HEADER TRANSFERASE/DNA 04-MAY-19 6OUN TITLE STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH DSDNA TITLE 2 AND (-)3TC-TP COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EXORIBONUCLEASE H, P66 RT; COMPND 5 EC: 2.7.7.49, 2.7.7.7, 3.1.26.13; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: P51 RT; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA PRIMER 20-MER; COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA TEMPLATE 27-MER; COMPND 19 CHAIN: T; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE B (ISOLATE BH10); SOURCE 4 ORGANISM_COMMON: HIV-1; SOURCE 5 ORGANISM_TAXID: 11678; SOURCE 6 GENE: GAG-POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 11 SUBTYPE B (ISOLATE BH10); SOURCE 12 ORGANISM_COMMON: HIV-1; SOURCE 13 ORGANISM_TAXID: 11678; SOURCE 14 STRAIN: ISOLATE BH10; SOURCE 15 VARIANT: ISOLATE BH10; SOURCE 16 GENE: GAG-POL; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630; SOURCE 23 MOL_ID: 4; SOURCE 24 SYNTHETIC: YES; SOURCE 25 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 26 ORGANISM_TAXID: 32630 KEYWDS REVERSE TRANSCRIPTASE, TERNARY COMPLEX, (-)3TC-TP, CHAIN TERMINATOR, KEYWDS 2 LAMIVUDINE, STEREOCHEMISTRY, TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.BERTOLETTI,K.S.ANDERSON REVDAT 5 11-OCT-23 6OUN 1 REMARK REVDAT 4 01-JAN-20 6OUN 1 REMARK REVDAT 3 28-AUG-19 6OUN 1 JRNL REVDAT 2 21-AUG-19 6OUN 1 JRNL REVDAT 1 24-JUL-19 6OUN 0 JRNL AUTH N.BERTOLETTI,A.H.CHAN,R.F.SCHINAZI,Y.W.YIN,K.S.ANDERSON JRNL TITL STRUCTURAL INSIGHTS INTO THE RECOGNITION OF NUCLEOSIDE JRNL TITL 2 REVERSE TRANSCRIPTASE INHIBITORS BY HIV-1 REVERSE JRNL TITL 3 TRANSCRIPTASE: FIRST CRYSTAL STRUCTURES WITH REVERSE JRNL TITL 4 TRANSCRIPTASE AND THE ACTIVE TRIPHOSPHATE FORMS OF JRNL TITL 5 LAMIVUDINE AND EMTRICITABINE. JRNL REF PROTEIN SCI. V. 28 1664 2019 JRNL REFN ESSN 1469-896X JRNL PMID 31301259 JRNL DOI 10.1002/PRO.3681 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5730 - 6.6692 1.00 2766 145 0.1931 0.2414 REMARK 3 2 6.6692 - 5.3035 1.00 2677 141 0.2121 0.2725 REMARK 3 3 5.3035 - 4.6360 1.00 2651 140 0.1750 0.2009 REMARK 3 4 4.6360 - 4.2135 1.00 2639 139 0.1671 0.2451 REMARK 3 5 4.2135 - 3.9122 1.00 2626 138 0.1747 0.1988 REMARK 3 6 3.9122 - 3.6820 1.00 2621 138 0.2014 0.2607 REMARK 3 7 3.6820 - 3.4979 1.00 2625 138 0.2131 0.2687 REMARK 3 8 3.4979 - 3.3458 1.00 2600 137 0.2292 0.3009 REMARK 3 9 3.3458 - 3.2172 1.00 2597 137 0.2335 0.2619 REMARK 3 10 3.2172 - 3.1063 1.00 2602 137 0.2451 0.2849 REMARK 3 11 3.1063 - 3.0093 1.00 2582 136 0.2754 0.3531 REMARK 3 12 3.0093 - 2.9233 1.00 2600 137 0.2814 0.3357 REMARK 3 13 2.9233 - 2.8464 1.00 2592 137 0.2982 0.3948 REMARK 3 14 2.8464 - 2.7770 1.00 2588 136 0.3029 0.3650 REMARK 3 15 2.7770 - 2.7140 0.99 2548 134 0.3040 0.3738 REMARK 3 16 2.7140 - 2.6562 0.99 2567 135 0.3050 0.3787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 8514 REMARK 3 ANGLE : 0.763 11812 REMARK 3 CHIRALITY : 0.047 1321 REMARK 3 PLANARITY : 0.005 1353 REMARK 3 DIHEDRAL : 15.314 4868 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 805 THROUGH 814 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2265 37.8836 -37.9968 REMARK 3 T TENSOR REMARK 3 T11: 0.6303 T22: 0.5936 REMARK 3 T33: 0.8997 T12: -0.0115 REMARK 3 T13: 0.0421 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 7.3806 L22: 5.8441 REMARK 3 L33: 5.3614 L12: 0.0693 REMARK 3 L13: 0.5416 L23: 0.2248 