HEADER GENE REGULATION 19-MAY-19 6P1B TITLE TRANSCRIPTION ANTITERMINATION FACTOR Q21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: Q PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHAGE 21; SOURCE 3 ORGANISM_TAXID: 10743; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET21A KEYWDS RNA POLYMERASE, DNA BINDING, TRANSCRIPTION, Q-DEPENDENT KEYWDS 2 ANTITERMINATION, Q ANTITERMINATION FACTOR, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR Z.YIN,R.H.EBRIGHT REVDAT 5 11-OCT-23 6P1B 1 REMARK REVDAT 4 18-DEC-19 6P1B 1 REMARK REVDAT 3 25-SEP-19 6P1B 1 JRNL REVDAT 2 11-SEP-19 6P1B 1 JRNL REVDAT 1 26-JUN-19 6P1B 0 JRNL AUTH Z.YIN,J.T.KAELBER,R.H.EBRIGHT JRNL TITL STRUCTURAL BASIS OF Q-DEPENDENT ANTITERMINATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 18384 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31455742 JRNL DOI 10.1073/PNAS.1909801116 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 23761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4606 - 4.6775 0.99 1648 156 0.1809 0.2041 REMARK 3 2 4.6775 - 3.7136 0.99 1664 153 0.1511 0.1853 REMARK 3 3 3.7136 - 3.2444 0.98 1590 144 0.1752 0.2183 REMARK 3 4 3.2444 - 2.9479 0.99 1624 146 0.1851 0.2469 REMARK 3 5 2.9479 - 2.7366 0.97 1595 146 0.1944 0.2295 REMARK 3 6 2.7366 - 2.5753 0.99 1640 145 0.1815 0.2261 REMARK 3 7 2.5753 - 2.4464 0.99 1599 155 0.1858 0.2326 REMARK 3 8 2.4464 - 2.3399 0.99 1614 150 0.1843 0.2207 REMARK 3 9 2.3399 - 2.2498 0.97 1607 139 0.1933 0.2657 REMARK 3 10 2.2498 - 2.1722 0.98 1575 142 0.1979 0.2251 REMARK 3 11 2.1722 - 2.1043 0.98 1614 156 0.2065 0.2470 REMARK 3 12 2.1043 - 2.0441 0.97 1547 154 0.2248 0.2876 REMARK 3 13 2.0441 - 1.9903 0.89 1464 127 0.2305 0.2729 REMARK 3 14 1.9903 - 1.9418 0.59 984 83 0.2291 0.2616 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6221 -2.4234 -4.5554 REMARK 3 T TENSOR REMARK 3 T11: 0.2056 T22: 0.1078 REMARK 3 T33: 0.1283 T12: 0.0186 REMARK 3 T13: 0.0033 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.2087 L22: 5.6442 REMARK 3 L33: 2.3275 L12: -1.4625 REMARK 3 L13: -1.1395 L23: 3.0225 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: 0.0722 S13: 0.0305 REMARK 3 S21: -0.8922 S22: -0.1452 S23: -0.0640 REMARK 3 S31: -0.0821 S32: 0.0725 S33: -0.0560 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7837 -5.4123 11.2133 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.0868 REMARK 3 T33: 0.0991 T12: -0.0508 REMARK 3 T13: -0.0036 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.8619 L22: 3.4081 REMARK 3 L33: 5.3657 L12: 0.1283 REMARK 3 L13: -1.0838 L23: -0.1907 REMARK 3 S TENSOR REMARK 3 S11: 0.0530 S12: -0.1017 S13: 0.1030 REMARK 3 S21: 0.3016 S22: -0.0001 S23: -0.2125 REMARK 3 S31: -0.0193 S32: 0.1399 S33: -0.0192 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5391 -14.6644 19.5443 REMARK 3 T TENSOR REMARK 3 T11: 0.4190 T22: 0.3133 REMARK 3 T33: 0.3068 T12: -0.1647 REMARK 3 T13: 0.0193 T23: 0.1058 REMARK 3 L TENSOR REMARK 3 L11: 2.0763 L22: 4.0100 REMARK 3 L33: 3.0844 L12: -1.7875 REMARK 3 L13: 1.4290 L23: 1.0482 REMARK 3 S TENSOR REMARK 3 S11: 0.0556 S12: -0.4042 S13: -0.5297 REMARK 3 S21: 0.7721 S22: 0.0611 S23: 0.8016 REMARK 3 S31: 0.2904 S32: -0.4500 S33: -0.0397 