HEADER DNA BINDING PROTEIN/DNA 17-MAY-19 6P0S TITLE CRYSTAL STRUCTURE OF TERNARY DNA COMPLEX "FX2" CONTAINING E. COLI FIS TITLE 2 AND PHAGE LAMBDA XIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN FIS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FACTOR-FOR-INVERSION STIMULATION PROTEIN,HIN RECOMBINATIONAL COMPND 5 ENHANCER-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (27-MER), FX1-2; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (27-MER), FX1-2; COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: EXCISIONASE; COMPND 17 CHAIN: E; COMPND 18 FRAGMENT: RESIDUES 1-55; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: FIS, B3261, JW3229; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 14 ORGANISM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 18 ORGANISM_TAXID: 562; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE LAMBDA; SOURCE 21 ORGANISM_TAXID: 10710; SOURCE 22 GENE: XIS; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS PROTEIN-DNA TERNARY COMPLEX, DNA SHAPE, COOPERATIVE BINDING, DNA KEYWDS 2 BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.P.HANCOCK,D.CASCIO,R.C.JOHNSON REVDAT 4 11-OCT-23 6P0S 1 REMARK REVDAT 3 08-JAN-20 6P0S 1 JRNL REVDAT 2 01-JAN-20 6P0S 1 REMARK REVDAT 1 19-JUN-19 6P0S 0 JRNL AUTH S.P.HANCOCK,D.CASCIO,R.C.JOHNSON JRNL TITL COOPERATIVE DNA BINDING BY PROTEINS THROUGH DNA SHAPE JRNL TITL 2 COMPLEMENTARITY. JRNL REF NUCLEIC ACIDS RES. V. 47 8874 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31616952 JRNL DOI 10.1093/NAR/GKZ642 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 23762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1145 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.69 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 476 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.4329 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 451 REMARK 3 BIN R VALUE (WORKING SET) : 0.4363 REMARK 3 BIN FREE R VALUE : 0.3728 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.25 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 25 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1727 REMARK 3 NUCLEIC ACID ATOMS : 1101 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86630 REMARK 3 B22 (A**2) : 0.86630 REMARK 3 B33 (A**2) : -1.73260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.308 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.222 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.293 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.218 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2992 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4268 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 915 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 349 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2992 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 384 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3080 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.35 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.21 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 16.5642 -32.8865 -11.5002 REMARK 3 T TENSOR REMARK 3 T11: 0.0751 T22: 0.0395 REMARK 3 T33: -0.1948 T12: -0.1435 REMARK 3 T13: -0.0232 T23: 0.0745 REMARK 3 L TENSOR REMARK 3 L11: 6.1891 L22: 3.0101 REMARK 3 L33: 3.5339 L12: 2.1677 REMARK 3 L13: 0.7902 L23: -0.1320 REMARK 3 S TENSOR REMARK 3 S11: -0.0968 S12: 0.7610 S13: 0.2156 REMARK 3 S21: -0.3329 S22: 0.0616 S23: -0.2014 REMARK 3 S31: -0.3916 S32: 0.6418 S33: 0.0352 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 25.3158 -33.5513 -8.8012 REMARK 3 T TENSOR REMARK 3 T11: -0.0579 T22: 0.1748 REMARK 3 T33: -0.1487 T12: -0.1931 REMARK 