HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-MAY-19 6P3V TITLE CRYSTAL STRUCTURE OF EIS FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX TITLE 2 WITH INHIBITOR SGT416 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLTRANSFERASE EIS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMINOGLYCOSIDE N-ACETYLTRANSFERASE,ENHANCED INTRACELLULAR COMPND 5 SURVIVAL PROTEIN,PROTEIN-LYSINE N-ACETYLTRANSFERASE; COMPND 6 EC: 2.3.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: EIS, RV2416C, MTCY253.04; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ACETYLTRANSFERASE, AMINOGLYCOSIDE RESISTANCE, COMPETITIVE INHIBITOR, KEYWDS 2 TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.PUNETHA,S.GARNEAU-TSODIKOVA,O.V.TSODIKOV REVDAT 4 11-OCT-23 6P3V 1 REMARK REVDAT 3 18-DEC-19 6P3V 1 REMARK REVDAT 2 23-OCT-19 6P3V 1 JRNL REVDAT 1 04-SEP-19 6P3V 0 JRNL AUTH K.D.GREEN,A.PUNETHA,C.HOU,S.GARNEAU-TSODIKOVA,O.V.TSODIKOV JRNL TITL PROBING THE ROBUSTNESS OF INHIBITORS OF TUBERCULOSIS JRNL TITL 2 AMINOGLYCOSIDE RESISTANCE ENZYME EIS BY MUTAGENESIS. JRNL REF ACS INFECT DIS. V. 5 1772 2019 JRNL REFN ESSN 2373-8227 JRNL PMID 31433614 JRNL DOI 10.1021/ACSINFECDIS.9B00228 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 22900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1277 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1640 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3038 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.34000 REMARK 3 B22 (A**2) : -2.34000 REMARK 3 B33 (A**2) : 7.58000 REMARK 3 B12 (A**2) : -1.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.261 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3137 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2930 ; 0.035 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4265 ; 1.380 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6711 ; 2.333 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ; 6.718 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;28.306 ;18.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;16.283 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;19.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3570 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 742 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1573 ; 2.354 ; 4.075 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1572 ; 2.354 ; 4.075 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1961 ; 3.869 ; 6.098 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1962 ; 3.868 ; 6.098 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1564 ; 2.864 ; 4.445 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1565 ; 2.863 ; 4.449 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2305 ; 4.708 ; 6.499 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3289 ; 6.731 ;45.213 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3199 ; 6.692 ;45.519 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6P3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.65400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3R1K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.0 ADJUSTED AT REMARK 280 ROOM TEMPERATURE, 10% W/V PEG 8000, AND 400 MM (NH4)2SO4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 87.43750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.48206 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.48333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 87.43750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 50.48206 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.48333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 87.43750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 50.48206 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.48333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 87.43750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 50.48206 