REMARK 3 S TENSOR REMARK 3 S11: -0.2675 S12: 0.2645 S13: 0.0705 REMARK 3 S21: 0.2426 S22: -0.4431 S23: 1.8529 REMARK 3 S31: 0.6333 S32: -0.1255 S33: 0.5910 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 815 THROUGH 821 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0143 17.2161 -36.8216 REMARK 3 T TENSOR REMARK 3 T11: 1.0040 T22: 0.7770 REMARK 3 T33: 0.9350 T12: 0.0316 REMARK 3 T13: -0.0106 T23: -0.0865 REMARK 3 L TENSOR REMARK 3 L11: 7.3534 L22: 2.1237 REMARK 3 L33: 9.6281 L12: -3.7013 REMARK 3 L13: 2.2891 L23: -1.5646 REMARK 3 S TENSOR REMARK 3 S11: 0.4939 S12: 1.7011 S13: -0.0567 REMARK 3 S21: 0.0014 S22: -0.7443 S23: 0.9486 REMARK 3 S31: 0.2443 S32: 0.3899 S33: 0.2555 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 704 THROUGH 708 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0776 7.2070 -32.9212 REMARK 3 T TENSOR REMARK 3 T11: 0.9791 T22: 0.7810 REMARK 3 T33: 0.7855 T12: -0.0471 REMARK 3 T13: -0.1190 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 2.1611 L22: 9.8611 REMARK 3 L33: 8.4868 L12: 0.9474 REMARK 3 L13: -2.4880 L23: 5.9990 REMARK 3 S TENSOR REMARK 3 S11: 0.8415 S12: 0.7146 S13: 0.1487 REMARK 3 S21: -1.7447 S22: -0.7683 S23: -0.8384 REMARK 3 S31: -0.3285 S32: -1.1788 S33: 0.1122 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 709 THROUGH 725 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7162 35.7029 -37.5765 REMARK 3 T TENSOR REMARK 3 T11: 0.9712 T22: 0.8123 REMARK 3 T33: 0.8782 T12: 0.0443 REMARK 3 T13: 0.0315 T23: 0.0789 REMARK 3 L TENSOR REMARK 3 L11: 6.3421 L22: 6.7224 REMARK 3 L33: 2.1104 L12: -5.2965 REMARK 3 L13: 3.6750 L23: -3.0319 REMARK 3 S TENSOR REMARK 3 S11: -0.1858 S12: 0.4829 S13: -0.3051 REMARK 3 S21: 0.7518 S22: 0.1014 S23: 1.0699 REMARK 3 S31: 0.0623 S32: -0.0658 S33: 0.1392 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5631 2.1353 -22.8274 REMARK 3 T TENSOR REMARK 3 T11: 0.8497 T22: 0.5504 REMARK 3 T33: 0.5903 T12: -0.0019 REMARK 3 T13: 0.0147 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 1.5547 L22: 3.2653 REMARK 3 L33: 1.9875 L12: -0.1119 REMARK 3 L13: 0.1562 L23: -0.0815 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: 0.1538 S13: -0.3855 REMARK 3 S21: -0.2660 S22: -0.0015 S23: -0.0062 REMARK 3 S31: 0.5891 S32: -0.0838 S33: -0.0490 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1487 31.2906 -34.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.6508 T22: 0.6374 REMARK 3 T33: 0.5291 T12: -0.0080 REMARK 3 T13: 0.1128 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 0.7712 L22: 4.5502 REMARK 3 L33: 1.6854 L12: -0.2507 REMARK 3 L13: 0.3642 L23: -0.2848 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: 0.3985 S13: 0.2490 REMARK 3 S21: -0.7868 S22: -0.1161 S23: -0.3078 REMARK 3 S31: 0.1637 S32: 0.1579 S33: 0.1288 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 383 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7492 52.1981 -28.8885 REMARK 3 T TENSOR REMARK 3 T11: 0.5892 T22: 0.5441 REMARK 3 T33: 0.6424 T12: -0.0262 REMARK 3 T13: 0.1480 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 1.7536 L22: 2.9115 REMARK 3 L33: 2.6566 L12: -1.0176 REMARK 3 L13: 1.5123 L23: -1.1124 REMARK 3 S TENSOR REMARK 3 S11: -0.1043 S12: 0.0000 S13: 0.4278 REMARK 3 S21: -0.2043 S22: -0.1217 S23: -0.6829 REMARK 3 S31: -0.1920 S32: 0.2356 S33: 0.2223 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 452 THROUGH 555 