HEADER HYDROLASE 08-MAY-19 6OVZ TITLE CRYSTAL STRUCTURE OF THE NEW DELHI METALLO-BETA-LACTAMASE-1 ADDUCT TITLE 2 WITH A LYSINE-TARGETED AFFINITY LABEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BLANDM-1,BLANDM-1 METALLO BETA LACTAMASE,METALLO-BETA- COMPND 5 LACTAMASE,METALLO-BETA-LACTAMASE NDM-1,NDM-1,NDM-1 METALLO-BETA- COMPND 6 LACTAMASE,NEW DELHI METALLO-BETA-LACTAMASE NDM-1,SUBCLASS B1 METALLO- COMPND 7 BETA-LACTAMASE,SUBCLASS B1 METALLO-BETA-LACTAMASE NDM-1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: BETA-LACTAMASE; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: BETA-LACTAMASE NDM-1,BLANDM-1,BLANDM-1 METALLO BETA COMPND 13 LACTAMASE,METALLO-BETA-LACTAMASE,NDM-1,NDM-1 METALLO-BETA-LACTAMASE, COMPND 14 NEW DELHI METALLO-BETA-LACTAMASE NDM-1,NEW DELHI METALLO-BETA- COMPND 15 LACTAMASE-1,SUBCLASS B1 METALLO-BETA-LACTAMASE NDM-1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BLANDM-1, BLA NDM-1, APU18_05360, AZ95_0035, BANRA_05542, SOURCE 5 BET08_16280, BVL39_26630, C0R28_25820, C6985_28190, D3O91_26550, SOURCE 6 DWB25_28700, ECS01_0033, EOL26_24905, MS6198_A142, NDM1DOK01_N0175, SOURCE 7 PNDM102337_147, PNDM10505_149; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET27B-STREP-NDM-1; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 15 ORGANISM_TAXID: 562; SOURCE 16 GENE: BLANDM-1, BLA NDM-1, A9X72_27270, AZ95_0035, BANRA_05542, SOURCE 17 E4K51_24975, ECS01_0033, G5603_25730, G9448_24155, NDM1DOK01_N0175, SOURCE 18 PNDM102337_147, PNDM10505_149; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 20 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PET27B-STREP-NDM-1 KEYWDS NDM-1, AFFINITY-LABEL, COVALENT INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.F.MONZINGO,W.FAST,P.W.THOMAS REVDAT 6 15-NOV-23 6OVZ 1 REMARK REVDAT 5 25-OCT-23 6OVZ 1 REMARK REVDAT 4 17-MAY-23 6OVZ 1 COMPND SOURCE REMARK DBREF REVDAT 4 2 1 SEQRES HET HETNAM FORMUL REVDAT 4 3 1 LINK SITE CRYST1 ATOM REVDAT 3 01-JAN-20 6OVZ 1 REMARK REVDAT 2 10-JUL-19 6OVZ 1 JRNL REVDAT 1 12-JUN-19 6OVZ 0 JRNL AUTH P.W.THOMAS,M.CAMMARATA,J.S.BRODBELT,A.F.MONZINGO,R.F.PRATT, JRNL AUTH 2 W.FAST JRNL TITL A LYSINE-TARGETED AFFINITY LABEL FOR SERINE-BETA-LACTAMASE JRNL TITL 2 ALSO COVALENTLY MODIFIES NEW DELHI METALLO-BETA-LACTAMASE-1 JRNL TITL 3 (NDM-1). JRNL REF BIOCHEMISTRY V. 58 2834 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31145588 JRNL DOI 10.1021/ACS.BIOCHEM.9B00393 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 27482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5726 - 4.3429 1.00 2894 154 0.1706 0.1857 REMARK 3 2 4.3429 - 3.4476 1.00 2763 162 0.1605 0.1771 REMARK 3 3 3.4476 - 3.0120 0.99 2685 138 0.1874 0.2429 REMARK 3 4 3.0120 - 2.7367 0.98 2700 122 0.2028 0.2998 REMARK 3 5 2.7367 - 2.5405 0.98 2643 