HEADER TRANSFERASE 29-APR-19 6OR8 TITLE AN UNEXPECTED INTERMEDIATE IN THE REACTION CATALYZED BY QUINOLINATE TITLE 2 SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINOLINATE SYNTHASE A; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.72; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII (STRAIN ATCC 700860 / DSM SOURCE 3 12428 / JCM 9974 / NBRC 100139 / OT-3); SOURCE 4 ORGANISM_TAXID: 70601; SOURCE 5 STRAIN: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3; SOURCE 6 GENE: NADA, PH0013; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOSYNTHESIS OF NICOTINAMIDE ADENINE DINUCLEOTIDE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.ESAKOVA,T.L.GROVE,N.H.YENNAWAR,S.J.BOOKER REVDAT 3 11-OCT-23 6OR8 1 REMARK REVDAT 2 20-NOV-19 6OR8 1 REMARK REVDAT 1 16-OCT-19 6OR8 0 JRNL AUTH O.A.ESAKOVA,A.SILAKOV,T.L.GROVE,D.M.WARUI,N.H.YENNAWAR, JRNL AUTH 2 S.J.BOOKER JRNL TITL AN UNEXPECTED SPECIES DETERMINED BY X-RAY CRYSTALLOGRAPHY JRNL TITL 2 THAT MAY REPRESENT AN INTERMEDIATE IN THE REACTION CATALYZED JRNL TITL 3 BY QUINOLINATE SYNTHASE. JRNL REF J.AM.CHEM.SOC. V. 141 14142 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 31390192 JRNL DOI 10.1021/JACS.9B02513 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6270 - 3.9680 1.00 1989 145 0.1467 0.1805 REMARK 3 2 3.9680 - 3.1497 1.00 1952 146 0.1384 0.1845 REMARK 3 3 3.1497 - 2.7516 1.00 1927 149 0.1617 0.1913 REMARK 3 4 2.7516 - 2.5000 1.00 1929 139 0.1673 0.2072 REMARK 3 5 2.5000 - 2.3208 1.00 1949 144 0.1576 0.2091 REMARK 3 6 2.3208 - 2.1840 1.00 1928 143 0.1579 0.2091 REMARK 3 7 2.1840 - 2.0746 1.00 1918 148 0.1536 0.2308 REMARK 3 8 2.0746 - 1.9843 1.00 1934 143 0.1688 0.2082 REMARK 3 9 1.9843 - 1.9079 1.00 1912 142 0.1735 0.2316 REMARK 3 10 1.9079 - 1.8421 1.00 1920 144 0.1805 0.2012 REMARK 3 11 1.8421 - 1.7845 1.00 1927 152 0.1805 0.2281 REMARK 3 12 1.7845 - 1.7335 1.00 1896 139 0.1805 0.2893 REMARK 3 13 1.7335 - 1.6878 1.00 1930 138 0.1805 0.2865 REMARK 3 14 1.6878 - 1.6500 0.94 1806 133 0.1805 0.2466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2472 REMARK 3 ANGLE : 1.567 3352 REMARK 3 CHIRALITY : 0.062 379 REMARK 3 PLANARITY : 0.007 423 REMARK 3 DIHEDRAL : 12.243 1544 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:11) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8214 -10.4432 84.6068 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.2885 REMARK 3 T33: 0.3588 T12: -0.0036 REMARK 3 T13: -0.0617 T23: 0.0670 REMARK 3 L TENSOR REMARK 3 L11: 8.2315 L22: 6.3832 REMARK 3 L33: 7.9961 L12: 1.1818 REMARK 3 L13: -5.3490 L23: -3.6222 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: -0.4367 S13: -0.6485 REMARK 3 S21: 0.2255 S22: -0.6482 S23: -1.4374 REMARK 3 S31: 0.0246 S32: 1.3288 S33: 0.4283 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 12:23) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6810 -11.6756 78.5611 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.0724 REMARK 3 T33: 0.0894 