HEADER HYDROLASE/HYDROLASE INHIBITOR 17-MAY-19 6P0P TITLE HUMAN BETA-TRYPTASE CO-CRYSTAL STRUCTURE WITH 5-{4-[3-(AMINOMETHYL) TITLE 2 PHENYL]PIPERIDINE-1-CARBONYL}-2-(3'-{4-[3-(AMINOMETHYL) TITLE 3 PHENYL]PIPERIDINE-1-CARBONYL}-[1,1'-BIPHENYL]-3-YL)-2-HYDROXY-2H-1,3, TITLE 4 2-BENZODIOXABOROL-2-UIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTASE ALPHA/BETA-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRYPTASE-1,TRYPTASE I,TRYPTASE ALPHA-1; COMPND 5 EC: 3.4.21.59; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: LUNG; SOURCE 6 GENE: TPSAB1, TPS1, TPS2, TPSB1; SOURCE 7 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS TRYPTASE, BIVALENT INHIBITOR, PROTEASE INHIBITOR, HYDROLASE, KEYWDS 2 HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.F.GIARDINA,M.R.PINGLE,D.S.WERNER,P.B.FEINBERG,K.W.FOREMAN, AUTHOR 2 D.E.BERGSTROM,L.D.ARNOLD,F.BARANY REVDAT 3 11-OCT-23 6P0P 1 REMARK REVDAT 2 08-APR-20 6P0P 1 JRNL REVDAT 1 25-MAR-20 6P0P 0 JRNL AUTH S.F.GIARDINA,D.S.WERNER,M.PINGLE,P.B.FEINBERG,K.W.FOREMAN, JRNL AUTH 2 D.E.BERGSTROM,L.D.ARNOLD,F.BARANY JRNL TITL NOVEL, SELF-ASSEMBLING DIMERIC INHIBITORS OF HUMAN BETA JRNL TITL 2 TRYPTASE. JRNL REF J.MED.CHEM. V. 63 3004 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32057241 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01689 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1349 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3812 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.652 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.226 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.808 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4112 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3757 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5647 ; 1.889 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8643 ; 1.021 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 7.046 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;33.220 ;23.409 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;17.984 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.596 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 589 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4608 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 970 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1942 ; 2.025 ; 3.171 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1941 ; 2.025 ; 3.170 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2424 ; 3.225 ; 4.750 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2425 ; 3.226 ; 4.752 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2170 ; 2.496 ; 3.521 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2171 ; 2.496 ; 3.523 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3224 ; 3.999 ; 5.160 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4599 ; 6.070 ;26.000 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4560 ; 6.055 ;26.015 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6P0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000240260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19717 