HEADER IMMUNE SYSTEM 15-MAY-19 6OZ3 TITLE CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY N49P9.1 FAB IN TITLE 2 COMPLEX WITH HIV-1 CLADE A/E STRAIN 93TH057 GP120 CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLADE A/E 93TH057 HIV-1 GP120 CORE; COMPND 3 CHAIN: G; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: N49P9.1 ANTIBODY FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: N49P9.1 ANTIBODY FAB LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: HIV-1 ENV; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL: HEK 293 GNT1-; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL: HEK 293; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM_CELL: HEK 293 KEYWDS HIV-1, VRC01-CLASS ANTIBODY, CD4 BINDING SITE, CLADE A/E 93TH057 KEYWDS 2 GP120, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX, N49P9.1, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR W.D.TOLBERT,M.PAZGIER REVDAT 3 22-JAN-25 6OZ3 1 REMARK HELIX SHEET SSBOND REVDAT 3 2 1 LINK ATOM REVDAT 2 11-OCT-23 6OZ3 1 REVDAT 1 19-AUG-20 6OZ3 0 JRNL AUTH W.D.TOLBERT,M.PAZGIER JRNL TITL CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING ANTIBODY N49P9.1 JRNL TITL 2 FAB IN COMPLEX WITH HIV-1 CLADE A/E STRAIN 93TH)57 GP120 JRNL TITL 3 CORE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 14754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0300 - 5.3700 0.91 2806 155 0.2319 0.3160 REMARK 3 2 5.3700 - 4.2700 0.94 2813 127 0.2250 0.2639 REMARK 3 3 4.2700 - 3.7300 0.96 2818 157 0.2695 0.2833 REMARK 3 4 3.7300 - 3.3900 0.96 2794 158 0.2972 0.3375 REMARK 3 5 3.3900 - 3.1500 0.94 2790 136 0.3108 0.3166 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5953 REMARK 3 ANGLE : 0.719 8104 REMARK 3 CHIRALITY : 0.049 940 REMARK 3 PLANARITY : 0.007 1031 REMARK 3 DIHEDRAL : 11.768 839 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'G' AND RESID 47 THROUGH 491) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6460 -30.0804 38.2630 REMARK 3 T TENSOR REMARK 3 T11: 1.0584 T22: 0.8913 REMARK 3 T33: 1.3585 T12: -0.1457 REMARK 3 T13: 0.1334 T23: -0.0846 REMARK 3 L TENSOR REMARK 3 L11: 2.6394 L22: 3.8515 REMARK 3 L33: 3.3413 L12: -0.5298 REMARK 3 L13: -1.2439 L23: -1.1020 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: -0.4050 S13: -0.4538 REMARK 3 S21: 0.5008 S22: -0.0594 S23: 0.4744 REMARK 3 S31: -0.1046 S32: -0.0973 S33: 0.0059 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'H' AND RESID 1 THROUGH 213) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0457 -7.9727 8.4499 REMARK 3 T TENSOR REMARK 3 T11: 0.9623 T22: 1.2693 REMARK 3 T33: 0.9862 T12: -0.0671 REMARK 3 T13: -0.0231 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.2580 L22: 1.2064 REMARK 3 L33: 3.2458 L12: 0.1817 REMARK 3 L13: -0.5352 L23: -0.7965 REMARK 3 S TENSOR REMARK 3 S11: -0.1173 S12: 0.2149 S13: 0.1159 REMARK 3 S21: -0.0835 S22: -0.2607 S23: -0.3196 REMARK 3 S31: 0.0688 S32: 0.7893 S33: -0.0078 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'L' AND RESID 3 THROUGH 209) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7358 1.0661 0.9294 REMARK 3 T TENSOR REMARK 3 T11: 1.0673 T22: 1.1433 REMARK 3 T33: 0.9562 T12: 0.0057 REMARK 3 T13: -0.1243 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.5770 L22: 1.1978 REMARK 3 L33: 4.0723 L12: -0.4162 REMARK 3 L13: -0.7500 L23: -0.5019 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: 0.4715 S13: 0.1799 REMARK 3 S21: -0.1286 S22: -0.0214 S23: -0.1050 REMARK 3 S31: -0.1787 S32: 0.1123 S33: -0.0146 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241608. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14779 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.79400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3TGT, 3TNN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 6000 0.1 M BIS-TRIS PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.37700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.08250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.22700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.08250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.37700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.22700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.37700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.22700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.08250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.22700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.37700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.08250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA H 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL G 42 REMARK 465 PRO G 43 REMARK 465 VAL G 44 REMARK 465 TRP G 45 REMARK 465 LYS G 46 REMARK 465 CYS G 192 REMARK 465 VAL G 193 REMARK 465 LYS G 194 REMARK 465 LEU G 195 REMARK 465 THR G 196 REMARK 465 GLY G 197 REMARK 465 GLY G 198 REMARK 465 SER G 199 REMARK 465 VAL G 200 REMARK 465 ILE G 201 REMARK 465 LYS G 202 REMARK 465 GLN G 203 REMARK 465 ALA G 204 REMARK 465 CYS G 205 REMARK 465 ASN G 317 REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 GLY G 324 REMARK 465 ILE G 402 REMARK 465 GLY G 403 REMARK 465 ASN G 404 REMARK 465 GLU G 405 REMARK 465 THR G 406 REMARK 465 MET G 407 REMARK 465 LYS G 408 REMARK 465 GLY G 409 REMARK 465 GLU G 492 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 LYS H 214 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP G 57 48.05 -97.82 REMARK 500 PRO G 79 50.27 -54.68 REMARK 500 HIS G 85 109.97 -59.79 REMARK 500 ASN G 88 44.27 36.10 REMARK 500 ASP G 230 47.86 -82.12 REMARK 500 LYS G 231 -86.73 53.49 REMARK 500 SER G 244 115.58 -161.19 REMARK 500 GLN G 258 -61.92 62.39 REMARK 500 ASN G 276 137.25 -171.10 REMARK 500 PHE G 391 33.84 -96.12 REMARK 500 THR G 430 -11.11 -150.47 REMARK 500 ALA G 460 60.61 62.26 REMARK 500 SER H 7 38.44 -150.21 REMARK 500 ALA H 16 -160.28 52.86 REMARK 500 THR H 25 -51.70 -121.99 REMARK 500 GLN H 32 92.82 61.15 REMARK 500 GLU H 99 -137.32 63.45 REMARK 500 ASN H 100 -67.96 -94.87 REMARK 500 LYS H 117 -82.53 60.86 REMARK 500 SER H 127 -62.93 -94.74 REMARK 500 PHE H 146 146.13 -177.53 REMARK 500 SER H 186 46.61 -75.23 REMARK 500 CYS H 196 -169.09 -77.98 REMARK 500 THR L 26 -58.71 52.30 REMARK 500 ILE L 32 -167.37 46.55 REMARK 500 ASP L 51 -65.64 56.95 REMARK 500 PRO L 59 -175.10 -66.42 REMARK 500 ASN L 77 75.35 54.58 REMARK 500 GLU L 83 98.06 -69.09 REMARK 500 TYR L 91 -122.52 58.70 REMARK 500 LYS L 110 149.55 62.77 REMARK 500 ASN L 128 39.67 36.88 REMARK 500 ASP L 151 -94.77 56.