HEADER TRANSFERASE 05-MAY-19 6OUW TITLE 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE (DXPS) FROM DEINOCOCCUS TITLE 2 RADIODURANS WITH ENAMINE INTERMEDIATE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE,DXPS; COMPND 5 EC: 2.2.1.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: DXS, DR_1475; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE, DXPS, THIAMINE DIPHOSPHATE, KEYWDS 2 THIAMINE PYROPHOSPHATE, THDP, TPP, CHANGES, THE MEP PATHWAY, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.Y.-T.CHEN,C.L.DRENNAN REVDAT 5 11-OCT-23 6OUW 1 HETSYN LINK REVDAT 4 20-NOV-19 6OUW 1 REMARK REVDAT 3 28-AUG-19 6OUW 1 JRNL REVDAT 2 10-JUL-19 6OUW 1 JRNL REVDAT 1 03-JUL-19 6OUW 0 JRNL AUTH P.Y.CHEN,A.A.DECOLLI,C.L.FREEL MEYERS,C.L.DRENNAN JRNL TITL X-RAY CRYSTALLOGRAPHY-BASED STRUCTURAL ELUCIDATION OF JRNL TITL 2 ENZYME-BOUND INTERMEDIATES ALONG THE 1-DEOXY-D-XYLULOSE JRNL TITL 3 5-PHOSPHATE SYNTHASE REACTION COORDINATE. JRNL REF J.BIOL.CHEM. V. 294 12405 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31239351 JRNL DOI 10.1074/JBC.RA119.009321 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 23132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3982 - 4.7953 0.99 2846 154 0.1503 0.1787 REMARK 3 2 4.7953 - 3.8066 0.99 2796 146 0.1334 0.1787 REMARK 3 3 3.8066 - 3.3256 1.00 2812 149 0.1551 0.1691 REMARK 3 4 3.3256 - 3.0216 0.99 2768 147 0.1653 0.2061 REMARK 3 5 3.0216 - 2.8050 0.99 2793 140 0.1745 0.2136 REMARK 3 6 2.8050 - 2.6396 0.98 2720 149 0.1819 0.2654 REMARK 3 7 2.6396 - 2.5074 0.97 2714 129 0.2016 0.2520 REMARK 3 8 2.5074 - 2.3983 0.90 2534 135 0.2259 0.2763 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4203 REMARK 3 ANGLE : 0.590 5714 REMARK 3 CHIRALITY : 0.042 651 REMARK 3 PLANARITY : 0.004 744 REMARK 3 DIHEDRAL : 16.649 2480 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -26.2691 27.6911 23.1687 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.4946 REMARK 3 T33: 0.2750 T12: 0.0136 REMARK 3 T13: -0.0129 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.5048 L22: 1.0936 REMARK 3 L33: 0.9915 L12: 0.0791 REMARK 3 L13: 0.1147 L23: -0.3148 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: -0.0181 S13: 0.0116 REMARK 3 S21: -0.1099 S22: 0.0199 S23: 0.1966 REMARK 3 S31: -0.0384 S32: -0.2705 S33: -0.0629 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23154 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.398 REMARK 200 RESOLUTION RANGE LOW (A) : 49.