HEADER ISOMERASE,DNA BINDING PROTEIN 16-MAY-19 6OZW TITLE CRYSTAL STRUCTURE OF THE 65-KILODALTON AMINO-TERMINAL FRAGMENT OF DNA TITLE 2 TOPOISOMERASE I FROM STREPTOCOCCUS MUTANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-575; COMPND 5 SYNONYM: DNA TOPOISOMERASE I; COMPND 6 EC: 5.6.2.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS SEROTYPE C (STRAIN ATCC SOURCE 3 700610 / UA159); SOURCE 4 ORGANISM_TAXID: 210007; SOURCE 5 STRAIN: ATCC 700610 / UA159; SOURCE 6 GENE: TOPA, SMU_1002; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS TOPOISOMERASE, SUPERCOILED, DNA BINDING PROTEIN, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JONES,K.E.HEVENER REVDAT 4 11-OCT-23 6OZW 1 LINK REVDAT 3 15-JAN-20 6OZW 1 JRNL REVDAT 2 01-JAN-20 6OZW 1 REMARK REVDAT 1 26-JUN-19 6OZW 0 JRNL AUTH J.A.JONES,K.E.HEVENER JRNL TITL CRYSTAL STRUCTURE OF THE 65-KILODALTON AMINO-TERMINAL JRNL TITL 2 FRAGMENT OF DNA TOPOISOMERASE I FROM THE GRAM-POSITIVE MODEL JRNL TITL 3 ORGANISM STREPTOCOCCUS MUTANS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 516 333 2019 JRNL REFN ESSN 1090-2104 JRNL PMID 31204053 JRNL DOI 10.1016/J.BBRC.2019.06.034 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.1 REMARK 3 NUMBER OF REFLECTIONS : 32714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1970 - 4.7209 1.00 3362 166 0.1516 0.1797 REMARK 3 2 4.7209 - 3.7476 1.00 3217 173 0.1537 0.2383 REMARK 3 3 3.7476 - 3.2740 1.00 3123 200 0.1951 0.2760 REMARK 3 4 3.2740 - 2.9747 0.99 3157 155 0.2302 0.2775 REMARK 3 5 2.9747 - 2.7615 0.99 3117 181 0.2490 0.2976 REMARK 3 6 2.7615 - 2.5987 0.99 3040 169 0.2411 0.3513 REMARK 3 7 2.5987 - 2.4685 0.94 2974 154 0.2544 0.3568 REMARK 3 8 2.4685 - 2.3611 0.81 2495 147 0.2468 0.2863 REMARK 3 9 2.3611 - 2.2702 0.69 2154 92 0.2364 0.2926 REMARK 3 10 2.2702 - 2.1918 0.59 1863 88 0.2325 0.3003 REMARK 3 11 2.1918 - 2.1233 0.49 1518 77 0.2253 0.3128 REMARK 3 12 2.1233 - 2.0626 0.34 1043 49 0.2292 0.3697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4447 REMARK 3 ANGLE : 0.915 5963 REMARK 3 CHIRALITY : 0.052 658 REMARK 3 PLANARITY : 0.005 761 REMARK 3 DIHEDRAL : 2.903 2731 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39033 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.94400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 1ECL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.6 MG ML-1 IN A 3UL:3UL 1:1 RATIO REMARK 280 PROTEIN TO CONDITION, CRYSTALLIZATION CONDITION 0.2 M MAGNESIUM REMARK 280 FORMATE DIHYDRATE, 25% W/V PEG 3350 AT 277.15 K, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.29050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.18300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.29050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.18300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 VAL A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 LYS A 14 REMARK 465 LYS A 15 REMARK 465 ARG A 16 REMARK 465 ALA A 17 REMARK 465 THR A 18 REMARK 465 HIS A 347 REMARK 465 GLY A 348 REMARK 465 ASN A 349 REMARK 465 HIS A 350 REMARK 465 VAL A 351 REMARK 465 ARG A 352 REMARK 465 ASN A 353 REMARK 465 ALA A 354 REMARK 465 SER A 355 REMARK 465 GLY A 356 REMARK 465 ALA A 357 REMARK 465 GLN A 358 REMARK 465 ASP A 359 REMARK 465 ASN A 436 REMARK 