HEADER ELECTRON TRANSPORT/OXIDOREDUCTASE 25-MAY-19 6P43 TITLE YEAST CYTOCHROME C PEROXIDASE IN COMPLEX WITH ISO-1 CYTOCHROME C TITLE 2 (Y48K) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C PEROXIDASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: CCP; COMPND 5 EC: 1.11.1.5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYTOCHROME C ISO-1; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: CCP1, CCP, CPO, YKR066C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PPSUMO; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 15 S288C); SOURCE 16 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 17 ORGANISM_TAXID: 559292; SOURCE 18 STRAIN: ATCC 204508 / S288C; SOURCE 19 GENE: CYC1, YJR048W, J1653; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PBTR-1 KEYWDS HEME PROTEINS, ELECTRON HOPPING, MULTI-STEP TUNNELING, ELECTRON KEYWDS 2 TRANSPORT-OXIDOREDUCTASE COMPLEX, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR E.F.YEE,B.R.CRANE REVDAT 4 12-AUG-26 6P43 1 REMARK LINK REVDAT 3 23-OCT-24 6P43 1 LINK REVDAT 2 20-NOV-19 6P43 1 JRNL REVDAT 1 23-OCT-19 6P43 0 JRNL AUTH E.F.YEE,B.DZIKOVSKI,B.R.CRANE JRNL TITL TUNING RADICAL RELAY RESIDUES BY PROTON MANAGEMENT RESCUES JRNL TITL 2 PROTEIN ELECTRON HOPPING. JRNL REF J.AM.CHEM.SOC. V. 141 17571 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 31603693 JRNL DOI 10.1021/JACS.9B05715 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.9 REMARK 3 NUMBER OF REFLECTIONS : 41357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.560 REMARK 3 FREE R VALUE TEST SET COUNT : 1886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.2627 - 4.4879 0.71 2802 133 0.1744 0.2132 REMARK 3 2 4.4879 - 3.5663 0.77 3047 147 0.1519 0.1914 REMARK 3 3 3.5663 - 3.1167 0.80 3167 151 0.1751 0.2183 REMARK 3 4 3.1167 - 2.8323 0.78 3035 145 0.1909 0.2045 REMARK 3 5 2.8323 - 2.6296 0.77 3070 152 0.1956 0.2150 REMARK 3 6 2.6296 - 2.4747 0.76 2968 141 0.1993 0.2340 REMARK 3 7 2.4747 - 2.3509 0.77 3034 138 0.2034 0.2375 REMARK 3 8 2.3509 - 2.2487 0.78 3102 147 0.2107 0.2519 REMARK 3 9 2.2487 - 2.1622 0.82 3230 155 0.1992 0.2277 REMARK 3 10 2.1622 - 2.0876 0.83 3230 154 0.2117 0.2778 REMARK 3 11 2.0876 - 2.0224 0.81 3239 158 0.2224 0.2812 REMARK 3 12 2.0224 - 1.9646 0.78 3044 147 0.2247 0.2509 REMARK 3 13 1.9646 - 1.9129 0.62 2503 118 0.2531 0.3032 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6-5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43668 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.7 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, 175 MM NACL, 5 REMARK 280 MM N-OCTYL-B-D-GLUCOSIDE, POLYETHYLENE GLYCOL 3350 14%-20%, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE1 TRP C 223 O HOH C 401 1.88 REMARK 500 O HOH A 511 O HOH A 529 1.89 REMARK 500 N THR C 1 O HOH C 402 1.93 REMARK 500 O HOH C 485 O HOH C 643 1.94 REMARK 500 O HOH A 601 O HOH A 637 1.95 REMARK 500 O HOH A 450 O HOH A 674 1.95 REMARK 500 O HOH A 478 O HOH A 653 1.96 REMARK 500 O HOH C 460 O HOH C 664 1.98 REMARK 500 O HOH A 654 O HOH A 672 1.99 REMARK 500 O HOH C 519 O HOH C 593 1.99 REMARK 500 O HOH B 320 O HOH B 343 1.99 REMARK 500 O HOH A 405 O HOH A 688 2.00 REMARK 500 O HOH C 420 O HOH C 617 2.00 REMARK 500 OE2 GLU A 201 O HOH A 401 2.00 REMARK 500 O HOH C 405 O HOH C 699 2.00 REMARK 500 SG CYS B 17 CAC HEM B 