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2O1X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.10 M MOPSO, BIS-TRIS PH 6.5, 12.5% REMARK 280 (W/V) PEG 4000, 20% (W/V) 1,2,6-HEXANETRIOL, 20 MM DL-ARGININE, REMARK 280 20 MM DL-THREONINE, 20 MM DL-HISTIDINE, 20 MM DL-5-HYDROXYLYSINE, REMARK 280 AND 20 MM TRANS-4-HYDROXY-L-PROLINE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.87500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.87500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -25.37826 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.99919 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 910 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 SER A 186 REMARK 465 ILE A 187 REMARK 465 SER A 188 REMARK 465 GLU A 189 REMARK 465 ASN A 190 REMARK 465 VAL A 191 REMARK 465 GLY A 192 REMARK 465 ALA A 193 REMARK 465 MET A 194 REMARK 465 ASN A 195 REMARK 465 LYS A 196 REMARK 465 PHE A 197 REMARK 465 MET A 198 REMARK 465 ARG A 199 REMARK 465 GLY A 200 REMARK 465 LEU A 201 REMARK 465 GLN A 202 REMARK 465 VAL A 203 REMARK 465 GLN A 204 REMARK 465 LYS A 205 REMARK 465 TRP A 206 REMARK 465 PHE A 207 REMARK 465 GLN A 208 REMARK 465 GLU A 209 REMARK 465 GLY A 210 REMARK 465 GLU A 211 REMARK 465 GLY A 212 REMARK 465 ALA A 213 REMARK 465 GLY A 214 REMARK 465 LYS A 215 REMARK 465 LYS A 216 REMARK 465 ALA A 217 REMARK 465 VAL A 218 REMARK 465 GLU A 219 REMARK 465 ALA A 220 REMARK 465 VAL A 221 REMARK 465 SER A 222 REMARK 465 LYS A 223 REMARK 465 PRO A 224 REMARK 465 LEU A 225 REMARK 465 ALA A 226 REMARK 465 ASP A 227 REMARK 465 PHE A 228 REMARK 465 MET A 229 REMARK 465 SER A 230 REMARK 465 ARG A 231 REMARK 465 ALA A 232 REMARK 465 LYS A 233 REMARK 465 ASN A 234 REMARK 465 SER A 235 REMARK 465 THR A 236 REMARK 465 ARG A 237 REMARK 465 HIS A 238 REMARK 465 PHE A 239 REMARK 465 PHE A 240 REMARK 465 ASP A 241 REMARK 465 PRO A 242 REMARK 465 ALA A 243 REMARK 465 SER A 244 REMARK 465 VAL A 245 REMARK 465 ASN A 246 REMARK 465 GLY A 292 REMARK 465 LEU A 293 REMARK 465 SER A 294 REMARK 465 TYR A 295 REMARK 465 ALA A 296 REMARK 465 GLU A 297 REMARK 465 ALA A 298 REMARK 465 ASP A 299 REMARK 465 PRO A 300 REMARK 465 ILE A 301 REMARK 465 TYR A 302 REMARK 465 TRP A 303 REMARK 465 HIS A 304 REMARK 465 GLY A 305 REMARK 465 PRO A 306 REMARK 465 ILE A 627 REMARK 465 GLU A 628 REMARK 465 VAL A 629 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 MET A 185 CG SD CE REMARK 470 LYS A 308 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 445 O HOH A 801 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 70 68.89 -119.34 REMARK 500 VAL A 80 -56.17 66.37 REMARK 500 LYS A 289 93.47 -65.61 REMARK 500 TYR A 322 91.26 -167.68 REMARK 500 ALA A 598 163.68 175.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 154 OD1 REMARK 620 2 ASN A 183 OD1 85.7 REMARK 620 3 HTL A 701 O13 86.8 172.5 REMARK 620 4 HTL A 701 O21 166.6 92.3 95.0 REMARK 620 5 HOH A 835 O 95.2 92.6 88.3 98.2 REMARK 620 6 HOH A 845 O 82.9 86.1 92.8 83.7 177.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 416 OD1 REMARK 620 2 HIS A 470 O 80.6 REMARK 620 3 GLY A 472 O 95.7 113.0 REMARK 620 4 HOH A 814 O 99.6 89.2 154.8 REMARK 620 5 HOH A 882 O 132.6 146.3 74.2 80.