3 T13: -0.0095 T23: 0.1082 REMARK 3 L TENSOR REMARK 3 L11: 7.0935 L22: 3.2616 REMARK 3 L33: 4.8840 L12: 3.2503 REMARK 3 L13: 2.7829 L23: 1.8851 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: 0.7262 S13: -0.0876 REMARK 3 S21: -0.1492 S22: 0.0502 S23: -0.4736 REMARK 3 S31: -0.2721 S32: 0.9161 S33: 0.0188 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.5300 -31.7735 7.9788 REMARK 3 T TENSOR REMARK 3 T11: -0.0257 T22: 0.0065 REMARK 3 T33: -0.1172 T12: -0.1844 REMARK 3 T13: -0.0678 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.0348 L22: 2.1162 REMARK 3 L33: 1.6867 L12: 1.2982 REMARK 3 L13: -0.2456 L23: -0.7717 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: -0.9744 S13: 0.2567 REMARK 3 S21: -0.0632 S22: -0.3836 S23: 0.0342 REMARK 3 S31: -0.4256 S32: 0.1004 S33: 0.3598 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.8561 -32.6147 8.1982 REMARK 3 T TENSOR REMARK 3 T11: -0.0025 T22: -0.0633 REMARK 3 T33: -0.1393 T12: -0.1941 REMARK 3 T13: -0.0955 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.6641 L22: 1.1483 REMARK 3 L33: 2.0157 L12: -0.1797 REMARK 3 L13: -0.5556 L23: -1.0593 REMARK 3 S TENSOR REMARK 3 S11: 0.0427 S12: -0.8326 S13: 0.4847 REMARK 3 S21: 0.0664 S22: -0.3406 S23: 0.0142 REMARK 3 S31: -0.4479 S32: 0.2209 S33: 0.2978 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { E|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.1422 -54.2338 8.6867 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: -0.0108 REMARK 3 T33: -0.0245 T12: -0.1026 REMARK 3 T13: -0.0104 T23: 0.0897 REMARK 3 L TENSOR REMARK 3 L11: 4.1369 L22: 6.6693 REMARK 3 L33: 7.4415 L12: -1.3463 REMARK 3 L13: 1.9515 L23: -0.6389 REMARK 3 S TENSOR REMARK 3 S11: 0.1323 S12: -0.1857 S13: -0.4533 REMARK 3 S21: 0.0675 S22: 0.0396 S23: 0.5842 REMARK 3 S31: 0.5075 S32: 0.0369 S33: -0.1719 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97170 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23763 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 87.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 9.347 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.57 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.2 REMARK 200 STARTING MODEL: 6P0T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.21500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.83500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.82250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.83500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.60750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.83500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.83500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 112.82250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.83500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.83500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.60750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.21500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 ARG A 5 REMARK 465 VAL A 6 REMARK 465 ASN A 7 REMARK 465 THR A 15 REMARK 465 VAL A 16 REMARK 465 ASN A 17 REMARK 465 SER A 18 REMARK 465 GLN A 19 REMARK 465 ASP A 20 REMARK 465 GLN A 21 REMARK 465 VAL A 22 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 ARG B 5 REMARK 465 VAL B 6 REMARK 465 ASN B 7 REMARK 465 SER B 8 REMARK 465 VAL B 16 REMARK 465 ASN B 17 REMARK 465 SER B 18 REMARK 465 GLN B 19 REMARK 465 ASP B 20 REMARK 465 GLN B 21 REMARK 465 VAL B 22 REMARK 465 THR B 23 REMARK 465 ASN E 53 REMARK 465 ARG E 54 REMARK 465 PRO E 55 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 14 OG REMARK 470 GLN A 33 CG CD OE1 NE2 REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 ASN A 43 CG OD1 ND2 REMARK 470 