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8785 59.8050 -43.6751 REMARK 3 T TENSOR REMARK 3 T11: 0.7817 T22: 0.5353 REMARK 3 T33: 0.6270 T12: -0.0142 REMARK 3 T13: 0.0527 T23: 0.1042 REMARK 3 L TENSOR REMARK 3 L11: 3.8482 L22: 5.3530 REMARK 3 L33: 2.3936 L12: -0.2363 REMARK 3 L13: 0.1897 L23: -0.8583 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: 0.3678 S13: 0.3120 REMARK 3 S21: -0.7662 S22: -0.0466 S23: -0.0014 REMARK 3 S31: -0.0448 S32: 0.0803 S33: 0.0648 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0764 23.0341 -3.6467 REMARK 3 T TENSOR REMARK 3 T11: 0.6797 T22: 0.6279 REMARK 3 T33: 0.5316 T12: 0.0050 REMARK 3 T13: 0.0121 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 1.7098 L22: 2.9484 REMARK 3 L33: 1.6540 L12: -1.9061 REMARK 3 L13: -1.5511 L23: 1.6942 REMARK 3 S TENSOR REMARK 3 S11: -0.0460 S12: -0.1796 S13: -0.2681 REMARK 3 S21: 0.2343 S22: -0.0478 S23: 0.1556 REMARK 3 S31: 0.1825 S32: -0.1701 S33: 0.1382 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 175 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4959 39.2423 11.7315 REMARK 3 T TENSOR REMARK 3 T11: 0.7825 T22: 1.0529 REMARK 3 T33: 0.6746 T12: -0.0697 REMARK 3 T13: 0.0991 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 5.7232 L22: 7.7677 REMARK 3 L33: 7.9825 L12: -0.7359 REMARK 3 L13: 1.5025 L23: 1.3691 REMARK 3 S TENSOR REMARK 3 S11: 0.0296 S12: -1.2461 S13: -0.3720 REMARK 3 S21: 0.3578 S22: -0.0977 S23: 0.0331 REMARK 3 S31: -0.4371 S32: -0.1263 S33: -0.1042 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 209 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7346 61.3784 -19.0172 REMARK 3 T TENSOR REMARK 3 T11: 0.6923 T22: 0.6647 REMARK 3 T33: 0.7091 T12: 0.0048 REMARK 3 T13: 0.0636 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.4470 L22: 3.7213 REMARK 3 L33: 1.8642 L12: 0.5495 REMARK 3 L13: -0.7567 L23: -2.5143 REMARK 3 S TENSOR REMARK 3 S11: 0.1615 S12: -0.2410 S13: 0.2486 REMARK 3 S21: 0.5412 S22: 0.1419 S23: 0.3834 REMARK 3 S31: -0.4550 S32: -0.2846 S33: -0.3228 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 336 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6872 44.9416 -14.0886 REMARK 3 T TENSOR REMARK 3 T11: 0.5463 T22: 0.5536 REMARK 3 T33: 0.4974 T12: 0.0251 REMARK 3 T13: -0.0029 T23: -0.0846 REMARK 3 L TENSOR REMARK 3 L11: 7.3736 L22: 5.1173 REMARK 3 L33: 2.8940 L12: -0.3205 REMARK 3 L13: -0.5556 L23: -1.6581 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: 0.1421 S13: 0.2416 REMARK 3 S21: -0.1243 S22: 0.0172 S23: -0.3699 REMARK 3 S31: -0.0220 S32: 0.1617 S33: 0.0277 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.656 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 26.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 19.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 28.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.48000 REMARK 200 FOR SHELL : 1.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KJV REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3-6% (W/V) PEG 8000, 15 MM MAGNESIUM REMARK 280 SULFATE, AND 50 MM MES ADJUSTED AT PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.94250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.94250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 83.50550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.89200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 