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HTL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6OUV RELATED DB: PDB DBREF 6OUW A 1 629 UNP Q9RUB5 DXS_DEIRA 1 629 SEQADV 6OUW MET A -20 UNP Q9RUB5 INITIATING METHIONINE SEQADV 6OUW GLY A -19 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW SER A -18 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW SER A -17 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW HIS A -16 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW HIS A -15 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW HIS A -14 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW HIS A -13 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW HIS A -12 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW HIS A -11 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW SER A -10 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW SER A -9 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW GLY A -8 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW LEU A -7 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW VAL A -6 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW PRO A -5 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW ARG A -4 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW GLY A -3 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW SER A -2 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW HIS A -1 UNP Q9RUB5 EXPRESSION TAG SEQADV 6OUW MET A 0 UNP Q9RUB5 EXPRESSION TAG SEQRES 1 A 650 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 650 LEU VAL PRO ARG GLY SER HIS MET MET ASN GLU LEU PRO SEQRES 3 A 650 GLY THR SER ASP THR PRO LEU LEU ASP GLN ILE HIS GLY SEQRES 4 A 650 PRO LYS ASP LEU LYS ARG LEU SER ARG GLU GLN LEU PRO SEQRES 5 A 650 ALA LEU THR GLU GLU LEU ARG GLY GLU ILE VAL ARG VAL SEQRES 6 A 650 CYS SER ARG GLY GLY LEU HIS LEU ALA SER SER LEU GLY SEQRES 7 A 650 ALA VAL ASP ILE ILE THR ALA LEU HIS TYR VAL LEU ASP SEQRES 8 A 650 SER PRO ARG ASP ARG ILE LEU PHE ASP VAL GLY HIS GLN SEQRES 9 A 650 ALA TYR ALA HIS LYS ILE LEU THR GLY ARG ARG ASP GLN SEQRES 10 A 650 MET ALA ASP ILE LYS LYS GLU GLY GLY ILE SER GLY PHE SEQRES 11 A 650 THR LYS VAL SER GLU SER GLU HIS ASP ALA ILE THR VAL SEQRES 12 A 650 GLY HIS ALA SER THR SER LEU ALA ASN ALA LEU GLY MET SEQRES 13 A 650 ALA LEU ALA ARG ASP ALA GLN GLY LYS ASP PHE HIS VAL SEQRES 14 A 650 ALA ALA VAL ILE GLY ASP GLY SER LEU THR GLY GLY MET SEQRES 15 A 650 ALA LEU ALA ALA LEU ASN THR ILE GLY ASP MET GLY ARG SEQRES 16 A 650 LYS MET LEU ILE VAL LEU ASN ASP ASN GLU MET SER ILE SEQRES 17 A 650 SER GLU ASN VAL GLY ALA MET ASN LYS PHE MET ARG GLY SEQRES 18 A 650 LEU GLN VAL GLN LYS TRP PHE GLN GLU GLY GLU GLY ALA SEQRES 19 A 650 GLY LYS LYS ALA VAL GLU ALA VAL SER LYS PRO LEU ALA SEQRES 20 A 650 ASP PHE MET SER ARG ALA LYS ASN SER THR ARG HIS PHE SEQRES 21 A 650 PHE ASP PRO ALA SER VAL ASN PRO PHE ALA ALA MET GLY SEQRES 