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2ZEB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9 MG/ML PROTEIN INCUBATED WITH REMARK 280 COMPOUND FOR 30 MINUTES ON ICE PRIOR TO SETUP WITH 30% PEG1500, REMARK 280 0.1 M SODIUM ACETATE, PH 4.6, 0.2 M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.06067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.12133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 110.12133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.06067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 PRO A 10 REMARK 465 VAL A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 ARG A 15 REMARK 465 ALA A 16 REMARK 465 TYR A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 GLY A 23 REMARK 465 GLN A 24 REMARK 465 ALA A 25 REMARK 465 LEU A 26 REMARK 465 GLN A 27 REMARK 465 ARG A 28 REMARK 465 VAL A 29 REMARK 465 GLY A 30 REMARK 465 LYS A 274 REMARK 465 PRO A 275 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 ASN B 3 REMARK 465 LEU B 4 REMARK 465 LEU B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 ALA B 8 REMARK 465 LEU B 9 REMARK 465 PRO B 10 REMARK 465 VAL B 11 REMARK 465 LEU B 12 REMARK 465 ALA B 13 REMARK 465 SER B 14 REMARK 465 ARG B 15 REMARK 465 ALA B 16 REMARK 465 TYR B 17 REMARK 465 ALA B 18 REMARK 465 ALA B 19 REMARK 465 PRO B 20 REMARK 465 ALA B 21 REMARK 465 PRO B 22 REMARK 465 GLY B 23 REMARK 465 GLN B 24 REMARK 465 ALA B 25 REMARK 465 LEU B 26 REMARK 465 GLN B 27 REMARK 465 ARG B 28 REMARK 465 VAL B 29 REMARK 465 GLY B 30 REMARK 465 LYS B 274 REMARK 465 PRO B 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 HIS A 136 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 TYR B 97 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 LYS B 273 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 217 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 96 -23.20 85.23 REMARK 500 TYR A 114 -52.22 -130.09 REMARK 500 PHE A 149 70.37 54.43 REMARK 500 PRO A 272 150.08 -48.28 REMARK 500 TYR B 96 -23.51 77.89 REMARK 500 TYR B 114 -51.41 -124.57 REMARK 500 ASP B 166 45.94 36.44 REMARK 500 ASN B 214 -169.83 -162.89 REMARK 500 SER B 243 -67.16 -122.33 REMARK 500 ASN B 252 28.32 49.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y35 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 304 DBREF 6P0P A 1 275 UNP Q15661 TRYB1_HUMAN 1 275 DBREF 6P0P B 1 275 UNP Q15661 TRYB1_HUMAN 1 275 SEQADV 6P0P LYS A 132 UNP Q15661 ASN 132 CONFLICT SEQADV 6P0P LYS B 132 UNP Q15661 ASN 132 CONFLICT SEQRES 1 A 275 MET LEU ASN LEU LEU LEU LEU ALA LEU PRO VAL LEU ALA SEQRES 2 A 275 SER ARG ALA TYR ALA ALA PRO ALA PRO GLY GLN ALA LEU SEQRES 3 A 275 GLN ARG VAL GLY ILE VAL GLY GLY GLN GLU ALA PRO ARG SEQRES 4 A 275 SER LYS TRP PRO TRP GLN VAL SER LEU ARG VAL HIS GLY SEQRES 5 A 275 PRO TYR TRP MET HIS PHE CYS GLY GLY SER LEU ILE HIS SEQRES 6 A 275 PRO GLN TRP VAL LEU THR ALA ALA HIS CYS VAL GLY PRO SEQRES 7 A 275 ASP VAL LYS ASP LEU ALA ALA LEU ARG VAL GLN LEU ARG SEQRES 8 A 275 GLU GLN HIS LEU TYR TYR GLN ASP GLN LEU LEU PRO VAL SEQRES 9 A 275 SER ARG ILE ILE VAL HIS PRO GLN PHE TYR THR ALA GLN SEQRES 10 A 275 ILE GLY ALA