HEADER OXIDOREDUCTASE 13-MAY-19 6OXN TITLE 2.6 ANGSTROM STRUCTURE OF W45F/H46S GLYOXYLATE/HYDROXYPYRUVATE TITLE 2 REDUCTASE A FROM ESCHERICHIA COLI IN COMPLEX WITH GLYOXYLATE AND NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-KETOACID REDUCTASE; COMPND 5 EC: 1.1.1.79,1.1.1.81; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN B / BL21-DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: B / BL21-DE3; SOURCE 5 GENE: GHRA, ECBD_2566; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS OXIDOREDUCTASE, REDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.VUKSANOVIC,N.R.SILVAGGI REVDAT 3 11-OCT-23 6OXN 1 LINK REVDAT 2 17-JUN-20 6OXN 1 AUTHOR REVDAT 1 20-MAY-20 6OXN 0 JRNL AUTH N.VUKSANOVIC JRNL TITL 2.1 ANGSTROM STRUCTURE OF WILD TYPE JRNL TITL 2 GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A FROM ESCHERICHIA COLI JRNL TITL 3 IN COMPLEX WITH GLYOXYLATE AND NADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 21269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.5168 - 6.2896 0.94 1471 154 0.2082 0.2001 REMARK 3 2 6.2896 - 4.9925 0.96 1397 144 0.1727 0.2030 REMARK 3 3 4.9925 - 4.3614 0.96 1391 145 0.1352 0.1608 REMARK 3 4 4.3614 - 3.9627 0.97 1371 141 0.1256 0.1669 REMARK 3 5 3.9627 - 3.6787 0.97 1367 143 0.1236 0.1579 REMARK 3 6 3.6787 - 3.4618 0.97 1374 142 0.1382 0.1658 REMARK 3 7 3.4618 - 3.2884 0.97 1363 141 0.1395 0.1915 REMARK 3 8 3.2884 - 3.1452 0.98 1376 143 0.1420 0.2113 REMARK 3 9 3.1452 - 3.0242 0.97 1357 141 0.1432 0.1919 REMARK 3 10 3.0242 - 2.9198 0.98 1367 142 0.1549 0.1952 REMARK 3 11 2.9198 - 2.8285 0.98 1355 141 0.1623 0.1942 REMARK 3 12 2.8285 - 2.7476 0.98 1359 141 0.1728 0.2263 REMARK 3 13 2.7476 - 2.6753 0.98 1361 141 0.1652 0.2297 REMARK 3 14 2.6753 - 2.6100 0.98 1360 141 0.1891 0.2833 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2615 REMARK 3 ANGLE : 0.969 3565 REMARK 3 CHIRALITY : 0.050 384 REMARK 3 PLANARITY : 0.005 458 REMARK 3 DIHEDRAL : 15.035 1555 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -18.5999 64.0153 -18.6752 REMARK 3 T TENSOR REMARK 3 T11: 0.2036 T22: 0.2310 REMARK 3 T33: 0.2449 T12: -0.0387 REMARK 3 T13: -0.0107 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.8816 L22: 0.3651 REMARK 3 L33: 1.0071 L12: -0.1100 REMARK 3 L13: -0.4975 L23: 0.1542 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.0569 S13: -0.1118 REMARK 3 S21: 0.0012 S22: -0.0217 S23: 0.0584 REMARK 3 S31: 0.0614 S32: -0.0250 S33: 0.0194 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OXN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21320 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 79.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 37.10 REMARK 200 R MERGE (I) : 0.72760 REMARK 200 R SYM (I) : 0.73740 REMARK 200 FOR THE DATA SET : 82.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 4000, 0.1 M AMMONIUM SULFATE, REMARK 280 0.1 M SODIUM CITRATE 2.5 MM NADP, PH 5.