22 A 650 VAL ARG TYR VAL GLY PRO VAL ASP GLY HIS ASN VAL GLN SEQRES 23 A 650 GLU LEU VAL TRP LEU LEU GLU ARG LEU VAL ASP LEU ASP SEQRES 24 A 650 GLY PRO THR ILE LEU HIS ILE VAL THR THR LYS GLY LYS SEQRES 25 A 650 GLY LEU SER TYR ALA GLU ALA ASP PRO ILE TYR TRP HIS SEQRES 26 A 650 GLY PRO ALA LYS PHE ASP PRO ALA THR GLY GLU TYR VAL SEQRES 27 A 650 PRO SER SER ALA TYR SER TRP SER ALA ALA PHE GLY GLU SEQRES 28 A 650 ALA VAL THR GLU TRP ALA LYS THR ASP PRO ARG THR PHE SEQRES 29 A 650 VAL VAL THR PRO ALA MET ARG GLU GLY SER GLY LEU VAL SEQRES 30 A 650 GLU PHE SER ARG VAL HIS PRO HIS ARG TYR LEU ASP VAL SEQRES 31 A 650 GLY ILE ALA GLU GLU VAL ALA VAL THR THR ALA ALA GLY SEQRES 32 A 650 MET ALA LEU GLN GLY MET ARG PRO VAL VAL ALA ILE TYR SEQRES 33 A 650 SER THR PHE LEU GLN ARG ALA TYR ASP GLN VAL LEU HIS SEQRES 34 A 650 ASP VAL ALA ILE GLU HIS LEU ASN VAL THR PHE CYS ILE SEQRES 35 A 650 ASP ARG ALA GLY ILE VAL GLY ALA ASP GLY ALA THR HIS SEQRES 36 A 650 ASN GLY VAL PHE ASP LEU SER PHE LEU ARG SER ILE PRO SEQRES 37 A 650 GLY VAL ARG ILE GLY LEU PRO LYS ASP ALA ALA GLU LEU SEQRES 38 A 650 ARG GLY MET LEU LYS TYR ALA GLN THR HIS ASP GLY PRO SEQRES 39 A 650 PHE ALA ILE ARG TYR PRO ARG GLY ASN THR ALA GLN VAL SEQRES 40 A 650 PRO ALA GLY THR TRP PRO ASP LEU LYS TRP GLY GLU TRP SEQRES 41 A 650 GLU ARG LEU LYS GLY GLY ASP ASP VAL VAL ILE LEU ALA SEQRES 42 A 650 GLY GLY LYS ALA LEU ASP TYR ALA LEU LYS ALA ALA GLU SEQRES 43 A 650 ASP LEU PRO GLY VAL GLY VAL VAL ASN ALA ARG PHE VAL SEQRES 44 A 650 LYS PRO LEU ASP GLU GLU MET LEU ARG GLU VAL GLY GLY SEQRES 45 A 650 ARG ALA ARG ALA LEU ILE THR VAL GLU ASP ASN THR VAL SEQRES 46 A 650 VAL GLY GLY PHE GLY GLY ALA VAL LEU GLU ALA LEU ASN SEQRES 47 A 650 SER MET ASN LEU HIS PRO THR VAL ARG VAL LEU GLY ILE SEQRES 48 A 650 PRO ASP GLU PHE GLN GLU HIS ALA THR ALA GLU SER VAL SEQRES 49 A 650 HIS ALA ARG ALA GLY ILE ASP ALA PRO ALA ILE ARG THR SEQRES 50 A 650 VAL LEU ALA GLU LEU GLY VAL ASP VAL PRO ILE GLU VAL HET HTL A 701 29 HET MG A 702 1 HET NA A 703 1 HETNAM HTL 2-ACETYL-THIAMINE DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETSYN HTL 2-ACETYL-3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-4- HETSYN 2 HTL METHYL-5-(4,6,6-TRIHYDROXY-3,5-DIOXA-4,6-DIPHOSPHAHEX- HETSYN 3 HTL 1-YL)THIAZO LIUM INNER SALT P,P'-DIOXIDE FORMUL 2 HTL C14 H21 N4 O8 P2 S 1+ FORMUL 3 MG MG 2+ FORMUL 4 NA NA 1+ FORMUL 5 HOH *114(H2 O) HELIX 1 AA1 LEU A 12 ILE A 16 5 5 HELIX 2 AA2 GLY A 18 LYS A 23 1 6 HELIX 3 AA3 ARG A 24 LEU A 25 5 2 HELIX 4 AA4 SER A 26 GLU A 28 5 3 HELIX 5 AA5 GLN A 29 SER A 46 1 18 HELIX 6 AA6 HIS A 51 ALA A 58 1 8 HELIX 7 AA7 ALA A 58 LEU A 69 1 12 HELIX 8 AA8 ALA A 84 THR A 91 1 8 HELIX 9 AA9 GLY A 92 ILE A 100 5 9 HELIX 10 AB1 THR A 127 ALA A 141 1 15 HELIX 11 AB2 ASP A 154 THR A 158 1 5 HELIX 12 AB3 GLY A 159 GLY A 173 1 15 HELIX 13 AB4 ASN A 263 ARG A 273 1 11 