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5703 -19.0411 18.3409 REMARK 3 T TENSOR REMARK 3 T11: 0.6323 T22: 0.3313 REMARK 3 T33: 0.4495 T12: 0.0118 REMARK 3 T13: -0.0210 T23: 0.2145 REMARK 3 L TENSOR REMARK 3 L11: 0.3228 L22: 0.7483 REMARK 3 L33: 3.1608 L12: 0.1331 REMARK 3 L13: 1.0039 L23: 0.2515 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: -0.6670 S13: -0.7225 REMARK 3 S21: 0.5011 S22: -0.0702 S23: 0.0861 REMARK 3 S31: 0.5053 S32: 0.1297 S33: -0.0425 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2568 -3.1976 17.1239 REMARK 3 T TENSOR REMARK 3 T11: 0.3091 T22: 0.3149 REMARK 3 T33: 0.2832 T12: -0.0549 REMARK 3 T13: -0.1126 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.0931 L22: 5.3216 REMARK 3 L33: 2.0893 L12: 1.9026 REMARK 3 L13: -0.6724 L23: 0.6647 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.8401 S13: -0.4245 REMARK 3 S21: 0.8953 S22: -0.0151 S23: -0.9253 REMARK 3 S31: -0.0159 S32: 0.3236 S33: 0.0088 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1361 -9.6707 11.5221 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.2421 REMARK 3 T33: 0.1734 T12: -0.1138 REMARK 3 T13: 0.0275 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.5197 L22: 2.5264 REMARK 3 L33: 2.6361 L12: -0.5566 REMARK 3 L13: 0.6596 L23: 1.9323 REMARK 3 S TENSOR REMARK 3 S11: 0.1338 S12: -0.5033 S13: -0.2342 REMARK 3 S21: 0.3223 S22: -0.1057 S23: 0.3082 REMARK 3 S31: 0.1995 S32: -0.2387 S33: 0.4022 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8271 -17.0780 6.1839 REMARK 3 T TENSOR REMARK 3 T11: 0.2018 T22: 0.1042 REMARK 3 T33: 0.2333 T12: 0.0345 REMARK 3 T13: -0.0526 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.9842 L22: 0.2837 REMARK 3 L33: 2.4763 L12: 0.1436 REMARK 3 L13: -1.3439 L23: 0.5545 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.1275 S13: -0.3580 REMARK 3 S21: 0.0094 S22: 0.0299 S23: 0.0767 REMARK 3 S31: 0.4543 S32: 0.2999 S33: -0.0236 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0947 -31.0911 -3.7615 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.1997 REMARK 3 T33: 0.2399 T12: 0.1006 REMARK 3 T13: -0.0475 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 6.6548 L22: 2.4518 REMARK 3 L33: 2.2317 L12: 2.9640 REMARK 3 L13: 1.6526 L23: 2.1543 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: 0.4141 S13: 0.1712 REMARK 3 S21: 0.0198 S22: -0.1623 S23: 0.2902 REMARK 3 S31: -0.1256 S32: -0.1666 S33: -0.0085 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4871 -31.3675 -9.8087 REMARK 3 T TENSOR REMARK 3 T11: 0.3394 T22: 0.1547 REMARK 3 T33: 0.2417 T12: 0.0271 REMARK 3 T13: 0.0613 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 1.6864 L22: 3.0503 REMARK 3 L33: 1.2310 L12: 0.7720 REMARK 3 L13: 0.2611 L23: 1.7948 REMARK 3 S TENSOR REMARK 3 S11: -0.1489 S12: 0.1278 S13: 0.1331 REMARK 3 S21: -0.9415 S22: 0.1517 S23: -0.4619 REMARK 3 S31: -0.2731 S32: 0.2375 S33: 0.0468 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 123 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4646 -9.9394 0.3303 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: 0.1166 REMARK 3 T33: 0.0903 T12: 0.0016 REMARK 3 T13: -0.0257 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 4.1425 L22: 