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.02667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.51333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.27000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.75667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.78333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.02667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 31.51333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 15.75667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.27000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 78.78333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -79.48000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 137.66340 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -15.75667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 618 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 575 O HOH A 613 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB CYS A 303 SG CYS A 303 11554 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 92 -97.79 69.20 REMARK 500 ALA A 226 -90.45 -108.40 REMARK 500 VAL A 302 -56.03 -122.32 REMARK 500 CYS A 303 -26.39 82.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 502 O REMARK 620 2 HOH A 542 O 138.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLV A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 DBREF1 6OXN A 1 312 UNP A0A140NAE3_ECOBD DBREF2 6OXN A A0A140NAE3 1 312 SEQADV 6OXN HIS A -5 UNP A0A140NAE EXPRESSION TAG SEQADV 6OXN HIS A -4 UNP A0A140NAE EXPRESSION TAG SEQADV 6OXN HIS A -3 UNP A0A140NAE EXPRESSION TAG SEQADV 6OXN HIS A -2 UNP A0A140NAE EXPRESSION TAG SEQADV 6OXN HIS A -1 UNP A0A140NAE EXPRESSION TAG SEQADV 6OXN HIS A 0 UNP A0A140NAE EXPRESSION TAG SEQADV 6OXN PHE A 45 UNP A0A140NAE TRP 45 ENGINEERED MUTATION SEQADV 6OXN SER A 46 UNP A0A140NAE HIS 46 ENGINEERED MUTATION SEQRES 1 A 318 HIS HIS HIS HIS HIS HIS MET ASP ILE ILE PHE TYR HIS SEQRES 2 A 318 PRO THR PHE ASP THR GLN TRP TRP ILE GLU ALA LEU ARG SEQRES 3 A 318 LYS ALA ILE PRO GLN ALA ARG VAL ARG ALA TRP LYS SER SEQRES 4 A 318 GLY ASP ASN ASP SER ALA ASP TYR ALA LEU VAL PHE SER SEQRES 5 A 318 PRO PRO VAL GLU MET LEU ALA GLY ARG ASP LEU LYS ALA SEQRES 6 A 318 VAL PHE ALA LEU GLY ALA GLY VAL ASP SER ILE LEU SER SEQRES 7 A 318 LYS LEU GLN ALA HIS PRO GLU MET LEU ASN PRO SER VAL SEQRES 8 A 318 PRO LEU PHE ARG LEU GLU ASP THR GLY MET GLY GLU GLN SEQRES 9 A 318 MET GLN GLU TYR ALA VAL SER GLN VAL LEU HIS TRP PHE SEQRES 10 A 318 ARG ARG PHE ASP ASP TYR ARG ILE GLN GLN ASN SER SER SEQRES 11 A 318 HIS TRP GLN PRO LEU PRO GLU TYR HIS ARG GLU ASP PHE SEQRES 12 A 318 THR ILE GLY ILE LEU GLY ALA GLY VAL LEU GLY SER LYS SEQRES 13 A 318 VAL ALA GLN SER LEU GLN THR TRP ARG PHE PRO LEU ARG SEQRES 14 A 318 CYS TRP SER ARG THR ARG LYS SER TRP PRO GLY VAL GLN SEQRES 15 A 318 SER PHE ALA GLY ARG GLU GLU LEU SER ALA PHE LEU SER SEQRES 16 A 318 GLN CYS ARG VAL LEU ILE ASN LEU LEU PRO ASN THR PRO SEQRES 17 A 318 GLU THR VAL GLY ILE ILE ASN GLN GLN LEU LEU GLU LYS SEQRES 18 A 318 LEU PRO ASP GLY ALA TYR LEU LEU ASN LEU ALA ARG GLY SEQRES 19 A 318 VAL HIS VAL VAL GLU ASP ASP LEU LEU ALA ALA