465 ASP A 437 REMARK 465 SER A 438 REMARK 465 ASP A 439 REMARK 465 LYS A 440 REMARK 465 GLN A 575 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 713 O HOH A 951 1.94 REMARK 500 O HOH A 713 O HOH A 919 2.02 REMARK 500 O GLU A 374 O HOH A 701 2.08 REMARK 500 OG1 THR A 322 O HOH A 702 2.10 REMARK 500 O HOH A 921 O HOH A 970 2.15 REMARK 500 NH1 ARG A 264 O HOH A 703 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 42 24.74 -68.53 REMARK 500 ASP A 100 151.48 -46.67 REMARK 500 ILE A 131 76.18 -103.49 REMARK 500 VAL A 176 -84.03 -132.31 REMARK 500 ARG A 184 -70.24 -61.84 REMARK 500 LYS A 250 -91.43 -76.07 REMARK 500 LEU A 305 46.35 -91.68 REMARK 500 ASN A 308 8.18 -69.51 REMARK 500 PRO A 445 150.69 -48.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD2 REMARK 620 2 HOH A 949 O 93.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 193 O REMARK 620 2 GLU A 197 OE1 114.2 REMARK 620 3 HOH A 827 O 102.9 133.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 789 O REMARK 620 2 HOH A 968 O 107.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 833 O REMARK 620 2 HOH A 880 O 100.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 795 O REMARK 620 2 HOH A 814 O 62.5 REMARK 620 3 HOH A 964 O 127.5 166.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 618 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 619 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 620 DBREF 6OZW A 1 575 UNP Q8DUD3 Q8DUD3_STRMU 1 575 SEQADV 6OZW MET A -19 UNP Q8DUD3 INITIATING METHIONINE SEQADV 6OZW GLY A -18 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW SER A -17 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW SER A -16 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW HIS A -15 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW HIS A -14 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW HIS A -13 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW HIS A -12 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW HIS A -11 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW HIS A -10 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW SER A -9 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW SER A -8 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW GLY A -7 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW LEU A -6 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW VAL A -5 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW PRO A -4 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW ARG A -3 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW GLY A -2 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW SER A -1 UNP Q8DUD3 EXPRESSION TAG SEQADV 6OZW HIS A 0 UNP Q8DUD3 EXPRESSION TAG SEQRES 1 A 595 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 595 LEU VAL PRO ARG GLY SER HIS MET THR SER LYS THR THR SEQRES 3 A 595 THR THR VAL LYS LYS THR SER LYS LYS ARG ALA THR PRO SEQRES 4 A 595 LYS LYS ASN LEU VAL ILE VAL GLU SER PRO ALA LYS ALA SEQRES 5 A 595 LYS THR ILE GLU LYS TYR LEU GLY ARG SER TYR LYS VAL SEQRES 6 A 595 VAL ALA SER VAL GLY HIS ILE ARG ASP LEU LYS LYS SER SEQRES 7 A 595 SER MET SER ILE ASP PHE ASP ASN ASN TYR GLU PRO GLN SEQRES 8 A 595 TYR ILE ASN ILE ARG GLY LYS GLY PRO LEU ILE ASN SER SEQRES 9 A 595 LEU LYS