T12: 0.0264 REMARK 3 T13: 0.0345 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.6996 L22: 1.6403 REMARK 3 L33: 8.8629 L12: 0.3900 REMARK 3 L13: 0.8560 L23: -1.0026 REMARK 3 S TENSOR REMARK 3 S11: -0.0815 S12: -0.1038 S13: -0.0029 REMARK 3 S21: -0.0427 S22: -0.1005 S23: -0.1609 REMARK 3 S31: 0.2215 S32: 0.2720 S33: 0.1509 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 24:48) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2228 -13.8384 72.0323 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.0667 REMARK 3 T33: 0.1077 T12: 0.0213 REMARK 3 T13: 0.0303 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 6.0028 L22: 2.7556 REMARK 3 L33: 4.1312 L12: 1.0553 REMARK 3 L13: -0.1033 L23: 0.5500 REMARK 3 S TENSOR REMARK 3 S11: -0.0993 S12: 0.2947 S13: -0.4470 REMARK 3 S21: -0.0782 S22: 0.1242 S23: -0.2164 REMARK 3 S31: 0.2129 S32: 0.0338 S33: -0.0025 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 49:77) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3704 -8.7481 78.6709 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.0661 REMARK 3 T33: 0.0541 T12: -0.0076 REMARK 3 T13: -0.0036 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 2.1225 L22: 2.8947 REMARK 3 L33: 3.3771 L12: -0.2238 REMARK 3 L13: 0.3410 L23: -1.5563 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.0407 S13: -0.0406 REMARK 3 S21: -0.1820 S22: 0.0687 S23: 0.1612 REMARK 3 S31: 0.3498 S32: -0.2401 S33: -0.0746 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 78:104) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5103 3.2614 65.2481 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: 0.0976 REMARK 3 T33: 0.1159 T12: 0.0005 REMARK 3 T13: -0.0019 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 7.2505 L22: -0.1113 REMARK 3 L33: 1.6327 L12: 0.5143 REMARK 3 L13: 3.9964 L23: 0.3436 REMARK 3 S TENSOR REMARK 3 S11: -0.2300 S12: -0.1471 S13: 0.4525 REMARK 3 S21: -0.0037 S22: -0.0225 S23: 0.0561 REMARK 3 S31: -0.1515 S32: -0.0670 S33: 0.2410 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 105:135) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1203 -8.7151 62.8167 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.1691 REMARK 3 T33: 0.1869 T12: -0.0135 REMARK 3 T13: 0.0015 T23: 0.1075 REMARK 3 L TENSOR REMARK 3 L11: 4.5238 L22: 2.7434 REMARK 3 L33: 5.3583 L12: -0.1765 REMARK 3 L13: 0.6303 L23: 0.3059 REMARK 3 S TENSOR REMARK 3 S11: 0.0615 S12: -0.4553 S13: -0.4751 REMARK 3 S21: 0.0239 S22: -0.1340 S23: -0.2155 REMARK 3 S31: 0.0582 S32: 0.2964 S33: 0.0472 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 136:165) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5428 -5.0317 53.5504 REMARK 3 T TENSOR REMARK 3 T11: 0.0697 T22: 0.0928 REMARK 3 T33: 0.0729 T12: 0.0006 REMARK 3 T13: -0.0004 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 5.2925 L22: 3.8669 REMARK 3 L33: 2.5775 L12: 1.6364 REMARK 3 L13: 0.1563 L23: 1.4223 REMARK 3 S TENSOR REMARK 3 S11: -0.1156 S12: 