83.50550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.89200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.94250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 83.50550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.89200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.94250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 83.50550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 85.89200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 133 REMARK 465 SER A 134 REMARK 465 ILE A 135 REMARK 465 ASN A 136 REMARK 465 ASN A 137 REMARK 465 GLU A 138 REMARK 465 THR A 139 REMARK 465 PRO A 140 REMARK 465 GLY A 141 REMARK 465 ILE A 556 REMARK 465 ARG A 557 REMARK 465 LYS A 558 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 ILE B 5 REMARK 465 TRP B 88 REMARK 465 GLU B 89 REMARK 465 VAL B 90 REMARK 465 GLN B 91 REMARK 465 LEU B 92 REMARK 465 GLY B 93 REMARK 465 ILE B 94 REMARK 465 PRO B 95 REMARK 465 GLY B 213 REMARK 465 LEU B 214 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 465 GLY B 231 REMARK 465 TYR B 232 REMARK 465 LYS B 431 REMARK 465 GLU B 432 REMARK 465 PRO B 433 REMARK 465 ILE B 434 REMARK 465 VAL B 435 REMARK 465 GLY B 436 REMARK 465 ALA B 437 REMARK 465 GLU B 438 REMARK 465 THR B 439 REMARK 465 PHE B 440 REMARK 465 DA P 802 REMARK 465 DC P 803 REMARK 465 DA P 804 REMARK 465 DA T 701 REMARK 465 DT T 702 REMARK 465 DG T 703 REMARK 465 DT T 726 REMARK 465 DG T 727 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 TRP A 24 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 24 CZ3 CH2 REMARK 470 GLU A 28 CG CD OE1 OE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ILE A 50 CG1 CG2 CD1 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 ASN A 54 CG OD1 ND2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 SER A 68 OG REMARK 470 THR A 69 OG1 CG2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 LYS A 104 CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 ILE A 142 CG1 CG2 CD1 REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 275 CE NZ REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 ILE A 293 CG1 CG2 CD1 REMARK 470 LEU A 295 CG CD1 CD2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 LEU A 301 CG CD1 CD2 REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 GLU A 344 CG CD OE1 OE2 REMARK 470 LYS A 347 CE NZ REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 LYS A 388 CE NZ REMARK 470 GLU A 396 CG CD OE1 OE2 REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 LYS A 431 CE NZ REMARK 470 GLU A 449 CG CD OE1 OE2 REMARK 470 THR A 450 OG1 CG2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 LEU A 452 CG CD1 CD2 REMARK 470 LYS A 454 CG CD CE NZ REMARK 470 LYS A 476 CE NZ REMARK 470 GLU A 523 CG CD OE1 OE2 REMARK 470 LYS A 527 CG CD CE NZ REMARK 470 LYS A 550 CG CD CE NZ REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLN B 174 CG CD OE1 NE2 REMARK 470 ASP B 177 CG OD1 OD2 REMARK 470 GLU B 194 CG CD OE1 OE2 REMARK 470 ILE B 195 CG1 CG2 CD1 REMARK 470 ARG B 199 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 211 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 GLU B 248 CG CD OE1 OE2 REMARK 470 LYS B 259 CE NZ REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 ARG B 277 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 GLU B 298 CG CD OE1 OE2 REMARK 470 ARG B 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 LYS B 311 CG CD