129 0.1972 0.2686 REMARK 3 6 2.5405 - 2.3908 0.96 2568 140 0.1954 0.2273 REMARK 3 7 2.3908 - 2.2711 0.95 2559 133 0.1918 0.2970 REMARK 3 8 2.2711 - 2.1722 0.95 2494 165 0.1839 0.2588 REMARK 3 9 2.1722 - 2.0886 0.93 2524 137 0.1960 0.2755 REMARK 3 10 2.0886 - 2.0165 0.85 2267 105 0.2021 0.2728 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI (220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28507 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.017 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3S0Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE DIHYDRATE, 20% REMARK 280 PEG 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.51150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.79200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.95150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.79200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.51150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.95150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -231.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 MET A 39 REMARK 465 GLU A 40 REMARK 465 THR A 41 REMARK 465 GLY A 42 REMARK 465 ARG A 270 REMARK 465 GLY B 36 REMARK 465 GLN B 37 REMARK 465 GLN B 38 REMARK 465 MET B 39 REMARK 465 GLU B 40 REMARK 465 THR B 41 REMARK 465 GLY B 42 REMARK 465 ARG B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 43 CG OD1 OD2 REMARK 470 MET A 67 CG SD CE REMARK 470 ASP A 202 CG OD1 OD2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 ASP B 43 CG OD1 OD2 REMARK 470 ARG B 52 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 66 CG OD1 OD2 REMARK 470 MET B 67 CG SD CE REMARK 470 PRO B 68 CG CD REMARK 470 ASN B 176 CG OD1 ND2 REMARK 470 LYS B 214 CG CD CE NZ REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 ARG B 264 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 268 CG CD CE NZ REMARK 470 LEU B 269 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 146.14 75.61 REMARK 500 PHE B 46 109.08 -161.21 REMARK 500 ASP B 90 140.73 78.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 95 OD2 REMARK 620 2 ASP A 130 OD2 100.1 REMARK 620 3 HOH A1142 O 82.4 75.4 REMARK 620 4 HOH A1154 O 83.7 152.1 77.7 REMARK 620 5 HOH A1158 O 84.7 71.9 141.9 136.0 REMARK 620 6 HOH A1200 O 84.1 143.2 140.9 64.5 72.2 REMARK 620 7 HOH A1210 O 166.1 91.5 93.3 82.5 106.3 91.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 102.8 REMARK 620 3 HIS A 189 NE2 107.4 113.6 REMARK 620 4 HOH A1187 O 120.4 104.9 107.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 CYS A 208 SG 107.9 REMARK 620 3 HIS A 250 NE2 90.7 114.2 REMARK 620 4 HOH A1180 O 127.1 121.7 85.3 REMARK 620 5 HOH A1187 O 90.1 99.2 144.6 66.