ASP ILE ALA LEU LEU GLU LEU GLU GLU PRO SEQRES 11 A 275 VAL LYS VAL SER SER HIS VAL HIS THR VAL THR LEU PRO SEQRES 12 A 275 PRO ALA SER GLU THR PHE PRO PRO GLY MET PRO CYS TRP SEQRES 13 A 275 VAL THR GLY TRP GLY ASP VAL ASP ASN ASP GLU ARG LEU SEQRES 14 A 275 PRO PRO PRO PHE PRO LEU LYS GLN VAL LYS VAL PRO ILE SEQRES 15 A 275 MET GLU ASN HIS ILE CYS ASP ALA LYS TYR HIS LEU GLY SEQRES 16 A 275 ALA TYR THR GLY ASP ASP VAL ARG ILE VAL ARG ASP ASP SEQRES 17 A 275 MET LEU CYS ALA GLY ASN THR ARG ARG ASP SER CYS GLN SEQRES 18 A 275 GLY ASP SER GLY GLY PRO LEU VAL CYS LYS VAL ASN GLY SEQRES 19 A 275 THR TRP LEU GLN ALA GLY VAL VAL SER TRP GLY GLU GLY SEQRES 20 A 275 CYS ALA GLN PRO ASN ARG PRO GLY ILE TYR THR ARG VAL SEQRES 21 A 275 THR TYR TYR LEU ASP TRP ILE HIS HIS TYR VAL PRO LYS SEQRES 22 A 275 LYS PRO SEQRES 1 B 275 MET LEU ASN LEU LEU LEU LEU ALA LEU PRO VAL LEU ALA SEQRES 2 B 275 SER ARG ALA TYR ALA ALA PRO ALA PRO GLY GLN ALA LEU SEQRES 3 B 275 GLN ARG VAL GLY ILE VAL GLY GLY GLN GLU ALA PRO ARG SEQRES 4 B 275 SER LYS TRP PRO TRP GLN VAL SER LEU ARG VAL HIS GLY SEQRES 5 B 275 PRO TYR TRP MET HIS PHE CYS GLY GLY SER LEU ILE HIS SEQRES 6 B 275 PRO GLN TRP VAL LEU THR ALA ALA HIS CYS VAL GLY PRO SEQRES 7 B 275 ASP VAL LYS ASP LEU ALA ALA LEU ARG VAL GLN LEU ARG SEQRES 8 B 275 GLU GLN HIS LEU TYR TYR GLN ASP GLN LEU LEU PRO VAL SEQRES 9 B 275 SER ARG ILE ILE VAL HIS PRO GLN PHE TYR THR ALA GLN SEQRES 10 B 275 ILE GLY ALA ASP ILE ALA LEU LEU GLU LEU GLU GLU PRO SEQRES 11 B 275 VAL LYS VAL SER SER HIS VAL HIS THR VAL THR LEU PRO SEQRES 12 B 275 PRO ALA SER GLU THR PHE PRO PRO GLY MET PRO CYS TRP SEQRES 13 B 275 VAL THR GLY TRP GLY ASP VAL ASP ASN ASP GLU ARG LEU SEQRES 14 B 275 PRO PRO PRO PHE PRO LEU LYS GLN VAL LYS VAL PRO ILE SEQRES 15 B 275 MET GLU ASN HIS ILE CYS ASP ALA LYS TYR HIS LEU GLY SEQRES 16 B 275 ALA TYR THR GLY ASP ASP VAL ARG ILE VAL ARG ASP ASP SEQRES 17 B 275 MET LEU CYS ALA GLY ASN THR ARG ARG ASP SER CYS GLN SEQRES 18 B 275 GLY ASP SER GLY GLY PRO LEU VAL CYS LYS VAL ASN GLY SEQRES 19 B 275 THR TRP LEU GLN ALA GLY VAL VAL SER TRP GLY GLU GLY SEQRES 20 B 275 CYS ALA GLN PRO ASN ARG PRO GLY ILE TYR THR ARG VAL SEQRES 21 B 275 THR TYR TYR LEU ASP TRP ILE HIS HIS TYR VAL PRO LYS SEQRES 22 B 275 LYS PRO HET Y35 A 301 108 HET SO4 A 302 5 HET PGE A 303 10 HET SO4 B 301 5 HET SO4 B 302 5 HET MES B 303 12 HET PGE B 304 10 HETNAM Y35 (3'-{4-[3-(AMINOMETHYL)PHENYL]PIPERIDINE-1-CARBONYL}[1, HETNAM 2 Y35 1'-BIPHENYL]-3-YL){4-[3-(AMINOMETHYL)PHENYL]PIPERIDIN- HETNAM 3 Y35 1-YL}[3,4-DI(HYDROXY-KAPPAO)PHENYL]METHANONATO(2-) HETNAM 4 Y35 HYDROXYBORATE(1-) HETNAM SO4 SULFATE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 Y35 C44 H46 B N4 O5 1- FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 PGE 2(C6 H14 O4) FORMUL 8 MES C6 H13 N O4 S FORMUL 10 HOH *161(H2 O) HELIX 1 AA1 ALA A 72 GLY A 77 1 6 HELIX 2 AA2 ASP A 82 ALA A 84 5 3 HELIX 3 AA3 GLU A 184 LEU A 194 1 11 HELIX 4 AA4 VAL A 260 VAL A 271 1 12 HELIX 5 AA5 ALA B 72 VAL B 76 5 5 HELIX 6 AA6 ASP B 82 ALA B 84 5 3 HELIX 7 AA7 GLU B 184 LEU B 194 1 11 HELIX 8 AA8 VAL B 260 HIS B 269 1 10 SHEET 1 AA1 8 GLN A 