0.3836 S13: -0.0586 REMARK 3 S21: -0.2423 S22: 0.1080 S23: -0.0767 REMARK 3 S31: -0.0256 S32: 0.1384 S33: 0.0196 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 166:191) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2651 -0.6661 48.8588 REMARK 3 T TENSOR REMARK 3 T11: 0.1286 T22: 0.1036 REMARK 3 T33: 0.1048 T12: -0.0328 REMARK 3 T13: 0.0073 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 5.7623 L22: 2.5100 REMARK 3 L33: 2.9586 L12: -2.8326 REMARK 3 L13: -2.9475 L23: 1.7256 REMARK 3 S TENSOR REMARK 3 S11: 0.2382 S12: 0.2859 S13: 0.5004 REMARK 3 S21: -0.3211 S22: 0.0088 S23: -0.2809 REMARK 3 S31: -0.3083 S32: 0.0222 S33: -0.2151 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 192:229) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7878 -11.0866 50.4555 REMARK 3 T TENSOR REMARK 3 T11: 0.0699 T22: 0.0781 REMARK 3 T33: 0.0568 T12: -0.0245 REMARK 3 T13: -0.0086 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 4.3660 L22: 4.9091 REMARK 3 L33: 2.2497 L12: -2.2381 REMARK 3 L13: 0.2435 L23: 0.2381 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: 0.1200 S13: -0.2852 REMARK 3 S21: -0.1731 S22: -0.0181 S23: 0.2519 REMARK 3 S31: 0.1410 S32: -0.1424 S33: -0.0534 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 230:261) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3075 -7.9021 59.3187 REMARK 3 T TENSOR REMARK 3 T11: 0.0482 T22: 0.0720 REMARK 3 T33: 0.0541 T12: -0.0081 REMARK 3 T13: -0.0147 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.8875 L22: 3.1940 REMARK 3 L33: 3.0534 L12: -0.5939 REMARK 3 L13: -1.1654 L23: 1.7599 REMARK 3 S TENSOR REMARK 3 S11: -0.0826 S12: -0.1487 S13: -0.0079 REMARK 3 S21: 0.1099 S22: 0.0867 S23: -0.0818 REMARK 3 S31: 0.0366 S32: 0.2242 S33: -0.0092 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 262:278) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0691 -2.2000 83.3406 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.0749 REMARK 3 T33: 0.1119 T12: -0.0232 REMARK 3 T13: -0.0445 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 4.1511 L22: 2.8222 REMARK 3 L33: 4.6681 L12: -1.6130 REMARK 3 L13: -1.0120 L23: -0.6651 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.2105 S13: 0.1866 REMARK 3 S21: 0.3641 S22: -0.0284 S23: -0.3122 REMARK 3 S31: -0.1705 S32: 0.3516 S33: -0.0251 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 279:299) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0579 -11.2950 73.0089 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.5331 REMARK 3 T33: 0.3949 T12: -0.0671 REMARK 3 T13: -0.0061 T23: 0.2884 REMARK 3 L TENSOR REMARK 3 L11: 2.6168 L22: 3.4973 REMARK 3 L33: 7.6193 L12: -0.2945 REMARK 3 L13: 0.4605 L23: 3.3649 REMARK 3 S TENSOR REMARK 3 S11: 0.0676 S12: -0.7984 S13: -0.8419 REMARK 3 S21: 0.2748 S22: -0.3605 S23: 0.4047 REMARK 3 S31: 0.5423 S32: -0.3914 S33: 0.1702 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-19. REMARK 100 THE DEPOSITION ID IS