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE1 REMARK 620 2 GLU A 152 OE2 48.8 REMARK 620 3 ASP A 223 OD2 93.6 87.3 REMARK 620 4 HOH A1191 O 107.0 68.0 118.5 REMARK 620 5 HOH A1198 O 85.7 132.1 80.7 155.3 REMARK 620 6 HOH B1183 O 149.4 149.9 108.0 81.8 77.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 95 OD2 REMARK 620 2 ASP B 130 OD2 96.9 REMARK 620 3 HOH B1112 O 82.8 148.2 REMARK 620 4 HOH B1157 O 80.6 75.3 73.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HIS B 122 ND1 103.9 REMARK 620 3 HIS B 189 NE2 104.9 115.2 REMARK 620 4 HOH B1139 O 114.7 105.4 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 CYS B 208 SG 110.0 REMARK 620 3 HIS B 250 NE2 92.9 110.5 REMARK 620 4 HOH B1130 O 120.1 121.3 96.1 REMARK 620 5 HOH B1139 O 79.1 97.8 151.6 66.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N9M A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue N9J B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 1004 DBREF 6OVZ A 36 270 UNP E5KIY2 E5KIY2_ECOLX 36 270 DBREF 6OVZ B 36 270 UNP E5KIY2 E5KIY2_ECOLX 36 270 SEQRES 1 A 235 GLY GLN GLN MET GLU THR GLY ASP GLN ARG PHE GLY ASP SEQRES 2 A 235 LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS SEQRES 3 A 235 THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SEQRES 4 A 235 SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU SEQRES 5 A 235 VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN SEQRES 6 A 235 ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL SEQRES 7 A 235 ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET SEQRES 8 A 235 GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR SEQRES 9 A 235 TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU SEQRES 10 A 235 GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA SEQRES 11 A 235 ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY SEQRES 12 A 235 PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER SEQRES 13 A 235 ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA SEQRES 14 A 235 PHE GLY GLY CYS LEU ILE LYS ASP SER LYS ALA LYS SER SEQRES 15 A 235 LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA SEQRES 16 A 235 ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SEQRES 17 A 235 SER MET ILE VAL MET SER HIS SER ALA PRO ASP SER ARG SEQRES 18 A 235 ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU SEQRES 19 A 235 ARG SEQRES 1 B 235 GLY GLN GLN MET GLU THR GLY ASP GLN ARG PHE GLY ASP SEQRES 2 B 235 LEU VAL PHE ARG GLN LEU ALA PRO ASN VAL TRP GLN HIS SEQRES 3 B 235 THR SER TYR LEU ASP MET PRO GLY PHE GLY ALA VAL ALA SEQRES 4 B 235 SER ASN GLY LEU ILE VAL ARG ASP GLY GLY ARG VAL LEU SEQRES 5 B 235 VAL VAL ASP THR ALA TRP THR ASP ASP GLN THR ALA GLN SEQRES 6 B 235 ILE LEU ASN TRP ILE LYS GLN GLU ILE ASN LEU PRO VAL SEQRES 7 B 235 ALA LEU ALA VAL VAL THR HIS ALA HIS GLN ASP LYS MET SEQRES 8 B 235 GLY GLY MET ASP ALA LEU HIS ALA ALA GLY ILE