2.9068 REMARK 3 L33: 2.3060 L12: -1.9204 REMARK 3 L13: -0.3336 L23: 0.5074 REMARK 3 S TENSOR REMARK 3 S11: 0.1692 S12: 0.0048 S13: -0.0798 REMARK 3 S21: -0.2063 S22: -0.1589 S23: 0.1906 REMARK 3 S31: 0.0658 S32: -0.2297 S33: 0.0381 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3203 -43.0015 25.8510 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.1632 REMARK 3 T33: 0.0835 T12: 0.0663 REMARK 3 T13: 0.0208 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.6598 L22: 3.1427 REMARK 3 L33: 4.3280 L12: 0.8721 REMARK 3 L13: -0.6803 L23: 0.0467 REMARK 3 S TENSOR REMARK 3 S11: -0.0844 S12: -0.0526 S13: -0.2263 REMARK 3 S21: 0.0342 S22: -0.0316 S23: 0.0289 REMARK 3 S31: 0.0985 S32: 0.0119 S33: 0.0682 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6591 -29.4945 15.2152 REMARK 3 T TENSOR REMARK 3 T11: 0.5316 T22: 0.3769 REMARK 3 T33: 0.1833 T12: 0.1402 REMARK 3 T13: 0.0135 T23: 0.0728 REMARK 3 L TENSOR REMARK 3 L11: 5.9915 L22: 5.7272 REMARK 3 L33: 3.2054 L12: 0.9339 REMARK 3 L13: -3.6809 L23: -2.7563 REMARK 3 S TENSOR REMARK 3 S11: -0.1620 S12: 0.9877 S13: 0.2758 REMARK 3 S21: -0.8473 S22: 0.1278 S23: 0.1973 REMARK 3 S31: -0.2055 S32: -0.3799 S33: -0.2826 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8150 -39.5031 17.8967 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.3535 REMARK 3 T33: 0.1501 T12: 0.0670 REMARK 3 T13: 0.0044 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 2.7505 L22: 4.2432 REMARK 3 L33: 1.8961 L12: -0.4646 REMARK 3 L13: -0.5327 L23: 0.9016 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: 0.6861 S13: 0.2348 REMARK 3 S21: -0.4688 S22: -0.0278 S23: -0.1647 REMARK 3 S31: 0.0658 S32: -0.2918 S33: -0.0989 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1487 -31.6771 25.8855 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1437 REMARK 3 T33: 0.1584 T12: 0.0665 REMARK 3 T13: 0.0224 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 4.0613 L22: 3.8679 REMARK 3 L33: 2.8414 L12: -0.6830 REMARK 3 L13: 0.3035 L23: 0.2737 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.0592 S13: 0.3802 REMARK 3 S21: -0.2313 S22: 0.1318 S23: 0.0211 REMARK 3 S31: -0.2304 S32: 0.0133 S33: 0.0039 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5518 -22.7155 33.4425 REMARK 3 T TENSOR REMARK 3 T11: 0.1425 T22: 0.2381 REMARK 3 T33: 0.2561 T12: -0.0009 REMARK 3 T13: 0.0206 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 3.3784 L22: 6.8131 REMARK 3 L33: 8.5344 L12: -1.0484 REMARK 3 L13: -0.5272 L23: 5.6428 REMARK 3 S TENSOR REMARK 3 S11: -0.3180 S12: 0.0242 S13: 0.0177 REMARK 3 S21: -0.0591 S22: 0.3628 S23: 0.1463 REMARK 3 S31: -0.3558 S32: 0.5947 S33: 0.0344 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3896 -16.4779 44.1630 REMARK 3 T TENSOR REMARK 3 T11: 0.3317 T22: 0.2592 REMARK 3 T33: 0.3296 T12: 0.1335 REMARK 3 T13: -0.0923 T23: -0.0494 REMARK 3 L TENSOR REMARK 3 L11: 1.3929 L22: 2.5627 REMARK 3 L33: 0.4693 L12: 0.9785 REMARK 3 L13: -0.2021 L23: -1.0502 REMARK 3 S TENSOR REMARK 3 S11: -0.1933 S12: -0.1705 S13: -0.3054 REMARK 3 S21: 0.7177 S22: 0.3525 S23: -0.2840 REMARK 3 S31: 0.3645 S32: 0.7181 S33: 0.2434 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7437 -37.9167 32.3708 