35 GLU A 36 0 SHEET 2 AA1 8 LYS A 176 MET A 183 -1 O GLN A 177 N GLN A 35 SHEET 3 AA1 8 MET A 209 ALA A 212 -1 O CYS A 211 N MET A 183 SHEET 4 AA1 8 GLY A 255 ARG A 259 -1 O TYR A 257 N LEU A 210 SHEET 5 AA1 8 THR A 235 TRP A 244 -1 N TRP A 244 O ILE A 256 SHEET 6 AA1 8 PRO A 227 VAL A 232 -1 N VAL A 232 O THR A 235 SHEET 7 AA1 8 PRO A 154 GLY A 159 -1 N TRP A 156 O VAL A 229 SHEET 8 AA1 8 LYS A 176 MET A 183 -1 O VAL A 180 N CYS A 155 SHEET 1 AA2 6 LEU A 86 GLN A 89 0 SHEET 2 AA2 6 GLN A 45 VAL A 50 -1 N SER A 47 O GLN A 89 SHEET 3 AA2 6 MET A 56 HIS A 65 -1 O CYS A 59 N LEU A 48 SHEET 4 AA2 6 TRP A 68 THR A 71 -1 O LEU A 70 N SER A 62 SHEET 5 AA2 6 ALA A 123 LEU A 127 -1 O LEU A 125 N VAL A 69 SHEET 6 AA2 6 VAL A 104 VAL A 109 -1 N ILE A 108 O LEU A 124 SHEET 1 AA3 8 GLN B 35 GLU B 36 0 SHEET 2 AA3 8 LYS B 176 MET B 183 -1 O GLN B 177 N GLN B 35 SHEET 3 AA3 8 MET B 209 ALA B 212 -1 O CYS B 211 N MET B 183 SHEET 4 AA3 8 GLY B 255 ARG B 259 -1 O TYR B 257 N LEU B 210 SHEET 5 AA3 8 THR B 235 TRP B 244 -1 N TRP B 244 O ILE B 256 SHEET 6 AA3 8 PRO B 227 VAL B 232 -1 N CYS B 230 O LEU B 237 SHEET 7 AA3 8 PRO B 154 GLY B 159 -1 N TRP B 156 O VAL B 229 SHEET 8 AA3 8 LYS B 176 MET B 183 -1 O VAL B 180 N CYS B 155 SHEET 1 AA4 7 GLN B 45 VAL B 50 0 SHEET 2 AA4 7 MET B 56 HIS B 65 -1 O CYS B 59 N LEU B 48 SHEET 3 AA4 7 TRP B 68 THR B 71 -1 O LEU B 70 N SER B 62 SHEET 4 AA4 7 ALA B 123 LEU B 127 -1 O ALA B 123 N THR B 71 SHEET 5 AA4 7 LEU B 102 VAL B 109 -1 N ILE B 108 O LEU B 124 SHEET 6 AA4 7 LEU B 86 GLN B 89 -1 N VAL B 88 O LEU B 102 SHEET 7 AA4 7 GLN B 45 VAL B 50 -1 N ARG B 49 O ARG B 87 SSBOND 1 CYS A 59 CYS A 75 1555 1555 2.07 SSBOND 2 CYS A 155 CYS A 230 1555 1555 2.03 SSBOND 3 CYS A 188 CYS A 211 1555 1555 2.06 SSBOND 4 CYS A 220 CYS A 248 1555 1555 2.07 SSBOND 5 CYS B 59 CYS B 75 1555 1555 2.10 SSBOND 6 CYS B 155 CYS B 230 1555 1555 2.05 SSBOND 7 CYS B 188 CYS B 211 1555 1555 2.03 SSBOND 8 CYS B 220 CYS B 248 1555 1555 2.04 CISPEP 1 GLY A 77 PRO A 78 0 9.12 CISPEP 2 PRO A 171 PRO A 172 0 8.96 CISPEP 3 GLY B 77 PRO B 78 0 12.45 CISPEP 4 PRO B 171 PRO B 172 0 7.53 SITE 1 AC1 22 ASP A 218 SER A 219 GLN A 221 SER A 224 SITE 2 AC1 22 TRP A 244 GLY A 245 GLU A 246 GLY A 247 SITE 3 AC1 22 CYS A 248 SO4 A 302 PGE A 303 HOH A 433 SITE 4 AC1 22 GLN B 117 ASP B 218 SER B 219 CYS B 220 SITE 5 AC1 22 SER B 224 TRP B 244 GLY B 245 GLU B 246 SITE 6 AC1 22 GLY B 247 PGE B 304 SITE 1 AC2 6 HIS A 74 GLN A 221 GLY A 222 SER A 224 SITE 2 AC2 6 Y35 A 301 PGE A 303 SITE 1 AC3 8 HIS A 74 PRO A 78 PHE A 113 TYR A 114 SITE 2 AC3 8 ALA A 116 SER A 243 Y35 A 301 SO4 A 302 SITE 1 AC4 5 HIS B 74 GLN B 221 GLY B 222 SER B 224 SITE 2 AC4 5 PGE B 304 SITE 1 AC5 3 ASN B 214 THR B 215 ARG B 216 SITE 1 AC6 6 LYS A 132 SER A 134 ARG B 203 ARG B 206 SITE 2 AC6 6 ASP B 207 HOH B 455 SITE 1 AC7 9 Y35 A 301 HIS B 74 PRO B 78 TYR B 114 SITE 2 AC7 9 ALA B 116 SER B 243 TRP B 244 SO4 B 301 SITE 3 AC7 9 HOH B 428 CRYST1 78.099 78.099 165.182 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012804 0.007393 0.000000 0.00000 SCALE2 0.000000 0.014785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006054 0.00000