ALA THR SEQRES 9 B 235 TYR ALA ASN ALA LEU SER ASN GLN LEU ALA PRO GLN GLU SEQRES 10 B 235 GLY MET VAL ALA ALA GLN HIS SER LEU THR PHE ALA ALA SEQRES 11 B 235 ASN GLY TRP VAL GLU PRO ALA THR ALA PRO ASN PHE GLY SEQRES 12 B 235 PRO LEU LYS VAL PHE TYR PRO GLY PRO GLY HIS THR SER SEQRES 13 B 235 ASP ASN ILE THR VAL GLY ILE ASP GLY THR ASP ILE ALA SEQRES 14 B 235 PHE GLY GLY CYS LEU ILE KCX ASP SER LYS ALA LYS SER SEQRES 15 B 235 LEU GLY ASN LEU GLY ASP ALA ASP THR GLU HIS TYR ALA SEQRES 16 B 235 ALA SER ALA ARG ALA PHE GLY ALA ALA PHE PRO LYS ALA SEQRES 17 B 235 SER MET ILE VAL MET SER HIS SER ALA PRO ASP SER ARG SEQRES 18 B 235 ALA ALA ILE THR HIS THR ALA ARG MET ALA ASP LYS LEU SEQRES 19 B 235 ARG MODRES 6OVZ KCX B 211 LYS MODIFIED RESIDUE HET KCX B 211 12 HET ZN A1001 1 HET ZN A1002 1 HET ZN A1003 1 HET CA A1004 1 HET N9M A1005 14 HET N9J B1006 12 HET ZN B1001 1 HET ZN B1002 1 HET ZN B1003 1 HET CA B1004 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM N9M BENZYL (CARBOXYOXY)CARBAMATE HETNAM N9J BENZYL HYDROXYCARBAMATE FORMUL 2 KCX C7 H14 N2 O4 FORMUL 3 ZN 6(ZN 2+) FORMUL 6 CA 2(CA 2+) FORMUL 7 N9M C9 H9 N O5 FORMUL 8 N9J C8 H9 N O3 FORMUL 13 HOH *221(H2 O) HELIX 1 AA1 THR A 94 ILE A 109 1 16 HELIX 2 AA2 HIS A 122 GLY A 127 1 6 HELIX 3 AA3 GLY A 128 ALA A 135 1 8 HELIX 4 AA4 ALA A 143 ALA A 149 1 7 HELIX 5 AA5 GLU A 170 ALA A 174 5 5 HELIX 6 AA6 HIS A 228 PHE A 240 1 13 HELIX 7 AA7 ARG A 256 LYS A 268 1 13 HELIX 8 AA8 THR B 94 ILE B 109 1 16 HELIX 9 AA9 HIS B 122 GLY B 127 1 6 HELIX 10 AB1 GLY B 128 ALA B 135 1 8 HELIX 11 AB2 ALA B 143 ALA B 149 1 7 HELIX 12 AB3 GLU B 170 ALA B 174 5 5 HELIX 13 AB4 HIS B 228 PHE B 240 1 13 HELIX 14 AB5 ARG B 256 LYS B 268 1 13 SHEET 1 AA1 8 GLN A 44 PHE A 46 0 SHEET 2 AA1 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 AA1 8 VAL A 58 MET A 67 -1 O GLN A 60 N ARG A 52 SHEET 4 AA1 8 GLY A 71 ASP A 82 -1 O GLY A 71 N MET A 67 SHEET 5 AA1 8 ARG A 85 VAL A 89 -1 O LEU A 87 N VAL A 80 SHEET 6 AA1 8 VAL A 113 VAL A 117 1 O VAL A 117 N VAL A 88 SHEET 7 AA1 8 ALA A 138 ASN A 142 1 O ALA A 138 N ALA A 116 SHEET 8 AA1 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 AA2 4 LEU A 180 PHE A 183 0 SHEET 2 AA2 4 THR A 195 ILE A 198 -1 O THR A 195 N PHE A 183 SHEET 3 AA2 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196 SHEET 4 AA2 4 MET A 245 MET A 248 1 O VAL A 247 N GLY A 206 SHEET 1 AA3 8 GLN B 44 PHE B 46 0 SHEET 2 AA3 8 LEU B 49 ALA B 55 -1 O PHE B 51 N GLN B 44 SHEET 3 AA3 8 VAL B 58 MET B 67 -1 O GLN B 60 N ARG B 52 SHEET 4 AA3 8 GLY B 71 ASP B 82 -1 O GLY B 71 N MET B 67 SHEET 5 AA3 8 ARG B 85 VAL B 89 -1 O LEU B 87 N VAL B 80 SHEET 6 AA3 8 VAL B 113 VAL B 117 1 O VAL B 117 N VAL B 88 SHEET 7 AA3 8 ALA B 138 ASN B 142 1 O TYR B 140 N ALA B 116 SHEET 8 AA3 8 