HELIX 14 AB5 SER A 323 ASP A 339 1 17 HELIX 15 AB6 MET A 349 GLY A 354 1 6 HELIX 16 AB7 LEU A 355 HIS A 362 1 8 HELIX 17 AB8 ALA A 372 GLN A 386 1 15 HELIX 18 AB9 SER A 396 GLN A 400 1 5 HELIX 19 AC1 ALA A 402 ASP A 409 1 8 HELIX 20 AC2 ASP A 430 HIS A 434 5 5 HELIX 21 AC3 PHE A 438 LEU A 443 1 6 HELIX 22 AC4 ASP A 456 HIS A 470 1 15 HELIX 23 AC5 GLY A 514 ALA A 524 1 11 HELIX 24 AC6 ASP A 542 ALA A 553 1 12 HELIX 25 AC7 GLY A 567 MET A 579 1 13 HELIX 26 AC8 THR A 599 GLY A 608 1 10 HELIX 27 AC9 ASP A 610 LEU A 621 1 12 SHEET 1 AA1 5 ARG A 75 PHE A 78 0 SHEET 2 AA1 5 VAL A 148 GLY A 153 1 O VAL A 151 N LEU A 77 SHEET 3 AA1 5 MET A 176 ASP A 182 1 O VAL A 179 N ALA A 150 SHEET 4 AA1 5 PRO A 280 VAL A 286 1 O LEU A 283 N ILE A 178 SHEET 5 AA1 5 ARG A 254 ASP A 260 1 N ARG A 254 O ILE A 282 SHEET 1 AA2 2 LYS A 308 PHE A 309 0 SHEET 2 AA2 2 TYR A 316 VAL A 317 -1 O VAL A 317 N LYS A 308 SHEET 1 AA3 7 TYR A 366 ASP A 368 0 SHEET 2 AA3 7 THR A 342 THR A 346 1 N THR A 346 O LEU A 367 SHEET 3 AA3 7 ARG A 389 TYR A 395 1 O VAL A 391 N PHE A 343 SHEET 4 AA3 7 THR A 418 ASP A 422 1 O THR A 418 N VAL A 392 SHEET 5 AA3 7 PHE A 474 ARG A 477 1 O ILE A 476 N ILE A 421 SHEET 6 AA3 7 ARG A 450 GLY A 452 1 N GLY A 452 O ALA A 475 SHEET 7 AA3 7 PHE A 537 LYS A 539 -1 O LYS A 539 N ILE A 451 SHEET 1 AA4 5 GLU A 500 LYS A 503 0 SHEET 2 AA4 5 VAL A 530 ASN A 534 -1 O ASN A 534 N GLU A 500 SHEET 3 AA4 5 VAL A 508 ALA A 512 1 N ILE A 510 O VAL A 533 SHEET 4 AA4 5 ALA A 555 THR A 563 1 O ILE A 557 N LEU A 511 SHEET 5 AA4 5 THR A 584 ILE A 590 1 O LEU A 588 N THR A 558 LINK OD1 ASP A 154 MG MG A 702 1555 1555 2.09 LINK OD1 ASN A 183 MG MG A 702 1555 1555 2.00 LINK OD1 ASN A 416 NA NA A 703 1555 1555 2.95 LINK O HIS A 470 NA NA A 703 1555 1555 2.44 LINK O GLY A 472 NA NA A 703 1555 1555 2.43 LINK O13 HTL A 701 MG MG A 702 1555 1555 2.09 LINK O21 HTL A 701 MG MG A 702 1555 1555 1.99 LINK MG MG A 702 O HOH A 835 1555 1555 2.07 LINK MG MG A 702 O HOH A 845 1555 1555 2.05 LINK NA NA A 703 O HOH A 814 1555 1555 2.44 LINK NA NA A 703 O HOH A 882 1555 1555 2.41 CISPEP 1 SER A 71 PRO A 72 0 7.88 CISPEP 2 GLY A 257 PRO A 258 0 -1.12 CISPEP 3 LYS A 539 PRO A 540 0 -3.75 SITE 1 AC1 22 HIS A 51 SER A 54 VAL A 80 HIS A 82 SITE 2 AC1 22 GLY A 123 HIS A 124 ALA A 125 GLY A 153 SITE 3 AC1 22 ASP A 154 GLY A 155 SER A 156 ASN A 183 SITE 4 AC1 22 LYS A 289 ILE A 371 GLU A 373 PHE A 398 SITE 5 AC1 22 ARG A 401 HIS A 434 MG A 702 HOH A 804 SITE 6 AC1 22 HOH A 835 HOH A 845 SITE 1 AC2 5 ASP A 154 ASN A 183 HTL A 701 HOH A 835 SITE 2 AC2 5 HOH A 845 SITE 1 AC3 6 ASN A 416 ALA A 467 HIS A 470 GLY A 472 SITE 2 AC3 6 HOH A 814 HOH A 882 CRYST1 129.750 85.540 60.572 90.00 114.77 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007707 0.000000 0.003557 0.00000 SCALE2 0.000000 0.011690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018183 0.00000