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.48333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 87.43750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 50.48206 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.48333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 87.43750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 50.48206 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.48333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 100.96413 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 80.96667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 100.96413 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 80.96667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 100.96413 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 80.96667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 100.96413 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 80.96667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 100.96413 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 80.96667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 100.96413 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 80.96667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 87650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 121.45000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 121.45000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 121.45000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 52 REMARK 465 GLY A 53 REMARK 465 PRO A 54 REMARK 465 GLY A 55 REMARK 465 GLY A 157 REMARK 465 LEU A 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 269 -154.44 -134.34 REMARK 500 ASP A 335 61.77 36.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NRV A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 503 DBREF 6P3V A 1 402 UNP P9WFK7 EIS_MYCTU 1 402 SEQADV 6P3V MET A -19 UNP P9WFK7 INITIATING METHIONINE SEQADV 6P3V GLY A -18 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V SER A -17 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V SER A -16 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V HIS A -15 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V HIS A -14 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V HIS A -13 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V HIS A -12 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V HIS A -11 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V HIS A -10 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V SER A -9 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V SER A -8 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V GLY A -7 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V LEU A -6 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V VAL A -5 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V PRO A -4 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V ARG A -3 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V GLY A -2 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V SER A -1 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V HIS A 0 UNP P9WFK7 EXPRESSION TAG SEQADV 6P3V ALA A 204 UNP P9WFK7 CYS 204 ENGINEERED MUTATION SEQRES 1 A 422 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 422 LEU VAL PRO ARG GLY SER HIS MET THR VAL THR LEU CYS SEQRES 3 A 422 SER PRO THR GLU ASP ASP TRP PRO GLY MET PHE LEU LEU SEQRES 4 A 422 ALA ALA ALA SER PHE THR ASP PHE ILE GLY PRO GLU SER SEQRES 5 A 422 ALA THR ALA TRP ARG THR LEU VAL PRO THR ASP GLY ALA SEQRES 6 A 422 VAL VAL VAL ARG ASP GLY ALA GLY PRO GLY SER GLU VAL SEQRES 7 A 422 VAL GLY MET ALA LEU TYR MET ASP LEU ARG LEU THR VAL SEQRES 8 A 422 PRO GLY GLU VAL VAL LEU PRO THR ALA GLY LEU SER PHE SEQRES 9 A 422 VAL ALA VAL ALA PRO THR HIS ARG ARG ARG GLY LEU LEU SEQRES 10 A 422 ARG ALA MET CYS ALA GLU LEU HIS ARG ARG ILE ALA ASP SEQRES 11 A 422 SER GLY TYR PRO VAL ALA ALA LEU HIS ALA SER GLU GLY