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 AA4 4 LEU B 180 PHE B 183 0 SHEET 2 AA4 4 THR B 195 ILE B 198 -1 O THR B 195 N PHE B 183 SHEET 3 AA4 4 ILE B 203 PHE B 205 -1 O PHE B 205 N VAL B 196 SHEET 4 AA4 4 MET B 245 VAL B 247 1 O VAL B 247 N ALA B 204 LINK NZ LYS A 211 CAM N9M A1005 1555 1555 1.34 LINK C ILE B 210 N KCX B 211 1555 1555 1.34 LINK C KCX B 211 N ASP B 212 1555 1555 1.33 LINK OD2 ASP A 95 CA CA A1004 1555 1555 2.34 LINK NE2 HIS A 120 ZN ZN A1002 1555 1555 2.14 LINK ND1 HIS A 122 ZN ZN A1002 1555 1555 2.10 LINK OD2 ASP A 124 ZN ZN A1001 1555 1555 2.21 LINK OD2 ASP A 130 CA CA A1004 1555 1555 2.31 LINK OE1 GLU A 152 ZN ZN A1003 1555 1555 2.61 LINK OE2 GLU A 152 ZN ZN A1003 1555 1555 2.70 LINK NE2 HIS A 189 ZN ZN A1002 1555 1555 2.06 LINK SG CYS A 208 ZN ZN A1001 1555 1555 2.26 LINK OD2 ASP A 223 ZN ZN A1003 1555 1555 2.38 LINK NE2 HIS A 250 ZN ZN A1001 1555 1555 2.07 LINK ZN ZN A1001 O HOH A1180 1555 1555 2.24 LINK ZN ZN A1001 O HOH A1187 1555 1555 2.44 LINK ZN ZN A1002 O HOH A1187 1555 1555 1.89 LINK ZN ZN A1003 O HOH A1191 1555 1555 2.70 LINK ZN ZN A1003 O HOH A1198 1555 1555 2.42 LINK ZN ZN A1003 O HOH B1183 1555 3554 2.41 LINK CA CA A1004 O HOH A1142 1555 1555 2.61 LINK CA CA A1004 O HOH A1154 1555 1555 2.42 LINK CA CA A1004 O HOH A1158 1555 1555 2.49 LINK CA CA A1004 O HOH A1200 1555 1555 2.36 LINK CA CA A1004 O HOH A1210 1555 1555 2.41 LINK OD2 ASP B 95 CA CA B1004 1555 1555 2.43 LINK NE2 HIS B 120 ZN ZN B1002 1555 1555 2.09 LINK ND1 HIS B 122 ZN ZN B1002 1555 1555 1.95 LINK OD2 ASP B 124 ZN ZN B1001 1555 1555 2.08 LINK OD2 ASP B 130 CA CA B1004 1555 1555 2.45 LINK OE1 GLU B 152 ZN ZN B1003 1555 1555 2.67 LINK NE2 HIS B 189 ZN ZN B1002 1555 1555 2.07 LINK SG CYS B 208 ZN ZN B1001 1555 1555 2.30 LINK NE2 HIS B 250 ZN ZN B1001 1555 1555 2.15 LINK ZN ZN B1001 O HOH B1130 1555 1555 2.17 LINK ZN ZN B1001 O HOH B1139 1555 1555 2.59 LINK ZN ZN B1002 O HOH B1139 1555 1555 2.05 LINK CA CA B1004 O HOH B1112 1555 1555 2.56 LINK CA CA B1004 O HOH B1157 1555 1555 2.71 SITE 1 AC1 5 ASP A 124 CYS A 208 HIS A 250 HOH A1180 SITE 2 AC1 5 HOH A1187 SITE 1 AC2 4 HIS A 120 HIS A 122 HIS A 189 HOH A1187 SITE 1 AC3 5 GLU A 152 ASP A 223 HOH A1191 HOH A1198 SITE 2 AC3 5 HOH B1183 SITE 1 AC4 7 ASP A 95 ASP A 130 HOH A1142 HOH A1154 SITE 2 AC4 7 HOH A1158 HOH A1200 HOH A1210 SITE 1 AC5 3 LYS A 211 HIS A 250 PHE B 70 SITE 1 AC6 5 GLY A 69 VAL B 73 TRP B 93 GLY B 219 SITE 2 AC6 5 HIS B 250 SITE 1 AC7 5 ASP B 124 CYS B 208 HIS B 250 HOH B1130 SITE 2 AC7 5 HOH B1139 SITE 1 AC8 4 HIS B 120 HIS B 122 HIS B 189 HOH B1139 SITE 1 AC9 2 GLU B 152 ASP B 223 SITE 1 AD1 4 ASP B 95 ASP B 130 HOH B1112 HOH B1157 CRYST1 39.023 73.903 145.584 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025626 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006869 0.00000