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.2110 REMARK 3 T33: 0.1271 T12: 0.0442 REMARK 3 T13: 0.0540 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 4.6415 L22: 2.5769 REMARK 3 L33: 1.8667 L12: 1.4588 REMARK 3 L13: -0.6144 L23: 0.3272 REMARK 3 S TENSOR REMARK 3 S11: -0.1076 S12: -0.0935 S13: -0.0596 REMARK 3 S21: 0.0896 S22: -0.0284 S23: 0.0974 REMARK 3 S31: 0.1955 S32: -0.3106 S33: 0.1147 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 7 THROUGH 13 OR RESID REMARK 3 15 THROUGH 47 OR RESID 53 THROUGH 98 OR REMARK 3 RESID 100 THROUGH 110 OR (RESID 111 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 112 OR (RESID 113 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 114 THROUGH 124 OR REMARK 3 RESID 126 THROUGH 139 OR RESID 141 REMARK 3 THROUGH 155 OR (RESID 156 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB ))) REMARK 3 ) REMARK 3 SELECTION : (CHAIN B AND (RESID 7 THROUGH 13 OR RESID REMARK 3 15 THROUGH 98 OR RESID 100 THROUGH 124 OR REMARK 3 RESID 126 THROUGH 139 OR RESID 141 REMARK 3 THROUGH 153 OR (RESID 154 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 155 THROUGH 156)) REMARK 3 ATOM PAIRS NUMBER : 1317 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P1B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000240885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24533 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6P1C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200 MM AMMONIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.45250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLY A 2 REMARK 465 ILE A 3 REMARK 465 ARG A 4 REMARK 465 GLU A 5 REMARK 465 LEU A 6 REMARK 465 LYS A 157 REMARK 465 ILE A 158 REMARK 465 LYS A 159 REMARK 465 HIS A 160 REMARK 465 VAL A 161 REMARK 465 ALA A 162 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ILE B 3 REMARK 465 ARG B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 48 REMARK 465 PRO B 49 REMARK 465 GLY B 50 REMARK 465 ARG B 51 REMARK 465 VAL B 52 REMARK 465 LYS B 157 REMARK 465 ILE B 158 REMARK 465 LYS B 159 REMARK 465 HIS B 160 REMARK 465 VAL B 161 REMARK 465 ALA B 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 51 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 111 CG CD1 CD2 REMARK 470 ARG B 113 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 109.18 -168.17 REMARK 500 SER B 37 109.72 -165.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 208 DBREF 6P1B A 2 162 UNP Q9XJQ6 Q9XJQ6_9CAUD 2 161 DBREF 6P1B B 2 162 UNP Q9XJQ6 Q9XJQ6_9CAUD 2 161 SEQADV 6P1B SER A 1 UNP Q9XJQ6 EXPRESSION TAG SEQADV 6P1B GLY A 24 UNP Q9XJQ6 INSERTION SEQADV 6P1B TRP A 26 UNP Q9XJQ6 HIS 25 CONFLICT SEQADV 6P1B VAL A 27 UNP Q9XJQ6 GLY 26 CONFLICT SEQADV 6P1B TYR A 28 UNP Q9XJQ6 LEU 27 CONFLICT SEQADV 6P1B VAL A 47 UNP Q9XJQ6 ILE 46 CONFLICT SEQADV 6P1B SER B 1 UNP Q9XJQ6 EXPRESSION TAG SEQADV 6P1B GLY B 24 UNP Q9XJQ6 INSERTION SEQADV 6P1B TRP B 26 UNP Q9XJQ6 HIS 25 CONFLICT SEQADV 6P1B VAL B 27 UNP Q9XJQ6 GLY 26 CONFLICT SEQADV 6P1B TYR B 28 UNP Q9XJQ6 LEU 27 CONFLICT SEQADV 6P1B VAL B 47 UNP Q9XJQ6 ILE 46 CONFLICT SEQRES 1 A 162 SER GLY ILE ARG GLU LEU ASN LEU THR LYS GLU GLN HIS SEQRES 2 A 162 GLU TRP LEU ASN GLY TRP LEU GLU LEU TRP