SEQRES 12 A 422 GLY ILE TYR GLY ARG PHE GLY TYR GLY PRO ALA THR THR SEQRES 13 A 422 LEU HIS GLU LEU THR VAL ASP ARG ARG PHE ALA ARG PHE SEQRES 14 A 422 HIS ALA ASP ALA PRO GLY GLY GLY LEU GLY GLY SER SER SEQRES 15 A 422 VAL ARG LEU VAL ARG PRO THR GLU HIS ARG GLY GLU PHE SEQRES 16 A 422 GLU ALA ILE TYR GLU ARG TRP ARG GLN GLN VAL PRO GLY SEQRES 17 A 422 GLY LEU LEU ARG PRO GLN VAL LEU TRP ASP GLU LEU LEU SEQRES 18 A 422 ALA GLU ALA LYS ALA ALA PRO GLY GLY ASP ARG GLU SER SEQRES 19 A 422 PHE ALA LEU LEU HIS PRO ASP GLY TYR ALA LEU TYR ARG SEQRES 20 A 422 VAL ASP ARG THR ASP LEU LYS LEU ALA ARG VAL SER GLU SEQRES 21 A 422 LEU ARG ALA VAL THR ALA ASP ALA HIS CYS ALA LEU TRP SEQRES 22 A 422 ARG ALA LEU ILE GLY LEU ASP SER MET GLU ARG ILE SER SEQRES 23 A 422 ILE ILE THR HIS PRO GLN ASP PRO LEU PRO HIS LEU LEU SEQRES 24 A 422 THR ASP THR ARG LEU ALA ARG THR THR TRP ARG GLN ASP SEQRES 25 A 422 GLY LEU TRP LEU ARG ILE MET ASN VAL PRO ALA ALA LEU SEQRES 26 A 422 GLU ALA ARG GLY TYR ALA HIS GLU VAL GLY GLU PHE SER SEQRES 27 A 422 THR VAL LEU GLU VAL SER ASP GLY GLY ARG PHE ALA LEU SEQRES 28 A 422 LYS ILE GLY ASP GLY ARG ALA ARG CYS THR PRO THR ASP SEQRES 29 A 422 ALA ALA ALA GLU ILE GLU MET ASP ARG ASP VAL LEU GLY SEQRES 30 A 422 SER LEU TYR LEU GLY ALA HIS ARG ALA SER THR LEU ALA SEQRES 31 A 422 ALA ALA ASN ARG LEU ARG THR LYS ASP SER GLN LEU LEU SEQRES 32 A 422 ARG ARG LEU ASP ALA ALA PHE ALA SER ASP VAL PRO VAL SEQRES 33 A 422 GLN THR ALA PHE GLU PHE HET NRV A 501 23 HET SO4 A 502 5 HET DMS A 503 4 HETNAM NRV N,N-DIETHYL-2-[(8-FLUORO-5-METHYL-5H-[1,2,4]TRIAZINO[5, HETNAM 2 NRV 6-B]INDOL-3-YL)SULFANYL]ETHAN-1-AMINE HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 NRV C16 H20 F N5 S FORMUL 3 SO4 O4 S 2- FORMUL 4 DMS C2 H6 O S FORMUL 5 HOH *80(H2 O) HELIX 1 AA1 THR A 9 ASP A 11 5 3 HELIX 2 AA2 ASP A 12 PHE A 24 1 13 HELIX 3 AA3 GLY A 29 THR A 38 1 10 HELIX 4 AA4 PRO A 89 ARG A 92 5 4 HELIX 5 AA5 GLY A 95 GLY A 112 1 18 HELIX 6 AA6 TYR A 126 GLY A 130 5 5 HELIX 7 AA7 ARG A 167 GLU A 170 5 4 HELIX 8 AA8 HIS A 171 VAL A 186 1 16 HELIX 9 AA9 PRO A 193 GLU A 203 1 11 HELIX 10 AB1 THR A 245 GLY A 258 1 14 HELIX 11 AB2 PRO A 274 LEU A 279 5 6 HELIX 12 AB3 ASP A 281 ARG A 283 5 3 HELIX 13 AB4 ASN A 300 ARG A 308 1 9 HELIX 14 AB5 ASP A 352 LEU A 361 1 10 HELIX 15 AB6 ARG A 365 ALA A 372 1 8 HELIX 16 AB7 ASP A 379 ALA A 391 1 13 SHEET 1 AA1 7 THR A 4 CYS A 6 0 SHEET 2 AA1 7 ALA A 45 ASP A 50 -1 O VAL A 47 N CYS A 6 SHEET 3 AA1 7 GLU A 57 VAL A 71 -1 O ALA A 62 N VAL A 46 SHEET 4 AA1 7 VAL A 75 VAL A 87 -1 O VAL A 75 N VAL A 71 SHEET 5 AA1 7 VAL A 115 HIS A 119 1 O ALA A 117 N LEU A 82 SHEET 6 AA1 7 LEU A 294 ILE A 298 -1 O TRP A 295 N LEU A 118 SHEET 7 AA1 7 GLY A 132 PRO A 133 -1 N GLY A 132 O LEU A 296 SHEET 1 AA2 7 ARG A 164 VAL A 166 0 SHEET 2 AA2 7 PHE A 215 HIS A 219 -1 O LEU A 218 N ARG A 164 SHEET 3 AA2 7 GLY A 222 VAL A 228 -1 O GLY A 222 N HIS A 219 SHEET 4 AA2 7 LEU A 235 ALA A 243 -1 O GLU A 240 N LEU A 225 SHEET 5 AA2 7 ARG A 264 THR A 269 1 O SER A 266 N VAL A 238 SHEET 6 AA2 7 THR A 136 ASP A 143 -1 N HIS A 138 O THR A 269 SHEET 7 AA2 7 ALA A 285 ASP A 292 -1 O GLN A 291 N LEU A 137 SHEET 1 AA3 5 ARG A 337 PRO A 342 0 SHEET 2 AA3 5 GLY A 327 GLY A 334 -1 N ALA A 330 O THR A 341 SHEET 3 AA3 5 PHE A 317 VAL A 323 -1 N THR A 319 O LEU A 331 SHEET 4 AA3 5 ILE A 349 MET A 351 1 O ILE A 349 N GLU A 322 SHEET 5 AA3 5 LEU A 375 ARG A 376 -1 O ARG A 376 N GLU A 350 SITE 1 AC1 11 TRP A 13 ASP A 26 PHE A 27 ALA A 33 SITE 2 AC1 11 TRP A 36 ARG A 37 LEU A 63 SER A 83 SITE 3 AC1 11 PHE A 84 PHE A 402 DMS A 503 SITE 1 AC2 7 ARG A 242 ILE A 268 THR A 269 HIS A 270 SITE 2 AC2 7 GLN A 397 THR A 398 HOH A 611 SITE 1 AC3 2 ASP A 26 NRV A 501 CRYST1 174.875 174.875 121.450 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005718 0.003302 0.000000 0.00000 SCALE2 0.000000 0.006603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008234 0.00000