LYS GLU ALA LYS ASN ALA LYS GLN ILE PHE LEU SEQRES 10 A 595 ALA SER ASP PRO ASP ARG GLU GLY GLU ALA ILE SER TRP SEQRES 11 A 595 HIS LEU ALA HIS ILE LEU ASP LEU ASP LEU LYS GLY LYS SEQRES 12 A 595 ASN ARG VAL VAL PHE ASN GLU ILE THR LYS ASP ALA VAL SEQRES 13 A 595 LYS ASN ALA PHE VAL GLU PRO ARG GLN ILE ASP MET ASP SEQRES 14 A 595 LEU VAL ASP ALA GLN GLN ALA ARG ARG VAL LEU ASP ARG SEQRES 15 A 595 ILE VAL GLY TYR SER ILE SER PRO ILE LEU TRP LYS LYS SEQRES 16 A 595 VAL LYS LYS GLY LEU SER ALA GLY ARG VAL GLN SER VAL SEQRES 17 A 595 ALA LEU LYS LEU ILE ILE ASP ARG GLU ASN GLU ILE LYS SEQRES 18 A 595 ALA PHE LYS PRO GLU GLU TYR TRP SER ILE ASP GLY PHE SEQRES 19 A 595 PHE LYS LYS GLY ASN LYS LYS PHE GLN ALA ASN PHE TYR SEQRES 20 A 595 GLY LEU ASP ASN LYS LYS THR LYS LEU LYS SER ASN ASP SEQRES 21 A 595 ASP VAL LYS LYS VAL LEU THR ARG ILE LYS ASN ASP ASP SEQRES 22 A 595 PHE LEU VAL ASP LYS VAL GLU LYS LYS GLU ARG LYS ARG SEQRES 23 A 595 ASN ALA PRO LEU PRO TYR THR THR SER SER LEU GLN GLN SEQRES 24 A 595 ASP ALA ALA ASN LYS ILE ASN PHE ARG THR ARG LYS THR SEQRES 25 A 595 MET MET VAL ALA GLN GLN LEU TYR GLU GLY ILE ARG LEU SEQRES 26 A 595 GLY SER ASN GLY GLN GLN GLY LEU ILE THR TYR MET ARG SEQRES 27 A 595 THR ASP SER THR ARG ILE SER PRO VAL ALA GLN ASN ASP SEQRES 28 A 595 ALA ALA ASN TYR ILE THR GLU HIS PHE GLY ALA GLU TYR SEQRES 29 A 595 SER LYS HIS GLY ASN HIS VAL ARG ASN ALA SER GLY ALA SEQRES 30 A 595 GLN ASP ALA HIS GLU ALA ILE ARG PRO SER ASN VAL ASN SEQRES 31 A 595 HIS THR PRO GLU SER ILE ALA LYS TYR LEU ASP LYS ASP SEQRES 32 A 595 GLN LEU LYS LEU TYR THR LEU ILE TRP ASN ARG PHE VAL SEQRES 33 A 595 ALA SER GLN MET THR ALA ALA VAL PHE ASP THR VAL LYS SEQRES 34 A 595 VAL ASN LEU THR GLN ASN GLY VAL LEU PHE ILE ALA ASN SEQRES 35 A 595 GLY SER GLN ILE LYS PHE LYS GLY TYR MET ALA VAL TYR SEQRES 36 A 595 ASN ASP SER ASP LYS THR LYS VAL LEU PRO GLU MET ILE SEQRES 37 A 595 LYS GLY GLU THR VAL LYS LYS ILE SER ALA ASN PRO GLU SEQRES 38 A 595 GLN HIS PHE THR GLN PRO PRO ALA ARG TYR SER GLU ALA SEQRES 39 A 595 SER LEU ILE LYS THR LEU GLU GLU ASN GLY VAL GLY ARG SEQRES 40 A 595 PRO SER THR TYR ALA PRO THR LEU GLU THR ILE GLN LYS SEQRES 41 A 595 ARG TYR TYR VAL ARG LEU VAL SER LYS ARG PHE GLU PRO SEQRES 42 A 595 THR GLU LEU GLY GLU ILE VAL ASN SER LEU ILE ILE GLU SEQRES 43 A 595 PHE PHE PRO ASP ILE VAL ASP VAL LYS PHE THR ALA GLU SEQRES 44 A 595 MET GLU SER LYS LEU ASP GLU VAL GLU ILE GLY LYS GLU SEQRES 45 A 595 GLU TRP GLN LYS VAL ILE ASP GLN PHE TYR LYS PRO PHE SEQRES 46 A 595 GLU LYS GLU VAL ILE LYS ALA GLU GLU GLN HET MG A 601 1 HET MG A 602 1 HET MG A 603 1 HET MG A 604 1 HET MG A 605 1 HET MG A 606 1 HET FMT A 607 3 HET FMT A 608 3 HET FMT A 609 3 HET FMT A 610 3 HET FMT A 611 3 HET FMT A 612 3 HET FMT A 613 3 HET FMT A 614 3 HET FMT A 615 3 HET FMT A 616 3 HET FMT A 617 3 HET FMT A 618 3 HET FMT A 619 3 HET FMT A 620 3 HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID FORMUL 2 MG 6(MG 2+) FORMUL 8 FMT 14(C H2 O2) FORMUL 22 HOH *313(H2 O) HELIX 1 AA1 SER A 28 GLY A 40 1 13 HELIX 2 AA2 LYS A 78 ALA A 92 1 15 HELIX 3 AA3 ASP A 102 LEU A 116 1 15 HELIX 4 AA4 THR A 132 GLU A 142 1 11 HELIX 5 AA5 ASP A 147 VAL A 176 1 30 HELIX 6 AA6 GLY A 183 PHE A 203 1 21 HELIX 7 AA7 SER A 238 ILE A 249 1 12 HELIX 8 AA8 