HEADER LYASE 20-MAY-19 6P1Y TITLE CRYSTAL STRUCTURE OF MTB ASPARTATE DECARBOXYLASE MUTANT M117I COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE 1-DECARBOXYLASE BETA CHAIN; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.1.11; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ASPARTATE 1-DECARBOXYLASE ALPHA CHAIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ASPARTATE ALPHA-DECARBOXYLASE; COMPND 10 EC: 4.1.1.11; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: PAND, RV3601C, MTCY07H7B.21; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 11 H37RV); SOURCE 12 ORGANISM_TAXID: 83332; SOURCE 13 STRAIN: ATCC 25618 / H37RV; SOURCE 14 GENE: PAND, RV3601C, MTCY07H7B.21; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STRUCTURAL GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, LYASE, KEYWDS 2 POA, DRUG-RESISTANCE, MUTANT EXPDTA X-RAY DIFFRACTION AUTHOR Q.SUN,X.LI,J.C.SACCHETTINI,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 3 15-NOV-23 6P1Y 1 LINK ATOM REVDAT 2 11-OCT-23 6P1Y 1 REMARK REVDAT 1 05-FEB-20 6P1Y 0 JRNL AUTH Q.SUN,X.LI,L.M.PEREZ,W.SHI,Y.ZHANG,J.C.SACCHETTINI JRNL TITL THE MOLECULAR BASIS OF PYRAZINAMIDE ACTIVITY ON JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS PAND. JRNL REF NAT COMMUN V. 11 339 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 31953389 JRNL DOI 10.1038/S41467-019-14238-3 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 6634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5100 - 2.9349 1.00 3231 175 0.1711 0.1926 REMARK 3 2 2.9349 - 2.3300 0.99 3073 155 0.1836 0.2360 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -27.8584 -22.3682 -18.0447 REMARK 3 T TENSOR REMARK 3 T11: 0.2657 T22: 0.2690 REMARK 3 T33: 0.2976 T12: -0.0291 REMARK 3 T13: 0.0097 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.8270 L22: 1.2537 REMARK 3 L33: 1.4583 L12: 0.4312 REMARK 3 L13: 0.2444 L23: -0.4411 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: -0.0075 S13: 0.1033 REMARK 3 S21: 0.0259 S22: 0.0340 S23: -0.0591 REMARK 3 S31: -0.1810 S32: 0.0990 S33: -0.0325 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 6.5-7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6635 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 36.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2C45 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM TARTRATE DIBASIC, PEG 3350, REMARK 280 PH 6.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 36.50550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 36.50550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 54.76500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 36.50550 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 36.50550 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 54.76500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 36.50550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 36.50550 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 54.76500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 36.50550 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 36.50550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 54.76500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 36.50550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 36.50550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 54.76500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 36.50550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 36.50550 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 54.76500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 36.50550 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 36.50550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 