201 2.00 REMARK 500 O HOH C 487 O HOH C 652 2.01 REMARK 500 OD2 ASP A 224 O HOH A 402 2.01 REMARK 500 O HOH A 463 O HOH A 677 2.03 REMARK 500 O HOH A 569 O HOH A 635 2.03 REMARK 500 OE1 GLU A 201 O HOH A 403 2.03 REMARK 500 OG SER B 65 O HOH B 301 2.03 REMARK 500 O HOH C 549 O HOH C 643 2.04 REMARK 500 OD1 ASP A 146 O HOH A 404 2.04 REMARK 500 O HOH C 695 O HOH C 712 2.04 REMARK 500 O HOH A 458 O HOH A 605 2.04 REMARK 500 O HOH C 522 O HOH C 685 2.06 REMARK 500 O HOH C 412 O HOH C 558 2.06 REMARK 500 O HOH A 669 O HOH C 618 2.06 REMARK 500 O HOH C 543 O HOH C 620 2.06 REMARK 500 SG CYS B 14 CBB HEM B 201 2.07 REMARK 500 O HOH A 652 O HOH A 674 2.10 REMARK 500 O HOH B 341 O HOH B 345 2.11 REMARK 500 O HOH C 454 O HOH C 496 2.11 REMARK 500 O HOH A 612 O HOH A 634 2.12 REMARK 500 OG SER A 246 O HOH A 405 2.13 REMARK 500 O HOH A 568 O HOH A 609 2.13 REMARK 500 NZ LYS A 215 O HOH A 406 2.13 REMARK 500 O HOH A 555 O HOH A 572 2.13 REMARK 500 O HOH A 725 O HOH A 727 2.14 REMARK 500 O HOH C 691 O HOH C 733 2.15 REMARK 500 OD1 ASP A 34 O HOH A 407 2.16 REMARK 500 O HOH C 551 O HOH C 689 2.16 REMARK 500 O HOH A 486 O HOH A 622 2.16 REMARK 500 NE2 GLN C 255 O HOH C 403 2.16 REMARK 500 O HOH C 682 O HOH C 732 2.16 REMARK 500 O HOH C 669 O HOH C 685 2.16 REMARK 500 OE2 GLU C 201 O HOH C 404 2.16 REMARK 500 O HOH C 447 O HOH C 659 2.16 REMARK 500 O HOH C 597 O HOH C 712 2.16 REMARK 500 REMARK 500 THIS ENTRY HAS 60 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 669 O HOH C 711 1655 1.86 REMARK 500 O HOH C 549 O HOH C 641 1565 1.92 REMARK 500 O HOH A 552 O HOH C 630 1655 2.05 REMARK 500 O HOH A 703 O HOH B 344 1565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 148 56.68 -92.21 REMARK 500 HIS A 175 0.29 -69.93 REMARK 500 LYS B 27 -130.06 -120.32 REMARK 500 ARG B 38 -155.47 -139.94 REMARK 500 SER B 40 -92.60 -66.47 REMARK 500 GLN B 42 -70.40 73.77 REMARK 500 ALA B 43 179.84 62.33 REMARK 500 TYR B 46 153.17 71.44 REMARK 500 ASP B 60 -159.82 -97.80 REMARK 500 ASN B 70 83.59 -152.46 REMARK 500 LYS B 72 34.53 -71.62 REMARK 500 LYS B 73 -52.49 -138.99 REMARK 500 THR C 2 106.35 -166.23 REMARK 500 ASP C 33 56.22 -92.53 REMARK 500 ASP C 150 -167.94 -109.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 730 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 731 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 732 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 733 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 734 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH C 736 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH C 737 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH C 738 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH C 739 DISTANCE = 7.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 175 NE2 REMARK 620 2 HEM A 301 NA 99.5 REMARK 620 3 HEM A 301 NB 95.2 90.6 REMARK 620 4 HEM A 301 NC 90.6 169.9 89.0 REMARK 620 5 HEM A 301 ND 100.6 87.8 164.2 89.9 REMARK 620 6 HOH A 534 O 172.4 73.0 83.5 96.9 80.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 18 NE2 REMARK 620 2 HEM B 201 NA 85.5 REMARK 620 3 HEM B 201 NB 88.1 90.0 REMARK 620 4 HEM B 201 NC 92.9 177.2 87.7 REMARK 620 5 HEM B 201 ND 90.2 91.7 177.5 90.5 REMARK 620 6 MET B 80 SD 169.0 85.0 97.4 96.8 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 175 NE2 REMARK 620 2 HEM C 301 NA 96.2 REMARK 620 3 HEM C 301 NB 100.6 89.5 REMARK 620 4 HEM C 301 NC 100.0 163.8 88.3 REMARK 620 5 HEM C 301 ND 99.0 85.6 160.2 91.