CE NZ REMARK 470 GLU B 344 CG CD OE1 OE2 REMARK 470 LYS B 347 CG CD CE NZ REMARK 470 LYS B 353 CD CE NZ REMARK 470 ARG B 356 CG CD NE CZ NH1 NH2 REMARK 470 MET B 357 CG SD CE REMARK 470 ARG B 358 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 361 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 374 CD CE NZ REMARK 470 GLN B 407 CG CD OE1 NE2 REMARK 470 GLN B 428 CD OE1 NE2 REMARK 470 GLU B 430 CG CD OE1 OE2 REMARK 470 DG P 805 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC P 821 O3' DDG P 822 P -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 68 7.97 -69.60 REMARK 500 TYR A 183 78.96 -104.99 REMARK 500 MET A 184 -30.16 71.00 REMARK 500 ASP A 185 -13.99 -155.85 REMARK 500 LEU A 282 2.15 -62.42 REMARK 500 PHE A 346 -1.07 69.72 REMARK 500 ALA A 355 32.02 -141.19 REMARK 500 PRO A 412 -179.11 -66.56 REMARK 500 LYS A 451 -0.33 70.14 REMARK 500 SER A 553 76.77 -101.08 REMARK 500 PHE B 346 -3.91 70.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 183 MET B 184 -143.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD2 REMARK 620 2 VAL A 111 O 92.2 REMARK 620 3 ASP A 185 OD2 95.2 108.4 REMARK 620 4 1RZ A 604 O3A 129.9 116.9 110.9 REMARK 620 5 1RZ A 604 O3G 64.6 83.9 157.2 78.3 REMARK 620 6 1RZ A 604 O1B 76.6 151.6 98.7 58.2 67.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD1 REMARK 620 2 GLU A 478 OE2 84.8 REMARK 620 3 ASP A 498 OD1 89.9 91.3 REMARK 620 4 ASP A 498 OD2 91.2 148.7 57.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1RZ A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 P 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 T 801 DBREF 6OUN A 1 558 UNP P03366 POL_HV1B1 600 1157 DBREF 6OUN B 1 440 UNP P03366 POL_HV1B1 600 1039 DBREF 6OUN P 802 822 PDB 6OUN 6OUN 802 822 DBREF 6OUN T 701 727 PDB 6OUN 6OUN 701 727 SEQADV 6OUN ARG A 172 UNP P03366 LYS 771 CONFLICT SEQADV 6OUN CYS A 258 UNP P03366 GLN 857 ENGINEERED MUTATION SEQADV 6OUN SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 6OUN ARG A 461 UNP P03366 LYS 1060 CONFLICT SEQADV 6OUN THR A 468 UNP P03366 PRO 1067 CONFLICT SEQADV 6OUN ASP A 471 UNP P03366 ASN 1070 CONFLICT SEQADV 6OUN GLN A 512 UNP P03366 LYS 1111 CONFLICT SEQADV 6OUN MET B -11 UNP P03366 EXPRESSION TAG SEQADV 6OUN GLY B -10 UNP P03366 EXPRESSION TAG SEQADV 6OUN SER B -9 UNP P03366 EXPRESSION TAG SEQADV 6OUN SER B -8 UNP P03366 EXPRESSION TAG SEQADV 6OUN HIS B -7 UNP P03366 EXPRESSION TAG SEQADV 6OUN HIS B -6 UNP P03366 EXPRESSION TAG SEQADV 6OUN HIS B -5 UNP P03366 EXPRESSION TAG SEQADV 6OUN HIS B -4 UNP P03366 EXPRESSION TAG SEQADV 6OUN HIS B -3 UNP P03366 EXPRESSION TAG SEQADV 6OUN HIS B -2 UNP P03366 EXPRESSION TAG SEQADV 6OUN SER B -1 UNP P03366 EXPRESSION TAG SEQADV 6OUN SER B 0 UNP P03366 EXPRESSION TAG SEQADV 6OUN ARG B 172 UNP P03366 LYS 771 CONFLICT SEQADV 6OUN SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 558 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 A 558 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 A 558 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 A 558 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 A 558 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 A 558 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 A 558 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 A 558 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 A 558 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 