D_1000239268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28922 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: 1WZU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 6.5, 12% PEG 20000, 0.2 REMARK 280 MM FAD, 5 MM ASP, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.26350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 721 O HOH A 752 2.05 REMARK 500 O HOH A 659 O HOH A 761 2.10 REMARK 500 O HOH A 641 O HOH A 756 2.12 REMARK 500 O HOH A 652 O HOH A 772 2.14 REMARK 500 O HOH A 725 O HOH A 746 2.15 REMARK 500 O HOH A 734 O HOH A 756 2.18 REMARK 500 O HOH A 749 O HOH A 767 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 138 143.89 -171.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 83 SG REMARK 620 2 SF4 A 401 S1 106.7 REMARK 620 3 SF4 A 401 S3 122.9 101.5 REMARK 620 4 SF4 A 401 S4 114.8 106.0 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 170 SG REMARK 620 2 SF4 A 401 S1 111.0 REMARK 620 3 SF4 A 401 S2 109.9 105.5 REMARK 620 4 SF4 A 401 S3 125.6 101.8 101.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 256 SG REMARK 620 2 SF4 A 401 S2 116.2 REMARK 620 3 SF4 A 401 S3 116.9 100.6 REMARK 620 4 SF4 A 401 S4 115.0 103.6 102.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5XR A 402 OAI REMARK 620 2 SF4 A 401 S1 88.6 REMARK 620 3 SF4 A 401 S2 98.3 103.3 REMARK 620 4 SF4 A 401 S4 153.2 103.4 102.0 REMARK 620 5 5XR A 402 OAJ 51.5 119.9 122.9 102.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5XR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5FFK RELATED DB: PDB REMARK 900 RELATED ID: 5FEV RELATED DB: PDB REMARK 900 RELATED ID: 5FEU RELATED DB: PDB REMARK 900 RELATED ID: 4ZKZ RELATED DB: PDB REMARK 900 RELATED ID: 4ZK6 RELATED DB: PDB DBREF 6OR8 A 1 300 UNP O57767 NADA_PYRHO 1 300 SEQRES 1 A 300 MET ASP LEU VAL GLU GLU ILE LEU ARG LEU LYS GLU GLU SEQRES 2 A 300 ARG ASN ALA ILE ILE LEU ALA HIS ASN TYR GLN LEU PRO SEQRES 3 A 300 GLU VAL GLN ASP ILE ALA ASP PHE ILE GLY ASP SER LEU SEQRES 4 A 300 GLU LEU ALA ARG ARG ALA THR ARG VAL ASP ALA ASP VAL SEQRES 5 A 300 ILE VAL PHE ALA GLY VAL ASP PHE MET ALA GLU THR ALA SEQRES 6 A 300 LYS ILE LEU ASN PRO ASP LYS VAL VAL LEU ILE PRO SER SEQRES 7 A 300 ARG GLU ALA THR CYS ALA MET ALA ASN MET LEU LYS VAL SEQRES 8 A 300 GLU HIS ILE LEU GLU ALA LYS ARG LYS TYR PRO ASN ALA SEQRES 9 A 300 PRO VAL VAL LEU TYR VAL ASN SER THR ALA GLU ALA LYS SEQRES 10 A 300 ALA TYR ALA ASP VAL THR VAL THR SER ALA ASN ALA VAL SEQRES 11 A 300 GLU VAL VAL LYS LYS LEU ASP SER ASP VAL VAL ILE PHE SEQRES 12 A 300 GLY PRO ASP LYS ASN LEU ALA HIS TYR VAL ALA LYS MET SEQRES 13 A 300 THR GLY LYS LYS ILE ILE PRO VAL PRO SER LYS GLY HIS SEQRES 14 A 300 CYS TYR VAL HIS GLN LYS PHE THR LEU ASP ASP VAL GLU SEQRES 15 A 300 ARG ALA LYS LYS LEU HIS PRO ASN ALA LYS LEU MET ILE SEQRES 16 A 300 HIS PRO GLU CYS ILE PRO GLU VAL GLN GLU LYS ALA ASP SEQRES 17 A 300 ILE ILE ALA SER THR GLY GLY MET ILE LYS ARG ALA CYS SEQRES 18 A 300 GLU TRP ASP GLU TRP VAL VAL PHE THR