LEU ASP SEQRES 20 A 318 SER GLY LYS VAL LYS GLY ALA MET LEU ASP VAL PHE ASN SEQRES 21 A 318 ARG GLU PRO LEU PRO PRO GLU SER PRO LEU TRP GLN HIS SEQRES 22 A 318 PRO ARG VAL THR ILE THR PRO HIS VAL ALA ALA ILE THR SEQRES 23 A 318 ARG PRO ALA GLU ALA VAL GLU TYR ILE SER ARG THR ILE SEQRES 24 A 318 ALA GLN LEU GLU LYS GLY GLU LYS VAL CYS GLY GLN VAL SEQRES 25 A 318 ASP ARG ALA ARG GLY TYR HET GOL A 401 14 HET NAP A 402 73 HET GLV A 403 6 HET NA A 404 1 HET NA A 405 1 HET NA A 406 1 HETNAM GOL GLYCEROL HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GLV GLYOXYLIC ACID HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GLV GLYOXALATE; GLYOXYLATE FORMUL 2 GOL C3 H8 O3 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 GLV C2 H2 O3 FORMUL 5 NA 3(NA 1+) FORMUL 8 HOH *118(H2 O) HELIX 1 AA1 ASP A 11 ILE A 23 1 13 HELIX 2 AA2 PRO A 48 ALA A 53 1 6 HELIX 3 AA3 VAL A 67 HIS A 77 1 11 HELIX 4 AA4 PRO A 78 LEU A 81 5 4 HELIX 5 AA5 GLY A 94 ARG A 112 1 19 HELIX 6 AA6 ARG A 113 SER A 123 1 11 HELIX 7 AA7 HIS A 133 PHE A 137 5 5 HELIX 8 AA8 GLY A 145 THR A 157 1 13 HELIX 9 AA9 GLU A 183 SER A 189 1 7 HELIX 10 AB1 ASN A 209 LEU A 216 1 8 HELIX 11 AB2 ARG A 227 VAL A 231 5 5 HELIX 12 AB3 VAL A 232 SER A 242 1 11 HELIX 13 AB4 ARG A 281 GLY A 299 1 19 SHEET 1 AA1 5 ARG A 27 ALA A 30 0 SHEET 2 AA1 5 ASP A 2 TYR A 6 1 N ILE A 3 O ARG A 27 SHEET 3 AA1 5 TYR A 41 VAL A 44 1 O LEU A 43 N TYR A 6 SHEET 4 AA1 5 ALA A 59 ALA A 62 1 O PHE A 61 N ALA A 42 SHEET 5 AA1 5 LEU A 87 ARG A 89 1 O PHE A 88 N ALA A 62 SHEET 1 AA2 7 VAL A 175 ALA A 179 0 SHEET 2 AA2 7 LEU A 162 SER A 166 1 N CYS A 164 O PHE A 178 SHEET 3 AA2 7 ILE A 139 ILE A 141 1 N ILE A 141 O ARG A 163 SHEET 4 AA2 7 VAL A 193 ASN A 196 1 O VAL A 193 N GLY A 140 SHEET 5 AA2 7 ALA A 220 ASN A 224 1 O TYR A 221 N LEU A 194 SHEET 6 AA2 7 VAL A 245 LEU A 250 1 O MET A 249 N LEU A 222 SHEET 7 AA2 7 VAL A 270 ILE A 272 1 O THR A 271 N LEU A 250 SSBOND 1 CYS A 303 CYS A 303 1555 11554 2.03 LINK NA NA A 406 O HOH A 502 1555 1555 3.04 LINK NA NA A 406 O HOH A 542 1555 1555 2.76 CISPEP 1 GLU A 256 PRO A 257 0 -2.20 SITE 1 AC1 5 GLU A 97 GLN A 100 SER A 154 THR A 157 SITE 2 AC1 5 TRP A 158 SITE 1 AC2 33 ALA A 65 ARG A 89 MET A 99 ALA A 144 SITE 2 AC2 33 GLY A 145 VAL A 146 LEU A 147 TRP A 165 SITE 3 AC2 33 SER A 166 ARG A 167 THR A 168 LYS A 170 SITE 4 AC2 33 LEU A 197 LEU A 198 PRO A 199 LEU A 225 SITE 5 AC2 33 ALA A 226 ARG A 227 ASP A 251 HIS A 275 SITE 6 AC2 33 ALA A 277 ALA A 278 TYR A 312 HOH A 509 SITE 7 AC2 33 HOH A 513 HOH A 518 HOH A 522 HOH A 531 SITE 8 AC2 33 HOH A 534 HOH A 539 HOH A 546 HOH A 555 SITE 9 AC2 33 HOH A 573 SITE 1 AC3 6 GLY A 64 ALA A 65 GLY A 66 ARG A 227 SITE 2 AC3 6 HIS A 275 HOH A 514 SITE 1 AC4 1 ARG A 134 SITE 1 AC5 1 THR A 12 SITE 1 AC6 6 GLY A 66 VAL A 67 SER A 69 ILE A 70 SITE 2 AC6 6 HOH A 502 HOH A 542 CRYST1 158.960 158.960 94.540 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006291 0.003632 0.000000 0.00000 SCALE2 0.000000 0.007264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010577 0.00000