3 AA213 GLN A 110 THR A 123 -1 N ILE A 114 O MET A 134 SHEET 4 AA213 PHE A 83 ASN A 93 -1 N GLY A 90 O LYS A 113 SHEET 5 AA213 GLU A 70 LEU A 71 -1 N LEU A 71 O PHE A 91 SHEET 6 AA213 TRP A 43 TYR A 49 -1 N ALA A 48 O GLU A 70 SHEET 7 AA213 SER A 33 ASN A 40 -1 N PHE A 36 O LEU A 47 SHEET 8 AA213 HIS A 7 TYR A 14 -1 N ASN A 9 O ASN A 37 SHEET 9 AA213 ALA A 263 PHE A 271 -1 O VAL A 265 N TYR A 14 SHEET 10 AA213 SER A 240 TYR A 245 -1 N SER A 240 O ASN A 268 SHEET 11 AA213 ARG A 226 TYR A 233 -1 N TYR A 231 O LEU A 243 SHEET 12 AA213 HIS A 204 THR A 210 -1 N SER A 205 O GLY A 232 SHEET 13 AA213 LEU A 199 LEU A 201 -1 N LEU A 199 O VAL A 206 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1