ASP A 46 CG OD1 OD2 REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLN B 24 CG CD OE1 NE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 GLN B 45 CG CD OE1 NE2 REMARK 470 ASN B 48 CG OD1 ND2 REMARK 470 ARG E 13 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 17 O3' DC C 17 C3' -0.043 REMARK 500 DG C 19 O3' DG C 19 C3' -0.046 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC C 17 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 19 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 24 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 8 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC D 9 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 42 67.14 -110.40 REMARK 500 ASP A 49 27.54 -143.91 REMARK 500 SER B 14 150.17 -46.69 REMARK 500 LEU B 42 74.75 -68.03 REMARK 500 ASN B 48 -15.25 -143.46 REMARK 500 MET B 97 48.79 -90.65 REMARK 500 REMARK 500 REMARK: NULL DBREF 6P0S A 1 98 UNP P0A6R3 FIS_ECOLI 1 98 DBREF 6P0S B 1 98 UNP P0A6R3 FIS_ECOLI 1 98 DBREF 6P0S C 1 27 PDB 6P0S 6P0S 1 27 DBREF 6P0S D 1 27 PDB 6P0S 6P0S 1 27 DBREF 6P0S E 1 55 UNP P03699 VXIS_LAMBD 1 55 SEQADV 6P0S SER E 28 UNP P03699 CYS 28 CONFLICT SEQRES 1 A 98 MET PHE GLU GLN ARG VAL ASN SER ASP VAL LEU THR VAL SEQRES 2 A 98 SER THR VAL ASN SER GLN ASP GLN VAL THR GLN LYS PRO SEQRES 3 A 98 LEU ARG ASP SER VAL LYS GLN ALA LEU LYS ASN TYR PHE SEQRES 4 A 98 ALA GLN LEU ASN GLY GLN ASP VAL ASN ASP LEU TYR GLU SEQRES 5 A 98 LEU VAL LEU ALA GLU VAL GLU GLN PRO LEU LEU ASP MET SEQRES 6 A 98 VAL MET GLN TYR THR ARG GLY ASN GLN THR ARG ALA ALA SEQRES 7 A 98 LEU MET MET GLY ILE ASN ARG GLY THR LEU ARG LYS LYS SEQRES 8 A 98 LEU LYS LYS TYR GLY MET ASN SEQRES 1 B 98 MET PHE GLU GLN ARG VAL ASN SER ASP VAL LEU THR VAL SEQRES 2 B 98 SER THR VAL ASN SER GLN ASP GLN VAL THR GLN LYS PRO SEQRES 3 B 98 LEU ARG ASP SER VAL LYS GLN ALA LEU LYS ASN TYR PHE SEQRES 4 B 98 ALA GLN LEU ASN GLY GLN ASP VAL ASN ASP LEU TYR GLU SEQRES 5 B 98 LEU VAL LEU ALA GLU VAL GLU GLN PRO LEU LEU ASP MET SEQRES 6 B 98 VAL MET GLN TYR THR ARG GLY ASN GLN THR ARG ALA ALA SEQRES 7 B 98 LEU MET MET GLY ILE ASN ARG GLY THR LEU ARG LYS LYS SEQRES 8 B 98 LEU LYS LYS TYR GLY MET ASN SEQRES 1 C 27 DA DA DT DT DT DT DG DC DA DT DA DA DA SEQRES 2 C 27 DA DA DA DC DA DG DA DC DT DA DC DA DT SEQRES 3 C 27 DT SEQRES 1 D 27 DA DA DT DG DT DA DG DT DC DT DG DT DT SEQRES 2 D 27 DT DT DT DT DA DT DG DC DA DA DA DA DT SEQRES 3 D 27 DT SEQRES 1 E 55 MET TYR LEU THR LEU GLN GLU TRP ASN ALA ARG GLN ARG SEQRES 2 E 55 ARG PRO ARG SER LEU GLU THR VAL ARG ARG TRP VAL ARG SEQRES 3 E 55 GLU SER ARG ILE PHE PRO PRO PRO VAL LYS ASP GLY ARG SEQRES 4 E 55 GLU TYR LEU PHE HIS GLU SER ALA VAL LYS VAL ASP LEU SEQRES 5 E 55 ASN ARG PRO FORMUL 6 HOH *58(H2 O) HELIX 1 AA1 LEU A 27 GLN A 41 1 15 HELIX 2 AA2 ASP A 49 THR A 70 1 22 HELIX 3 AA3 ASN A 73 GLY A 82 1 10 HELIX 4 AA4 ASN A 84 TYR A 95 1 12 HELIX 5 AA5 LEU B 27 LEU B 42 1 16 HELIX 6 AA6 ASP B 49 THR B 70 1 22 HELIX 7 AA7 ASN B 73 GLY B 82 1 10 HELIX 8 AA8 ASN B 84 TYR B 95 1 12 HELIX 9 AA9 THR E 4 ARG E 11 1 8 HELIX 10 AB1 SER E 17 GLU E 27 1 11 SHEET 1 AA1 2 THR A 12 VAL A 13 0 SHEET 2 AA1 2 LYS A 25 PRO A 26 -1 O LYS A 25 N VAL A 13 SHEET 1 AA2 2 THR B 12 VAL B 13 0 SHEET 2 AA2 2 LYS B 25 PRO B 26 -1 O LYS B 25 N VAL B 13 SHEET 1 AA3 3 TYR E 2 LEU E 3 0 SHEET 2 AA3 3 GLU E 40 HIS E 44 -1 O PHE E 43 N LEU E 3 SHEET 3 AA3 3 VAL E 35 ASP E 37 -1 N ASP E 37 O GLU E 40 SHEET 1 AA4 2 ILE E 30 PHE E 31 0 SHEET 2 AA4 2 VAL E 48 LYS E 49 -1 O VAL E 48 N PHE E 31 CISPEP 1 PHE E 31 PRO E 32 0 -3.40 CRYST1 107.670 107.670 150.430 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009288 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006648 0.00000