A 558 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 A 558 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 A 558 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 A 558 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 A 558 PRO PHE ARG LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 A 558 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 A 558 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 A 558 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 A 558 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 A 558 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 A 558 GLU LYS ASP SER TRP THR VAL ASN ASP ILE CYS LYS LEU SEQRES 21 A 558 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 A 558 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 A 558 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 A 558 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 A 558 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 A 558 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 A 558 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 A 558 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 A 558 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 A 558 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 A 558 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 A 558 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 A 558 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 A 558 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 A 558 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 A 558 GLY TYR VAL THR ASN ARG GLY ARG GLN LYS VAL VAL THR SEQRES 37 A 558 LEU THR ASP THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 A 558 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 A 558 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 A 558 ALA GLN PRO ASP GLN SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 A 558 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 A 558 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 A 558 GLN VAL ASP LYS LEU VAL SER ALA GLY ILE ARG LYS SEQRES 1 B 452 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER PRO SEQRES 2 B 452 ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS PRO SEQRES 3 B 452 GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU THR SEQRES 4 B 452 GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR GLU SEQRES 5 B 452 MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO GLU SEQRES 6 B 452 ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS LYS SEQRES 7 B 452 ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG GLU SEQRES 8 B 452 LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN LEU SEQRES 9 B 452 GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SER SEQRES 10 B 452 VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER VAL SEQRES 11 B 452 PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE THR SEQRES 12 B 452 ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG TYR SEQRES 13 B 452 GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER PRO SEQRES 14 B 452 ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU PRO SEQRES 15 B 452 PHE ARG LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN TYR SEQRES 16 B 452 MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE GLY SEQRES 17 B 452 GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS LEU