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 1 O REMARK 620 2 HIS H 1 O 0.0 REMARK 620 N 1 DBREF1 6OZ3 G 44 492 UNP A0A0M3KKW9_9HIV1 DBREF2 6OZ3 G A0A0M3KKW9 1 353 DBREF 6OZ3 H 1 214 PDB 6OZ3 6OZ3 1 214 DBREF 6OZ3 L 3 212 PDB 6OZ3 6OZ3 3 212 SEQADV 6OZ3 VAL G 42 UNP A0A0M3KKW EXPRESSION TAG SEQADV 6OZ3 PRO G 43 UNP A0A0M3KKW EXPRESSION TAG SEQADV 6OZ3 SER G 375 UNP A0A0M3KKW HIS 242 ENGINEERED MUTATION SEQRES 1 G 355 VAL PRO VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS SEQRES 2 G 355 ALA SER ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN SEQRES 3 G 355 VAL TRP ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN SEQRES 4 G 355 PRO GLN GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE SEQRES 5 G 355 ASN MET TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU SEQRES 6 G 355 ASP VAL ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS SEQRES 7 G 355 VAL LYS LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS SEQRES 8 G 355 PRO LYS ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS SEQRES 9 G 355 THR PRO ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS SEQRES 10 G 355 ASN PHE ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER SEQRES 11 G 355 VAL GLN CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR SEQRES 12 G 355 GLN LEU LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE SEQRES 13 G 355 ILE ILE ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR SEQRES 14 G 355 ILE ILE VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS SEQRES 15 G 355 THR ARG PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP SEQRES 16 G 355 ILE ARG LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP SEQRES 17 G 355 ASN LYS VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU SEQRES 18 G 355 HIS PHE ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER SEQRES 19 G 355 GLY GLY ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS SEQRES 20 G 355 ARG GLY GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE SEQRES 21 G 355 ASN ASN THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS SEQRES 22 G 355 ASN GLY THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE SEQRES 23 G 355 ILE ASN MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA SEQRES 24 G 355 PRO PRO ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE SEQRES 25 G 355 THR GLY ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN SEQRES 26 G 355 THR SER ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE SEQRES 27 G 355 LYS ASP ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL SEQRES 28 G 355 VAL GLN ILE GLU SEQRES 1 H 221 HIS VAL GLN LEU VAL GLN SER GLY GLY GLY VAL LYS LYS SEQRES 2 H 221 ILE GLY ALA ALA VAL ARG ILE SER CYS GLU VAL THR GLY SEQRES 3 H 221 TYR LYS PHE MET ASP GLN LEU ILE ASN TRP VAL ARG GLN SEQRES 4 H 221 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP MET ASN SEQRES 5 H 221 PRO THR TYR GLY GLN VAL ASN TYR SER TRP ARG PHE GLU SEQRES 6 H 221 GLY ARG VAL THR MET THR ARG ASP MET ASP THR GLU THR SEQRES 7 H 221 ALA PHE MET GLU LEU ARG GLY LEU ARG VAL ASP ASP THR SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA ARG GLY PRO SER GLY GLU ASN SEQRES 9 H 221 TYR PRO PHE HIS TYR TRP GLY GLN GLY VAL ARG VAL VAL SEQRES 10 H 221 VAL SER SER PRO SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 221 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 221 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 221 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 221 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 221 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 221 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 221 PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 1 L 203 LEU THR GLN PRO ALA SER MET SER ALA SER PRO GLY GLN SEQRES 2 L 203 SER VAL THR ILE SER CYS SER GLY THR ARG HIS ILE ILE SEQRES 3 L 203 SER ALA TRP PHE GLN GLN TYR PRO GLY LYS PRO PRO LYS SEQRES 4 L 203 LEU ILE ILE PHE ASP ASP ASP LYS ARG PRO SER GLY VAL SEQRES 5 L 203 PRO SER ARG PHE SER ALA SER ARG PRO GLY ASP THR ALA SEQRES 6 L 203 SER LEU THR ILE SER ASN VAL GLN PRO GLU ASP GLU ALA SEQRES 7 L 203 THR TYR ILE CYS ASN THR TYR GLU PHE PHE GLY GLY GLY SEQRES 8 L 203 THR ARG LEU THR VAL LEU SER GLN PRO LYS ALA ALA PRO SEQRES 9 L 203 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 10 L 203 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 11 L 203 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 12 L 203 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 13 L 203 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 14 L 203 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 15 L 203 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 16 L 203 THR VAL ALA PRO THR GLU CYS SER HET NAG G 501 14 HET NAG G 502 14 HET NAG G 503 14 HET NAG G 504 14 HET NAG G 505 14 HET NAG G 506 14 HET NAG G 507 14 HET NAG G 508 14 HET NAG G 509 14 HET NAG G 510 14 HET NAG G 511 14 HET NA H 301 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 11(C8 H15 N O6) FORMUL 15 NA NA 1+ HELIX 1 AA1 HIS G 66 ALA G 73 1 8 HELIX 2 AA2 ASN G 94 ASN G 98 5 5 HELIX 3 AA3 ASN G 99 LEU G 116 1 18 HELIX 4 AA4 GLY G 335 PHE G 353 1 19 HELIX 5 AA5 ASP G 368 MET G 373 1 6 HELIX 6 AA6 ILE G 475 LEU G 483 1 9 HELIX 7 AA7 ARG H 83 THR H 87 5 5 HELIX 8 AA8 GLN L 79 GLU L 83 5 5 HELIX 9 AA9 SER L 121 ALA L 127 1 7 HELIX 10 AB1 THR L 181 LYS L 186 1 6 SHEET 1 AA1 3 CYS G 74 PRO G 76 0 SHEET 2 AA1 3 PHE G 53 SER G 56 1 N CYS G 54 O VAL G 75 SHEET 3 AA1 3 ILE G 215 CYS G 218 -1 O HIS G 216 N ALA G 55 SHEET 1 AA2 2 GLU G 91 ASN G 92 0 SHEET 2 AA2 2 PRO G 238 CYS G 239 -1 O CYS G 239 N GLU G 91 SHEET 1 AA3 3 SER G 243 SER G 244 0 SHEET 2 AA3 3 TYR G 223 LYS G 227 -1 N LYS G 227 O SER G 243 SHEET 3 AA3 3 LYS G 487 GLN G 490 -1 O VAL G 489 N VAL G 224 SHEET 1 AA4 5 LEU G 259 LEU G 261 0 SHEET 2 AA4 5 ILE G 443 ARG G 456 -1 O THR G 450 N LEU G 260 SHEET 3 AA4 5 ILE G 284 ARG G 298 -1 N ARG G 298 O ILE G 443 SHEET 4 AA4 5 ASN G 465 PRO G 470 0 SHEET 5 AA4 5 THR G 358 PHE G 361 1 N ILE G 360 O GLU G 466 SHEET 1 AA5 7 ILE G 271 ARG G 273 0 SHEET 2 AA5 7 ILE G 284 ARG G 298 -1 O ILE G 285 N ARG G 273 SHEET 3 AA5 7 ILE G 443 ARG G 456 -1 O ILE G 443 N ARG G 298 SHEET 4 AA5 7 LYS G 328 ASN G 334 0 SHEET 5 AA5 7 THR G 413 LYS G 421 -1 O CYS G 418 N ALA G 329 SHEET 6 AA5 7 GLU G 381 CYS G 385 -1 N PHE G 382 O LYS G 421 SHEET 7 AA5 7 HIS G 374 CYS G 378 -1 N CYS G 378 O GLU G 381 SHEET 1 AA6 4 LEU H 4 VAL H 5 0 SHEET 2 AA6 4 GLY H 15 VAL H 24 -1 O GLU H 23 N VAL H 5 SHEET 3 AA6 4 THR H 77 LEU H 82C-1 O GLY H 82B N ALA H 16 SHEET 4 AA6 4 VAL H 67 ASP H 72 -1 N THR H 70 O PHE H 79 SHEET 1 AA7 6 GLY H 10 LYS H 13 0 SHEET 2 AA7 6 VAL H 107 SER H 112 1 O SER H 112 N LYS H 12 SHEET 3 AA7 6 ALA H 88 ARG H 94 -1 N TYR H 90 O VAL H 107 SHEET 4 AA7 6 ILE H 34 GLN H 39 -1 N ASN H 35 O ALA H 93 SHEET 5 AA7 6 LEU H 45 MET H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA7 6 VAL H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA8 4 GLY H 10 LYS H 13 0 SHEET 2 AA8 4 VAL H 107 SER H 112 1 O SER H 112 N LYS H 12 SHEET 3 AA8 4 ALA H 