GLY ALA TRP SEQRES 3 A 162 VAL TYR SER GLY ARG LEU GLU LYS ARG MET SER SER VAL SEQRES 4 A 162 ILE ALA LYS PHE MET GLU SER VAL GLU PRO GLY ARG VAL SEQRES 5 A 162 MET THR ARG PRO MET CYS ASN ASP ASP ASP GLY MET LEU SEQRES 6 A 162 ILE SER GLN VAL VAL ASP SER VAL MET TYR ILE ASP LYS SEQRES 7 A 162 LYS ALA PHE GLY ILE LEU LEU SER TYR TYR ALA HIS GLY SEQRES 8 A 162 SER SER LYS HIS ALA ILE ALA SER TYR TYR HIS ARG VAL SEQRES 9 A 162 ALA ARG PRO ARG LYS MET LEU CYS ARG GLY GLY GLY ARG SEQRES 10 A 162 ILE GLN LYS PRO SER LEU ALA THR CYS ARG ARG GLU VAL SEQRES 11 A 162 ASP GLU ILE LEU ASN ALA SER LEU PHE MET ILE TYR PRO SEQRES 12 A 162 VAL LEU ASP SER ALA PHE LYS ASN ARG LYS ARG VAL GLU SEQRES 13 A 162 LYS ILE LYS HIS VAL ALA SEQRES 1 B 162 SER GLY ILE ARG GLU LEU ASN LEU THR LYS GLU GLN HIS SEQRES 2 B 162 GLU TRP LEU ASN GLY TRP LEU GLU LEU TRP GLY ALA TRP SEQRES 3 B 162 VAL TYR SER GLY ARG LEU GLU LYS ARG MET SER SER VAL SEQRES 4 B 162 ILE ALA LYS PHE MET GLU SER VAL GLU PRO GLY ARG VAL SEQRES 5 B 162 MET THR ARG PRO MET CYS ASN ASP ASP ASP GLY MET LEU SEQRES 6 B 162 ILE SER GLN VAL VAL ASP SER VAL MET TYR ILE ASP LYS SEQRES 7 B 162 LYS ALA PHE GLY ILE LEU LEU SER TYR TYR ALA HIS GLY SEQRES 8 B 162 SER SER LYS HIS ALA ILE ALA SER TYR TYR HIS ARG VAL SEQRES 9 B 162 ALA ARG PRO ARG LYS MET LEU CYS ARG GLY GLY GLY ARG SEQRES 10 B 162 ILE GLN LYS PRO SER LEU ALA THR CYS ARG ARG GLU VAL SEQRES 11 B 162 ASP GLU ILE LEU ASN ALA SER LEU PHE MET ILE TYR PRO SEQRES 12 B 162 VAL LEU ASP SER ALA PHE LYS ASN ARG LYS ARG VAL GLU SEQRES 13 B 162 LYS ILE LYS HIS VAL ALA HET CL A 201 1 HET CL A 202 1 HET CL A 203 1 HET CL A 204 1 HET EDO A 205 10 HET CL B 201 1 HET CL B 202 1 HET CL B 203 1 HET CL B 204 1 HET CL B 205 1 HET EDO B 206 10 HET EDO B 207 10 HET EDO B 208 10 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 9(CL 1-) FORMUL 7 EDO 4(C2 H6 O2) FORMUL 16 HOH *158(H2 O) HELIX 1 AA1 THR A 9 SER A 29 1 21 HELIX 2 AA2 GLU A 33 MET A 36 5 4 HELIX 3 AA3 SER A 37 SER A 46 1 10 HELIX 4 AA4 ASN A 59 TYR A 75 1 17 HELIX 5 AA5 ASP A 77 ALA A 89 1 13 HELIX 6 AA6 SER A 93 ALA A 105 1 13 HELIX 7 AA7 SER A 122 GLU A 156 1 35 HELIX 8 AA8 THR B 9 SER B 29 1 21 HELIX 9 AA9 GLU B 33 MET B 36 5 4 HELIX 10 AB1 SER B 37 VAL B 47 1 11 HELIX 11 AB2 ASN B 59 TYR B 75 1 17 HELIX 12 AB3 ASP B 77 ALA B 89 1 13 HELIX 13 AB4 SER B 93 ALA B 105 1 13 HELIX 14 AB5 SER B 122 GLU B 156 1 35 SHEET 1 AA1 2 ARG A 108 CYS A 112 0 SHEET 2 AA1 2 GLY A 115 GLN A 119 -1 O ARG A 117 N MET A 110 SHEET 1 AA2 2 ARG B 108 CYS B 112 0 SHEET 2 AA2 2 GLY B 115 GLN B 119 -1 O ARG B 117 N MET B 110 SITE 1 AC1 2 SER A 122 THR A 125 SITE 1 AC2 3 MET A 53 THR A 54 ARG A 55 SITE 1 AC3 1 LYS A 109 SITE 1 AC4 2 TRP A 15 TRP A 19 SITE 1 AC5 3 LYS A 79 TYR A 101 GLU A 129 SITE 1 AC6 3 PRO B 121 SER B 122 THR B 125 SITE 1 AC7 2 ARG B 127 SER B 147 SITE 1 AC8 2 GLU B 11 EDO B 207 SITE 1 AC9 2 TRP B 15 TRP B 19 SITE 1 AD1 2 LEU B 6 ASN B 7 SITE 1 AD2 1 CL B 203 SITE 1 AD3 4 TRP B 15 TYR B 142 ASP B 146 LYS B 150 CRYST1 32.233 78.905 68.497 90.00 98.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031024 0.000000 0.004736 0.00000 SCALE2 0.000000 0.012673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014768 0.00000