HEADER SIGNALING PROTEIN/INHIBITOR 17-MAY-19 6P0I TITLE CRYSTAL STRUCTURE OF GDP-BOUND HUMAN RALA IN A COVALENT COMPLEX WITH TITLE 2 ARYL SULFONYL FLUORIDE COMPOUNDS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAL-A; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RALA, RAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAL GTPASE, RALA, COVALENT INHIBITOR, SULFONYL FLUORIDE, SIGNALING KEYWDS 2 PROTEIN, SIGNALING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.BUM-ERDENE,G.GONZALEZ-GUTIERREZ,D.LIU,M.K.GHOZAYEL,D.XU,S.O.MEROUEH REVDAT 4 11-OCT-23 6P0I 1 LINK REVDAT 3 15-APR-20 6P0I 1 JRNL REVDAT 2 01-APR-20 6P0I 1 JRNL REVDAT 1 04-MAR-20 6P0I 0 JRNL AUTH K.BUM-ERDENE,D.LIU,G.GONZALEZ-GUTIERREZ,M.K.GHOZAYEL,D.XU, JRNL AUTH 2 S.O.MEROUEH JRNL TITL SMALL-MOLECULE COVALENT BOND FORMATION AT TYROSINE CREATES A JRNL TITL 2 BINDING SITE AND INHIBITS ACTIVATION OF RAL GTPASES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 7131 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32179690 JRNL DOI 10.1073/PNAS.1913654117 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15_3459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 61802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3013 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0200 - 3.3100 1.00 2837 157 0.1565 0.1871 REMARK 3 2 3.3100 - 2.6200 1.00 2719 162 0.1359 0.1494 REMARK 3 3 2.6200 - 2.2900 1.00 2710 132 0.1168 0.1214 REMARK 3 4 2.2900 - 2.0800 1.00 2664 171 0.1065 0.1218 REMARK 3 5 2.0800 - 1.9300 1.00 2685 151 0.1012 0.1255 REMARK 3 6 1.9300 - 1.8200 1.00 2690 129 0.1020 0.1100 REMARK 3 7 1.8200 - 1.7300 1.00 2666 141 0.0964 0.1283 REMARK 3 8 1.7300 - 1.6500 1.00 2663 132 0.0944 0.1192 REMARK 3 9 1.6500 - 1.5900 1.00 2699 120 0.0926 0.1176 REMARK 3 10 1.5900 - 1.5300 1.00 2643 120 0.0937 0.1252 REMARK 3 11 1.5300 - 1.4900 1.00 2701 118 0.0966 0.1065 REMARK 3 12 1.4900 - 1.4400 1.00 2651 145 0.1048 0.1236 REMARK 3 13 1.4400 - 1.4100 1.00 2655 125 0.1115 0.1403 REMARK 3 14 1.4100 - 1.3700 1.00 2638 147 0.1151 0.1494 REMARK 3 15 1.3700 - 1.3400 1.00 2668 126 0.1258 0.1512 REMARK 3 16 1.3400 - 1.3100 1.00 2651 119 0.1359 0.2046 REMARK 3 17 1.3100 - 1.2900 1.00 2642 157 0.1497 0.1896 REMARK 3 18 1.2900 - 1.2600 1.00 2651 135 0.1517 0.1880 REMARK 3 19 1.2600 - 1.2400 1.00 2660 134 0.1548 0.1680 REMARK 3 20 1.2400 - 1.2200 1.00 2609 136 0.1744 0.1989 REMARK 3 21 1.2200 - 1.2000 1.00 2642 129 0.1892 0.1918 REMARK 3 22 1.2000 - 1.1800 1.00 2645 127 0.2129 0.2079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.081 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1516 REMARK 3 ANGLE : 1.181 2056 REMARK 3 CHIRALITY : 0.090 216 REMARK 3 PLANARITY : 0.007 271 REMARK 3 DIHEDRAL : 11.104 883 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241641. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61827 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80700 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1U8Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE PH 5.5, 18-22% REMARK 280 PEG3350., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.62000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.62000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.16500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.42500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.16500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.62000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.42500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.16500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.62000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.42500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.16500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 527 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 634 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 LYS B 7 REMARK 465 GLY B 8 REMARK 465 GLN B 9 REMARK 465 ASN B 10 REMARK 465 GLU B 180 REMARK 465 HIS B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 465 HIS B 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 75 O HOH B 511 1.53 REMARK 500 O HOH B 600 O HOH B 638 1.95 REMARK 500 O HOH B 522 O HOH B 616 1.97 REMARK 500 OE1 GLU B 174 NH1 ARG B 178 2.03 REMARK 500 O HOH B 602 O HOH B 624 2.05 REMARK 500 O HOH B 520 O HOH B 607 2.07 REMARK 500 O HOH B 504 O HOH B 664 2.09 REMARK 500 OD1 ASP B 42 O HOH B 501 2.10 REMARK 500 O ACT B 403 O HOH B 502 2.14 REMARK 500 O HOH B 560 O HOH B 588 2.15 REMARK 500 O HOH B 524 O HOH B 670 2.15 REMARK 500 O HOH B 600 O HOH B 688 2.18 REMARK 500 O HOH B 579 O HOH B 674 2.19 REMARK 500 O HOH B 631 O HOH B 678 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 510 O HOH B 665 3655 1.91 REMARK 500 O HOH B 520 O HOH B 675 3655 2.01 REMARK 500 ND2 ASN B 119 O HOH B 545 3555 2.10 REMARK 500 O HOH B 613 O HOH B 667 3655 2.11 REMARK 500 OE1 GLU B 174 O HOH B 577 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 79 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 128 39.28 71.81 REMARK 500 ARG B 161 -2.38 81.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 28 OG REMARK 620 2 GDP B 401 O3B 88.6 REMARK 620 3 HOH B 534 O 81.2 94.5 REMARK 620 4 HOH B 540 O 94.7 169.3 96.0 REMARK 620 5 HOH B 550 O 90.4 84.0 171.5 85.9 REMARK 620 6 HOH B 559 O 173.7 90.6 92.7 87.2 95.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 410 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 147 OE2 REMARK 620 2 HOH B 576 O 86.0 REMARK 620 3 HOH B 578 O 107.2 126.4 REMARK 620 4 HOH B 618 O 148.0 62.3 96.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NL7 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 410 DBREF 6P0I B 1 178 UNP P11233 RALA_HUMAN 1 178 SEQADV 6P0I LEU B 179 UNP P11233 EXPRESSION TAG SEQADV 6P0I GLU B 180 UNP P11233 EXPRESSION TAG SEQADV 6P0I HIS B 181 UNP P11233 EXPRESSION TAG SEQADV 6P0I HIS B 182 UNP P11233 EXPRESSION TAG SEQADV 6P0I HIS B 183 UNP P11233 EXPRESSION TAG SEQADV 6P0I HIS B 184 UNP P11233 EXPRESSION TAG SEQADV 6P0I HIS B 185 UNP P11233 EXPRESSION TAG SEQADV 6P0I HIS B 186 UNP P11233 EXPRESSION TAG SEQRES 1 B 186 MET ALA ALA ASN LYS PRO LYS GLY GLN ASN SER LEU ALA SEQRES 2 B 186 LEU HIS LYS VAL ILE MET VAL GLY SER GLY GLY VAL GLY SEQRES 3 B 186 LYS SER ALA LEU THR LEU GLN PHE MET TYR ASP GLU PHE SEQRES 4 B 186 VAL GLU ASP TYR GLU PRO THR LYS ALA ASP SER TYR ARG SEQRES 5 B 186 LYS LYS VAL VAL LEU ASP GLY GLU GLU VAL GLN ILE ASP SEQRES 6 B 186 ILE LEU ASP THR ALA GLY GLN GLU