SEQRES 18 B 452 LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS GLN SEQRES 19 B 452 LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU HIS SEQRES 20 B 452 PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO GLU SEQRES 21 B 452 LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU VAL SEQRES 22 B 452 GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY ILE SEQRES 23 B 452 LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR LYS SEQRES 24 B 452 ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA GLU SEQRES 25 B 452 LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU PRO SEQRES 26 B 452 VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU ILE SEQRES 27 B 452 ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR TYR SEQRES 28 B 452 GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR GLY SEQRES 29 B 452 LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP VAL SEQRES 30 B 452 LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR GLU SEQRES 31 B 452 SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS LEU SEQRES 32 B 452 PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR GLU SEQRES 33 B 452 TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE VAL SEQRES 34 B 452 ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU GLU SEQRES 35 B 452 LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 1 P 21 DA DC DA DG DT DC DC DC DT DG DT DT DC SEQRES 2 P 21 DG DG G47 DC DG DC DC DDG SEQRES 1 T 27 DA DT DG DG DG DC DG DG DC DG DC DC DC SEQRES 2 T 27 DG DA DA DC DA DG DG DG DA DC DT DG DT SEQRES 3 T 27 DG HET G47 P 817 25 HET DDG P 822 21 HET MG A 601 1 HET MG A 602 1 HET SO4 A 603 5 HET 1RZ A 604 27 HET SO4 P 901 5 HET SO4 T 801 5 HETNAM G47 N2-ETHANETHIOL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM DDG 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM 1RZ LAMIVUDINE TRIPHOSPHATE HETSYN 1RZ LAMIVUDINE-5'-TRIPHOSPHATE; 3TC TRIPHOSPHATE; [[(2R, HETSYN 2 1RZ 5S)-5-(4-AZANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3- HETSYN 3 1RZ OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] PHOSPHONO HETSYN 4 1RZ HYDROGEN PHOSPHATE FORMUL 3 G47 C12 H18 N5 O7 P S FORMUL 3 DDG C10 H14 N5 O6 P FORMUL 5 MG 2(MG 2+) FORMUL 7 SO4 3(O4 S 2-) FORMUL 8 1RZ C8 H14 N3 O12 P3 S FORMUL 11 HOH *11(H2 O) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 ALA A 114 VAL A 118 5 5 HELIX 5 AA5 ASP A 121 LYS A 126 1 6 HELIX 6 AA6 TYR A 127 ALA A 129 5 3 HELIX 7 AA7 GLY A 155 ASN A 175 1 21 HELIX 8 AA8 GLU A 194 TRP A 212 1 19 HELIX 9 AA9 PRO A 217 HIS A 221 5 5 HELIX 10 AB1 VAL A 254 SER A 268 1 15 HELIX 11 AB2 VAL A 276 LEU A 282 1 7 HELIX 12 AB3 THR A 296 LYS A 311 1 16 HELIX 13 AB4 ASN A 363 TRP A 383 1 21 HELIX 14 AB5 GLN A 394 TYR A 405 1 12 HELIX 15 AB6 THR A 473 SER A 489 1 17 HELIX 16 AB7 SER A 499 ALA A 508 1 10 HELIX 17 AB8 SER A 515 LYS A 528 1 14 HELIX 18 AB9 GLY A 544 SER A 553 1 10 HELIX 19 AC1 THR B 27 GLU B 44 1 18 HELIX 20 AC2 PHE B 77 THR B 84 1 8 HELIX 21 AC3 GLY B 99 LYS B 103 5 5 HELIX 22 AC4 GLY B 112 VAL B 118 5 7 HELIX 23 AC5 ASP B 121 LYS B 126 1 6 HELIX 24 AC6 TYR B 127 ALA B 129 5 3 HELIX 25 AC7 SER B 134 GLU B 138 5 5 HELIX 26 AC8 LYS B 154 PHE B 160 1 7 HELIX 27 AC9 PHE B 160 ASN B 175 1 16 HELIX 28 AD1 GLU B 194 TRP B 212 1 19 HELIX 29 AD2 VAL B 254 SER B 268 1 15 HELIX 30 AD3 VAL B 276 LEU B 282 1 7 HELIX 31 AD4 THR B 296 LEU B 310 1 15 HELIX 32 AD5 ASN B 363 