HEADER PROTEIN BINDING 26-APR-19 6OQK TITLE SOLUTION STRUCTURE OF THE COMPLEX OF MUTANT VEK50[RH2/AA] AND TITLE 2 PLASMINOGEN KRINGLE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN KRINGLE 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PLASMINOGEN-BINDING GROUP A STREPTOCOCCAL M-LIKE PROTEIN COMPND 7 PAM; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 9 ORGANISM_TAXID: 1314; SOURCE 10 GENE: PAM, EMM; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PLASMINOGEN BINDING PEPTIDE, BLOOD CLOTTING, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.YUAN,F.J.CASTELLINO REVDAT 5 15-MAY-24 6OQK 1 REMARK REVDAT 4 14-JUN-23 6OQK 1 REMARK REVDAT 3 18-DEC-19 6OQK 1 REMARK REVDAT 2 02-OCT-19 6OQK 1 JRNL REMARK REVDAT 1 24-JUL-19 6OQK 0 JRNL AUTH Y.YUAN,Y.A.AYINUOLA,D.SINGH,O.AYINUOLA,J.A.MAYFIELD,A.QUEK, JRNL AUTH 2 J.C.WHISSTOCK,R.H.P.LAW,S.W.LEE,V.A.PLOPLIS,F.J.CASTELLINO JRNL TITL SOLUTION STRUCTURAL MODEL OF THE COMPLEX OF THE BINDING JRNL TITL 2 REGIONS OF HUMAN PLASMINOGEN WITH ITS M-PROTEIN RECEPTOR JRNL TITL 3 FROM STREPTOCOCCUS PYOGENES. JRNL REF J.STRUCT.BIOL. V. 208 18 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31301349 JRNL DOI 10.1016/J.JSB.2019.07.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, HADDOCK REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000241019. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 PLASMINOGEN KRINGLE 2, 1.0 MM REMARK 210 VEK50[RH2/AA], 20 MM [U-2H] BIS- REMARK 210 TRIS-D19, 2 UG/ML DSS, 2 UG/ML REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 VEK50[RH2/AA], 1.0 MM REMARK 210 PLASMINOGEN KRINGLE 2, 20 MM [U- REMARK 210 2H] BIS-TRIS-D19, 2 UG/ML DSS, 2 REMARK 210 UG/ML SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H TOCSY; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CS-ROSETTA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H2 TYR A 1 OE2 GLU A 7 1.58 REMARK 500 OD1 ASP A 63 HZ1 LYS B 116 1.58 REMARK 500 OE2 GLU B 126 HZ1 LYS B 129 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 119.53 -161.97 REMARK 500 1 GLU A 6 60.78 -116.76 REMARK 500 1 LYS A 19 53.37 -94.48 REMARK 500 1 PRO A 37 -33.99 -38.83 REMARK 500 1 PHE A 47 57.28 -146.89 REMARK 500 1 LYS A 54 -114.38 52.62 REMARK 500 1 ASN A 55 34.76 -148.40 REMARK 500 1 THR A 71 32.76 -83.32 REMARK 500 1 PRO A 73 -19.17 -48.67 REMARK 500 1 ALA B 140 -72.85 -87.49 REMARK 500 1 GLU B 141 -81.80 -108.29 REMARK 500 1 LEU B 149 -114.84 58.47 REMARK 500 2 LYS A 19 48.75 -86.68 REMARK 500 2 THR A 23 -167.25 -101.51 REMARK 500 2 PRO A 37 -35.31 -35.48 REMARK 500 2 LYS A 54 -113.58 54.53 REMARK 500 2 ASN A 55 34.65 -151.94 REMARK 500 2 ASP A 63 -165.61 -78.03 REMARK 500 2 THR A 71 37.80 -82.16 