GLU ARG GLU MET SEQRES 19 A 300 VAL TYR ARG LEU ARG LYS LEU TYR PRO GLN LYS LYS PHE SEQRES 20 A 300 TYR PRO ALA ARG GLU ASP ALA PHE CYS ILE GLY MET LYS SEQRES 21 A 300 ALA ILE THR LEU LYS ASN ILE TYR GLU SER LEU LYS ASP SEQRES 22 A 300 MET LYS TYR LYS VAL GLU VAL PRO GLU GLU ILE ALA ARG SEQRES 23 A 300 LYS ALA ARG LYS ALA ILE GLU ARG MET LEU GLU MET SER SEQRES 24 A 300 LYS HET SF4 A 401 8 HET 5XR A 402 15 HET PO4 A 403 5 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM 5XR 2-HYDROXY-N-[(1S)-1-HYDROXY-3-OXOPROPYL]-L-ASPARTIC HETNAM 2 5XR ACID HETNAM PO4 PHOSPHATE ION FORMUL 2 SF4 FE4 S4 FORMUL 3 5XR C7 H11 N O7 FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *285(H2 O) HELIX 1 AA1 ASP A 2 ASN A 15 1 14 HELIX 2 AA2 LEU A 25 ASP A 30 1 6 HELIX 3 AA3 ASP A 37 THR A 46 1 10 HELIX 4 AA4 VAL A 58 ASN A 69 1 12 HELIX 5 AA5 MET A 85 LEU A 89 5 5 HELIX 6 AA6 LYS A 90 TYR A 101 1 12 HELIX 7 AA7 THR A 113 ALA A 118 1 6 HELIX 8 AA8 ASN A 128 LEU A 136 1 9 HELIX 9 AA9 ASP A 146 GLY A 158 1 13 HELIX 10 AB1 CYS A 170 LYS A 175 1 6 HELIX 11 AB2 THR A 177 HIS A 188 1 12 HELIX 12 AB3 ILE A 200 GLU A 205 1 6 HELIX 13 AB4 SER A 212 ALA A 220 1 9 HELIX 14 AB5 CYS A 221 TRP A 223 5 3 HELIX 15 AB6 GLU A 233 TYR A 242 1 10 HELIX 16 AB7 GLY A 258 ILE A 262 5 5 HELIX 17 AB8 THR A 263 MET A 274 1 12 HELIX 18 AB9 PRO A 281 SER A 299 1 19 SHEET 1 AA1 4 PHE A 34 GLY A 36 0 SHEET 2 AA1 4 ALA A 16 HIS A 21 1 N ALA A 20 O PHE A 34 SHEET 3 AA1 4 VAL A 52 ALA A 56 1 O ALA A 56 N LEU A 19 SHEET 4 AA1 4 VAL A 73 LEU A 75 1 O LEU A 75 N ILE A 53 SHEET 1 AA2 4 VAL A 122 VAL A 124 0 SHEET 2 AA2 4 VAL A 106 TYR A 109 1 N LEU A 108 O VAL A 122 SHEET 3 AA2 4 VAL A 140 GLY A 144 1 O ILE A 142 N VAL A 107 SHEET 4 AA2 4 LYS A 160 PRO A 163 1 O LYS A 160 N VAL A 141 SHEET 1 AA3 4 ILE A 209 ILE A 210 0 SHEET 2 AA3 4 LYS A 192 ILE A 195 1 N ILE A 195 O ILE A 209 SHEET 3 AA3 4 GLU A 225 PHE A 229 1 O PHE A 229 N MET A 194 SHEET 4 AA3 4 LYS A 246 PRO A 249 1 O TYR A 248 N VAL A 228 LINK SG CYS A 83 FE2 SF4 A 401 1555 1555 2.33 LINK SG CYS A 170 FE4 SF4 A 401 1555 1555 2.32 LINK SG CYS A 256 FE1 SF4 A 401 1555 1555 2.36 LINK FE3 SF4 A 401 OAI 5XR A 402 1555 1555 2.70 LINK FE3 SF4 A 401 OAJ 5XR A 402 1555 1555 2.28 CISPEP 1 GLY A 144 PRO A 145 0 -0.01 CISPEP 2 VAL A 164 PRO A 165 0 -9.34 CISPEP 3 LYS A 275 TYR A 276 0 -4.77 SITE 1 AC1 6 CYS A 83 ALA A 84 CYS A 170 GLU A 198 SITE 2 AC1 6 CYS A 256 5XR A 402 SITE 1 AC2 17 HIS A 21 TYR A 23 ASP A 37 SER A 38 SITE 2 AC2 17 MET A 61 TYR A 109 ASN A 111 HIS A 173 SITE 3 AC2 17 HIS A 196 GLU A 198 SER A 212 THR A 213 SITE 4 AC2 17 SF4 A 401 HOH A 504 HOH A 543 HOH A 611 SITE 5 AC2 17 HOH A 650 SITE 1 AC3 6 LYS A 186 TYR A 276 LYS A 277 HOH A 518 SITE 2 AC3 6 HOH A 540 HOH A 672 CRYST1 47.393 52.527 53.393 90.00 114.39 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021100 0.000000 0.009568 0.00000 SCALE2 0.000000 0.019038 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020565 0.00000