ASP TYR ALA ALA ILE SEQRES 7 B 186 ARG ASP ASN TYR PHE ARG SER GLY GLU GLY PHE LEU CYS SEQRES 8 B 186 VAL PHE SER ILE THR GLU MET GLU SER PHE ALA ALA THR SEQRES 9 B 186 ALA ASP PHE ARG GLU GLN ILE LEU ARG VAL LYS GLU ASP SEQRES 10 B 186 GLU ASN VAL PRO PHE LEU LEU VAL GLY ASN LYS SER ASP SEQRES 11 B 186 LEU GLU ASP LYS ARG GLN VAL SER VAL GLU GLU ALA LYS SEQRES 12 B 186 ASN ARG ALA GLU GLN TRP ASN VAL ASN TYR VAL GLU THR SEQRES 13 B 186 SER ALA LYS THR ARG ALA ASN VAL ASP LYS VAL PHE PHE SEQRES 14 B 186 ASP LEU MET ARG GLU ILE ARG ALA ARG LEU GLU HIS HIS SEQRES 15 B 186 HIS HIS HIS HIS HET GDP B 401 40 HET EDO B 402 10 HET ACT B 403 7 HET GOL B 404 14 HET NL7 B 405 32 HET CA B 406 1 HET CL B 407 1 HET CL B 408 1 HET CL B 409 1 HET NA B 410 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM NL7 4-[(5-METHOXYPYRIDIN-3-YL)SULFAMOYL]BENZENE-1-SULFONIC HETNAM 2 NL7 ACID HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 EDO C2 H6 O2 FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 GOL C3 H8 O3 FORMUL 6 NL7 C12 H12 N2 O6 S2 FORMUL 7 CA CA 2+ FORMUL 8 CL 3(CL 1-) FORMUL 11 NA NA 1+ FORMUL 12 HOH *194(H2 O) HELIX 1 AA1 GLY B 26 ASP B 37 1 12 HELIX 2 AA2 TYR B 75 GLY B 86 1 12 HELIX 3 AA3 GLU B 97 GLU B 116 1 20 HELIX 4 AA4 LEU B 131 ARG B 135 5 5 HELIX 5 AA5 SER B 138 ASN B 150 1 13 HELIX 6 AA6 ASN B 163 LEU B 179 1 17 SHEET 1 AA1 6 ASP B 49 LEU B 57 0 SHEET 2 AA1 6 GLU B 60 ASP B 68 -1 O ASP B 68 N ASP B 49 SHEET 3 AA1 6 ALA B 13 VAL B 20 1 N VAL B 17 O ASP B 65 SHEET 4 AA1 6 GLY B 88 SER B 94 1 O VAL B 92 N VAL B 20 SHEET 5 AA1 6 PHE B 122 ASN B 127 1 O ASN B 127 N PHE B 93 SHEET 6 AA1 6 ASN B 152 THR B 156 1 O ASN B 152 N LEU B 124 LINK OH TYR B 82 S16 NL7 B 405 1555 1555 1.48 LINK OG SER B 28 CA CA B 406 1555 1555 2.25 LINK OE2 GLU B 147 NA NA B 410 1555 1555 2.46 LINK O3B GDP B 401 CA CA B 406 1555 1555 2.21 LINK CA CA B 406 O HOH B 534 1555 1555 2.22 LINK CA CA B 406 O HOH B 540 1555 1555 2.22 LINK CA CA B 406 O HOH B 550 1555 1555 2.26 LINK CA CA B 406 O HOH B 559 1555 1555 2.25 LINK NA NA B 410 O HOH B 576 1555 3555 2.81 LINK NA NA B 410 O HOH B 578 1555 1555 2.45 LINK NA NA B 410 O HOH B 618 1555 3555 2.50 SITE 1 AC1 23 GLY B 24 VAL B 25 GLY B 26 LYS B 27 SITE 2 AC1 23 SER B 28 ALA B 29 PHE B 39 GLU B 41 SITE 3 AC1 23 ASN B 127 LYS B 128 ASP B 130 LEU B 131 SITE 4 AC1 23 SER B 157 ALA B 158 LYS B 159 CA B 406 SITE 5 AC1 23 HOH B 515 HOH B 544 HOH B 550 HOH B 559 SITE 6 AC1 23 HOH B 567 HOH B 586 HOH B 650 SITE 1 AC2 6 PHE B 34 LYS B 53 VAL B 55 GLU B 132 SITE 2 AC2 6 HOH B 601 HOH B 664 SITE 1 AC3 6 ASN B 150 VAL B 151 ASN B 152 HOH B 502 SITE 2 AC3 6 HOH B 522 HOH B 589 SITE 1 AC4 5 ARG B 79 ALA B 103 ASP B 106 PHE B 107 SITE 2 AC4 5 GLN B 110 SITE 1 AC5 10 ALA B 48 THR B 69 ALA B 70 GLY B 71 SITE 2 AC5 10 GLN B 72 GLU B 73 ARG B 79 TYR B 82 SITE 3 AC5 10 PHE B 83 HOH B 565 SITE 1 AC6 6 SER B 28 GDP B 401 HOH B 534 HOH B 540 SITE 2 AC6 6 HOH B 550 HOH B 559 SITE 1 AC7 3 GLU B 132 ARG B 135 HOH B 637 SITE 1 AC8 2 THR B 46 ALA B 48 SITE 1 AC9 1 SER B 50 SITE 1 AD1 4 GLU B 147 HOH B 576 HOH B 578 HOH B 618 CRYST1 64.850 104.330 55.240 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015420 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018103 0.00000