REMARK 500 3 GLU A 6 34.52 -143.96 REMARK 500 3 LYS A 19 47.43 -93.67 REMARK 500 3 LYS A 54 -119.53 56.27 REMARK 500 3 ASN A 55 34.09 -148.88 REMARK 500 3 ASP A 63 -162.54 -71.24 REMARK 500 3 THR A 71 27.32 -78.31 REMARK 500 3 LEU B 149 96.30 -59.23 REMARK 500 3 ALA B 150 99.67 -163.88 REMARK 500 4 LYS A 54 -112.13 48.04 REMARK 500 4 ASN A 55 32.15 -143.78 REMARK 500 4 ASP A 63 -163.65 -72.05 REMARK 500 4 THR A 71 31.88 -81.44 REMARK 500 4 PRO A 73 -9.51 -55.62 REMARK 500 4 GLU B 141 -83.18 -97.14 REMARK 500 4 LYS B 143 -73.80 -52.71 REMARK 500 5 SER A 5 69.35 -156.38 REMARK 500 5 LYS A 54 -111.59 54.09 REMARK 500 5 ASN A 55 36.55 -150.05 REMARK 500 5 ARG A 62 31.31 75.58 REMARK 500 5 ASP A 63 -164.70 -70.81 REMARK 500 5 THR A 71 31.08 -77.25 REMARK 500 5 LYS B 143 -62.79 72.38 REMARK 500 6 LYS A 19 34.49 -90.43 REMARK 500 6 LYS A 54 -107.60 50.74 REMARK 500 6 ASN A 55 36.42 -152.37 REMARK 500 6 ASP A 63 -157.90 -84.00 REMARK 500 6 SER B 102 14.61 -146.68 REMARK 500 6 VAL B 103 -33.70 -135.90 REMARK 500 6 GLU B 141 -9.91 -44.77 REMARK 500 6 ARG B 142 -17.32 -49.05 REMARK 500 6 LYS B 143 36.34 -83.90 REMARK 500 REMARK 500 THIS ENTRY HAS 84 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30606 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE COMPLEX OF MUTANT VEK50[RH2/AA] AND REMARK 900 PLASMINOGEN KRINGLE 2 DBREF 6OQK A 1 87 PDB 6OQK 6OQK 1 87 DBREF 6OQK B 103 151 UNP P49054 PAM_STRPY 85 133 SEQADV 6OQK GLY B 101 UNP P49054 EXPRESSION TAG SEQADV 6OQK SER B 102 UNP P49054 EXPRESSION TAG SEQADV 6OQK ALA B 132 UNP P49054 ARG 114 ENGINEERED MUTATION SEQADV 6OQK ALA B 133 UNP P49054 HIS 115 ENGINEERED MUTATION SEQADV 6OQK TYR B 152 UNP P49054 EXPRESSION TAG SEQRES 1 A 87 TYR VAL GLU PHE SER GLU GLU CYS MET HIS GLY SER GLY SEQRES 2 A 87 GLU ASN TYR ASP GLY LYS ILE SER LYS THR MET SER GLY SEQRES 3 A 87 LEU GLU CYS GLN ALA TRP ASP SER GLN SER PRO HIS ALA SEQRES 4 A 87 HIS GLY TYR ILE PRO SER LYS PHE PRO ASN LYS ASN LEU SEQRES 5 A 87 LYS LYS ASN TYR CYS ARG ASN PRO ASP ARG ASP LEU ARG SEQRES 6 A 87 PRO TRP CYS PHE THR THR ASP PRO ASN LYS ARG TRP GLU SEQRES 7 A 87 TYR CYS ASP ILE PRO ARG CYS ALA ALA SEQRES 1 B 52 GLY SER VAL GLU LYS LEU THR ALA ASP ALA GLU LEU GLN SEQRES 2 B 52 ARG LEU LYS ASN GLU ARG HIS GLU GLU ALA GLU LEU GLU SEQRES 3 B 52 ARG LEU LYS SER GLU ALA ALA ASP HIS ASP LYS LYS GLU SEQRES 4 B 52 ALA GLU ARG LYS ALA LEU GLU ASP LYS LEU ALA ASP TYR HELIX 1 AA1 ILE A 43 ASN A 51 5 9 HELIX 2 AA2 THR B 107 ASP B 134 1 28 HELIX 3 AA3 ASP B 134 ALA B 140 1 7 HELIX 4 AA4 ARG B 142 LEU B 149 1 8 SHEET 1 AA1 2 TRP A 67 ASP A 72 0 SHEET 2 AA1 2 LYS A 75 TYR A 79 -1 O ARG A 76 N THR A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1