54.76500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 36.50550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 36.50550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 54.76500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -73.01100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -73.01100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -73.01100 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -73.01100 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 127 REMARK 465 ALA B 128 REMARK 465 GLY B 129 REMARK 465 GLU B 130 REMARK 465 LEU B 131 REMARK 465 LEU B 132 REMARK 465 ASP B 133 REMARK 465 PRO B 134 REMARK 465 ARG B 135 REMARK 465 LEU B 136 REMARK 465 GLY B 137 REMARK 465 VAL B 138 REMARK 465 GLY B 139 REMARK 465 LEU B 140 REMARK 465 GLU B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 22 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PYR B 25 CA - C - N ANGL. DEV. = -18.0 DEGREES REMARK 500 VAL B 26 C - N - CA ANGL. DEV. = -20.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 57 -157.56 -149.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PYR B 25 20.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA B 201 DBREF 6P1Y A 1 24 UNP P9WIL3 PAND_MYCTU 1 24 DBREF 6P1Y B 25 139 UNP P9WIL3 PAND_MYCTU 25 139 SEQADV 6P1Y PYR B 25 UNP P9WIL3 SER 25 MODIFIED RESIDUE SEQADV 6P1Y ILE B 117 UNP P9WIL3 MET 117 ENGINEERED MUTATION SEQADV 6P1Y LEU B 140 UNP P9WIL3 EXPRESSION TAG SEQADV 6P1Y GLU B 141 UNP P9WIL3 EXPRESSION TAG SEQADV 6P1Y HIS B 142 UNP P9WIL3 EXPRESSION TAG SEQADV 6P1Y HIS B 143 UNP P9WIL3 EXPRESSION TAG SEQADV 6P1Y HIS B 144 UNP P9WIL3 EXPRESSION TAG SEQADV 6P1Y HIS B 145 UNP P9WIL3 EXPRESSION TAG SEQADV 6P1Y HIS B 146 UNP P9WIL3 EXPRESSION TAG SEQADV 6P1Y HIS B 147 UNP P9WIL3 EXPRESSION TAG SEQRES 1 A 24 MET LEU ARG THR MET LEU LYS SER LYS ILE HIS ARG ALA SEQRES 2 A 24 THR VAL THR CYS ALA ASP LEU HIS TYR VAL GLY SEQRES 1 B 123 PYR VAL THR ILE ASP ALA ASP LEU MET ASP ALA ALA ASP SEQRES 2 B 123 LEU LEU GLU GLY GLU GLN VAL THR ILE VAL ASP ILE ASP SEQRES 3 B 123 ASN GLY ALA ARG LEU VAL THR TYR ALA ILE THR GLY GLU SEQRES 4 B 123 ARG GLY SER GLY VAL ILE GLY ILE ASN GLY ALA ALA ALA SEQRES 5 B 123 HIS LEU VAL HIS PRO GLY ASP LEU VAL ILE LEU ILE ALA SEQRES 6 B 123 TYR ALA THR MET ASP ASP ALA ARG ALA ARG THR TYR GLN SEQRES 7 B 123 PRO ARG ILE VAL PHE VAL ASP ALA TYR ASN LYS PRO ILE SEQRES 8 B 123 ASP ILE GLY HIS ASP PRO ALA PHE VAL PRO GLU ASN ALA SEQRES 9 B 123 GLY GLU LEU LEU ASP PRO ARG LEU GLY VAL GLY LEU GLU SEQRES 10 B 123 HIS HIS HIS HIS HIS HIS HET PYR B 25 5 HET NH4 A 101 1 HET TLA B 201 10 HETNAM PYR PYRUVIC ACID HETNAM NH4 AMMONIUM ION HETNAM TLA L(+)-TARTARIC ACID FORMUL 2 PYR C3 H4 O3 FORMUL 3 NH4 H4 N 1+ FORMUL 4 TLA C4 H6 O6 FORMUL 5 HOH *39(H2 O) HELIX 1 AA1 ALA B 30 ALA B 36 1 7 HELIX 2 AA2 ALA B 74 LEU B 78 5 5 HELIX 3 AA3 ASP B 95 TYR B 101 1 7 SHEET 1 AA1 6 ARG B 54 TYR B 58 0 SHEET 2 AA1 6 GLN B 43 ASP B 48 -1 N VAL B 44 O THR B 57 SHEET 3 AA1 6 LEU B 84 ASP B 94 -1 O ILE B 88 N THR B 45 SHEET 4 AA1 6 LEU A 2 THR A 14 -1 N MET A 5 O ALA B 91 SHEET 5 AA1 6 ARG B 104 VAL B 108 1 O VAL B 106 N LYS A 9 SHEET 6 AA1 6 PRO B 114 GLY B 118 -1 O GLY B 118 N ILE B 105 SHEET 1 AA2 4 CYS A 17 ASP A 19 0 SHEET 2 AA2 4 ILE B 69 ASN B 72 1 O ILE B 71 N CYS A 17 SHEET 3 AA2 4 THR B 27 ASP B 29 -1 N THR B 27 O GLY B 70 SHEET 4 AA2 4 ILE B 60 GLY B 62 1 O GLY B 62 N ILE B 28 LINK C PYR B 25 N VAL B 26 1555 1555 1.44 SITE 1 AC1 4 LYS A 9 VAL A 23 HOH A 204 TLA B 201 SITE 1 AC2 11 LYS A 9 NH4 A 101 PYR B 25 VAL B 47 SITE 2 AC2 11 ARG B 54 TYR B 58 ASN B 72 GLY B 73 SITE 3 AC2 11 ALA B 74 ALA B 75 ILE B 86 CRYST1 73.011 73.011 109.530 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009130 0.00000