TRP B 383 1 21 HELIX 33 AD6 GLN B 394 TRP B 402 1 9 HELIX 34 AD7 THR B 403 TYR B 405 5 3 HELIX 35 AD8 PRO B 420 GLN B 428 1 9 SHEET 1 AA1 2 ILE A 47 LYS A 49 0 SHEET 2 AA1 2 TYR A 144 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O ARG A 72 N ILE A 63 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O SER A 191 N SER A 105 SHEET 3 AA3 3 VAL A 179 TYR A 183 -1 N VAL A 179 O GLY A 190 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O TYR A 232 N TRP A 229 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 2 TRP A 252 THR A 253 0 SHEET 2 AA5 2 VAL A 292 ILE A 293 -1 O ILE A 293 N TRP A 252 SHEET 1 AA6 5 LYS A 347 TYR A 354 0 SHEET 2 AA6 5 TRP A 337 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 AA6 5 ILE A 326 LYS A 331 -1 N ILE A 326 O TYR A 342 SHEET 4 AA6 5 LYS A 388 LEU A 391 1 O LYS A 390 N ALA A 327 SHEET 5 AA6 5 TRP A 414 PHE A 416 1 O GLU A 415 N PHE A 389 SHEET 1 AA7 2 HIS A 361 THR A 362 0 SHEET 2 AA7 2 GLN A 512 SER A 513 -1 O GLN A 512 N THR A 362 SHEET 1 AA8 5 GLN A 464 LEU A 469 0 SHEET 2 AA8 5 GLY A 453 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA8 5 GLU A 438 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA8 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 AA8 5 LYS A 530 TRP A 535 1 O TYR A 532 N ILE A 495 SHEET 1 AA9 3 ILE B 47 ILE B 50 0 SHEET 2 AA9 3 ILE B 142 TYR B 146 -1 O ARG B 143 N ILE B 50 SHEET 3 AA9 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AB1 2 VAL B 60 LYS B 64 0 SHEET 2 AB1 2 TRP B 71 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 AB2 3 SER B 105 ASP B 110 0 SHEET 2 AB2 3 ASP B 186 SER B 191 -1 O LEU B 187 N LEU B 109 SHEET 3 AB2 3 VAL B 179 TYR B 183 -1 N VAL B 179 O GLY B 190 SHEET 1 AB3 2 TRP B 252 THR B 253 0 SHEET 2 AB3 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB4 5 ASN B 348 ALA B 355 0 SHEET 2 AB4 5 GLN B 336 TYR B 342 -1 N ILE B 341 O LYS B 350 SHEET 3 AB4 5 ILE B 326 LYS B 331 -1 N ILE B 326 O TYR B 342 SHEET 4 AB4 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327 SHEET 5 AB4 5 TRP B 414 PHE B 416 1 O GLU B 415 N PHE B 389 LINK SG CYS A 258 SG G47 P 817 1555 1555 2.03 LINK O3' DG P 816 P G47 P 817 1555 1555 1.61 LINK O3' G47 P 817 P DC P 818 1555 1555 1.60 LINK O3' DC P 821 P DDG P 822 1555 1555 1.52 LINK OD2 ASP A 110 MG MG A 602 1555 1555 2.61 LINK O VAL A 111 MG MG A 602 1555 1555 2.25 LINK OD2 ASP A 185 MG MG A 602 1555 1555 2.63 LINK OD1 ASP A 443 MG MG A 601 1555 1555 2.12 LINK OE2 GLU A 478 MG MG A 601 1555 1555 2.21 LINK OD1 ASP A 498 MG MG A 601 1555 1555 2.29 LINK OD2 ASP A 498 MG MG A 601 1555 1555 2.27 LINK MG MG A 602 O3A 1RZ A 604 1555 1555 2.55 LINK MG MG A 602 O3G 1RZ A 604 1555 1555 2.86 LINK MG MG A 602 O1B 1RZ A 604 1555 1555 2.72 CISPEP 1 PRO A 225 PRO A 226 0 0.37 CISPEP 2 PRO A 420 PRO A 421 0 2.34 CISPEP 3 GLY A 543 GLY A 544 0 2.11 SITE 1 AC1 3 ASP A 443 GLU A 478 ASP A 498 SITE 1 AC2 4 ASP A 110 VAL A 111 ASP A 185 1RZ A 604 SITE 1 AC3 5 ARG A 206 GLY A 436 ASN A 460 ARG A 461 SITE 2 AC3 5 ALA B 288 SITE 1 AC4 14 ARG A 72 ASP A 110 VAL A 111 GLY A 112 SITE 2 AC4 14 ASP A 113 ALA A 114 TYR A 115 GLN A 151 SITE 3 AC4 14 ASP A 185 MG A 602 DDG P 822 DG T 705 SITE 4 AC4 14 DC T 706 HOH T 901 SITE 1 AC5 5 DG P 816 G47 P 817 DC P 818 DG T 710 SITE 2 AC5 5 DC T 711 SITE 1 AC6 2 DG T 707 DG T 708 CRYST1 167.011 171.784 105.885 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009444 0.00000