THR A 273 ASN A 286 1 14 HELIX 9 AA9 ARG A 288 GLY A 302 1 15 HELIX 10 AB1 GLY A 306 ASN A 308 5 3 HELIX 11 AB2 SER A 325 PHE A 340 1 16 HELIX 12 AB3 GLY A 341 SER A 345 5 5 HELIX 13 AB4 THR A 372 ALA A 377 1 6 HELIX 14 AB5 LYS A 378 LEU A 380 5 3 HELIX 15 AB6 ASP A 381 SER A 398 1 18 HELIX 16 AB7 LYS A 429 TYR A 435 5 7 HELIX 17 AB8 SER A 472 ASN A 483 1 12 HELIX 18 AB9 THR A 490 ARG A 501 1 12 HELIX 19 AC1 THR A 514 PHE A 528 1 15 HELIX 20 AC2 PRO A 529 VAL A 532 5 4 HELIX 21 AC3 ASP A 533 ILE A 549 1 17 HELIX 22 AC4 GLU A 553 GLU A 574 1 22 SHEET 1 AA1 3 TYR A 43 ALA A 47 0 SHEET 2 AA1 3 ASN A 22 VAL A 26 1 N ASN A 22 O LYS A 44 SHEET 3 AA1 3 GLN A 94 LEU A 97 1 O PHE A 96 N LEU A 23 SHEET 1 AA2 2 ARG A 53 LEU A 55 0 SHEET 2 AA2 2 TYR A 72 ASN A 74 -1 O ILE A 73 N ASP A 54 SHEET 1 AA3 2 ILE A 62 ASP A 63 0 SHEET 2 AA3 2 GLU A 69 PRO A 70 -1 O GLU A 69 N ASP A 63 SHEET 1 AA4 7 GLU A 207 LYS A 217 0 SHEET 2 AA4 7 LYS A 220 LEU A 229 -1 O ALA A 224 N GLY A 213 SHEET 3 AA4 7 VAL A 417 PHE A 428 -1 O LEU A 418 N TYR A 227 SHEET 4 AA4 7 ALA A 403 GLN A 414 -1 N LEU A 412 O PHE A 419 SHEET 5 AA4 7 ASP A 253 ARG A 266 -1 N LYS A 262 O THR A 407 SHEET 6 AA4 7 THR A 452 PHE A 464 -1 O VAL A 453 N PHE A 254 SHEET 7 AA4 7 GLU A 207 LYS A 217 -1 N TYR A 208 O HIS A 463 SHEET 1 AA5 2 ILE A 303 ARG A 304 0 SHEET 2 AA5 2 GLN A 310 GLN A 311 -1 O GLN A 311 N ILE A 303 SHEET 1 AA6 2 VAL A 504 VAL A 507 0 SHEET 2 AA6 2 ARG A 510 PRO A 513 -1 O GLU A 512 N ARG A 505 LINK OD2 ASP A 161 MG MG A 605 1555 1555 2.85 LINK O ILE A 193 MG MG A 604 1555 1555 2.86 LINK OE1 GLU A 197 MG MG A 604 1555 1555 2.87 LINK MG MG A 601 O HOH A 789 1555 1555 2.84 LINK MG MG A 601 O HOH A 968 1555 1555 1.85 LINK MG MG A 602 O HOH A 864 1555 1555 2.89 LINK MG MG A 603 O HOH A 833 1555 1555 2.68 LINK MG MG A 603 O HOH A 880 1555 1555 2.90 LINK MG MG A 604 O HOH A 827 1555 1555 2.77 LINK MG MG A 605 O HOH A 949 1555 1555 2.61 LINK MG MG A 606 O HOH A 795 1555 4556 2.89 LINK MG MG A 606 O HOH A 814 1555 1555 2.73 LINK MG MG A 606 O HOH A 964 1555 1555 2.96 SITE 1 AC1 3 ARG A 157 HOH A 789 HOH A 968 SITE 1 AC2 3 ARG A 158 ARG A 162 HOH A 864 SITE 1 AC3 3 ARG A 318 HOH A 833 HOH A 880 SITE 1 AC4 4 ILE A 193 ARG A 196 GLU A 197 HOH A 827 SITE 1 AC5 4 ARG A 157 ASP A 161 ARG A 184 HOH A 949 SITE 1 AC6 6 ASN A 74 GLY A 79 GLU A 199 HOH A 795 SITE 2 AC6 6 HOH A 814 HOH A 964 SITE 1 AC7 6 ASP A 102 ARG A 318 SER A 489 HOH A 832 SITE 2 AC7 6 HOH A 866 HOH A 894 SITE 1 AC8 6 ASN A 415 GLY A 416 HOH A 727 HOH A 753 SITE 2 AC8 6 HOH A 755 HOH A 803 SITE 1 AC9 4 ARG A 196 TYR A 471 HOH A 760 HOH A 829 SITE 1 AD1 1 ALA A 360 SITE 1 AD2 2 LYS A 175 LEU A 523 SITE 1 AD3 6 ASN A 129 THR A 315 TYR A 316 HIS A 361 SITE 2 AD3 6 GLU A 362 ALA A 363 SITE 1 AD4 6 ASP A 212 LYS A 291 LYS A 382 ASP A 383 SITE 2 AD4 6 GLU A 461 FMT A 620 SITE 1 AD5 3 LYS A 201 HOH A 721 HOH A 801 SITE 1 AD6 6 GLU A 69 ASP A 152 TRP A 554 GLN A 555 SITE 2 AD6 6 HOH A 764 HOH A 957 SITE 1 AD7 4 GLU A 36 GLY A 40 ARG A 41 HOH A 845 SITE 1 AD8 2 HIS A 114 ASP A 117 SITE 1 AD9 1 PRO A 326 SITE 1 AE1 3 LYS A 291 GLU A 461 FMT A 613 CRYST1 88.581 98.366 72.706 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011289 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013754 0.00000