88 ARG H 94 -1 N TYR H 90 O VAL H 107 SHEET 4 AA8 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA9 4 PHE H 122 LEU H 124 0 SHEET 2 AA9 4 ALA H 137 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA9 4 TYR H 176 THR H 183 -1 O TYR H 176 N TYR H 145 SHEET 4 AA9 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB1 4 PHE H 122 LEU H 124 0 SHEET 2 AB1 4 ALA H 137 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AB1 4 TYR H 176 THR H 183 -1 O TYR H 176 N TYR H 145 SHEET 4 AB1 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB2 2 THR H 151 TRP H 154 0 SHEET 2 AB2 2 CYS H 196 ASN H 199 -1 O ASN H 199 N THR H 151 SHEET 1 AB3 5 SER L 8 ALA L 13 0 SHEET 2 AB3 5 THR L 102 VAL L 106 1 O THR L 105 N ALA L 13 SHEET 3 AB3 5 ALA L 84 THR L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB3 5 ALA L 34 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AB3 5 LYS L 45 ILE L 48 -1 O LYS L 45 N GLN L 37 SHEET 1 AB4 4 SER L 8 ALA L 13 0 SHEET 2 AB4 4 THR L 102 VAL L 106 1 O THR L 105 N ALA L 13 SHEET 3 AB4 4 ALA L 84 THR L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB4 4 PHE L 97 PHE L 98 -1 O PHE L 97 N THR L 90 SHEET 1 AB5 3 SER L 18 CYS L 23 0 SHEET 2 AB5 3 ALA L 71 SER L 76 -1 O LEU L 73 N ILE L 21 SHEET 3 AB5 3 PHE L 62 SER L 65 -1 N SER L 65 O SER L 72 SHEET 1 AB6 4 SER L 114 PHE L 118 0 SHEET 2 AB6 4 ALA L 130 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 AB6 4 TYR L 172 LEU L 180 -1 O ALA L 174 N ILE L 136 SHEET 4 AB6 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB7 4 SER L 114 PHE L 118 0 SHEET 2 AB7 4 ALA L 130 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 AB7 4 TYR L 172 LEU L 180 -1 O ALA L 174 N ILE L 136 SHEET 4 AB7 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB8 4 SER L 153 PRO L 154 0 SHEET 2 AB8 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB8 4 TYR L 191 HIS L 197 -1 O SER L 192 N LYS L 149 SHEET 4 AB8 4 SER L 200 VAL L 206 -1 O SER L 200 N HIS L 197 SSBOND 1 CYS G 54 CYS G 74 1555 1555 2.03 SSBOND 2 CYS G 218 CYS G 247 1555 1555 2.04 SSBOND 3 CYS G 228 CYS G 239 1555 1555 2.03 SSBOND 4 CYS G 296 CYS G 331 1555 1555 2.03 SSBOND 5 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 6 CYS G 385 CYS G 418 1555 1555 2.03 SSBOND 7 CYS G 395 CYS G 410 1555 1555 2.03 SSBOND 8 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 9 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 10 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 11 CYS L 134 CYS L 193 1555 1555 2.03 LINK ND2 ASN G 234 C1 NAG G 501 1555 1555 1.44 LINK ND2 ASN G 241 C1 NAG G 502 1555 1555 1.45 LINK ND2 ASN G 262 C1 NAG G 503 1555 1555 1.44 LINK ND2 ASN G 276 C1 NAG G 504 1555 1555 1.45 LINK ND2 ASN G 289 C1 NAG G 505 1555 1555 1.44 LINK ND2 ASN G 295 C1 NAG G 506 1555 1555 1.44 LINK ND2 ASN G 334 C1 NAG G 507 1555 1555 1.44 LINK ND2 ASN G 355 C1 NAG G 511 1555 1555 1.45 LINK ND2 ASN G 386 C1 NAG G 508 1555 1555 1.44 LINK ND2 ASN G 392 C1 NAG G 509 1555 1555 1.44 LINK ND2 ASN G 448 C1 NAG G 510 1555 1555 1.44 LINK O HIS H 1 NA NA H 301 1555 1555 2.07 LINK O HIS H 1 NA NA H 301 1555 8555 2.07 CISPEP 1 TYR H 100A PRO H 100B 0 -1.87 CISPEP 2 PHE H 146 PRO H 147 0 -13.69 CISPEP 3 GLU H 148 PRO H 149 0 -0.46 CISPEP 4 TYR L 140 PRO L 141 0 -0.09 CRYST1 104.754 110.454 152.165 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009546 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006572 0.00000