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM C 301 DBREF 6P43 A 1 294 UNP P00431 CCPR_YEAST 68 361 DBREF 6P43 B -5 103 UNP P00044 CYC1_YEAST 2 109 DBREF 6P43 C 1 294 UNP P00431 CCPR_YEAST 68 361 SEQADV 6P43 ILE A 53 UNP P00431 THR 120 CONFLICT SEQADV 6P43 GLY A 152 UNP P00431 ASP 219 CONFLICT SEQADV 6P43 LYS B 48 UNP P00044 TYR 54 ENGINEERED MUTATION SEQADV 6P43 SER B 102 UNP P00044 CYS 108 CONFLICT SEQADV 6P43 ILE C 53 UNP P00431 THR 120 CONFLICT SEQADV 6P43 GLY C 152 UNP P00431 ASP 219 CONFLICT SEQRES 1 A 294 THR THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY SEQRES 2 A 294 ARG SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE SEQRES 3 A 294 ALA LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR SEQRES 4 A 294 ILE GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS SEQRES 5 A 294 ILE SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SEQRES 6 A 294 SER TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN SEQRES 7 A 294 ASP PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE SEQRES 8 A 294 LEU GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER SEQRES 9 A 294 GLY ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN SEQRES 10 A 294 GLU MET GLN GLY PRO LYS ILE PRO TRP ARG CYS GLY ARG SEQRES 11 A 294 VAL ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG SEQRES 12 A 294 LEU PRO ASP ALA ASP LYS ASP ALA GLY TYR VAL ARG THR SEQRES 13 A 294 PHE PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL SEQRES 14 A 294 ALA LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU SEQRES 15 A 294 LYS ASN SER GLY TYR GLU GLY PRO TRP GLY ALA ALA ASN SEQRES 16 A 294 ASN VAL PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN SEQRES 17 A 294 GLU ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU SEQRES 18 A 294 GLN TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR SEQRES 19 A 294 ASP TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE SEQRES 20 A 294 VAL LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS SEQRES 21 A 294 ASP PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY SEQRES 22 A 294 ILE THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE SEQRES 23 A 294 LYS THR LEU GLU GLU GLN GLY LEU SEQRES 1 B 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 B 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 B 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 B 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 B 108 LYS THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 B 108 GLU ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS SEQRES 7 B 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 B 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 B 108 LYS ALA SER GLU SEQRES 1 C 294 THR THR PRO LEU VAL HIS VAL ALA SER VAL GLU LYS GLY SEQRES 2 C 294 ARG SER TYR GLU ASP PHE GLN LYS VAL TYR ASN ALA ILE SEQRES 3 C 294 ALA LEU LYS LEU ARG GLU ASP ASP GLU TYR ASP ASN TYR SEQRES 4 C 294 ILE GLY TYR GLY PRO VAL LEU VAL ARG LEU ALA TRP HIS SEQRES 5 C 294 ILE SER GLY THR TRP ASP LYS HIS ASP ASN THR GLY GLY SEQRES 6 C 294 SER TYR GLY GLY THR TYR ARG PHE LYS LYS GLU PHE ASN SEQRES 7 C 294 ASP PRO SER ASN ALA GLY LEU GLN ASN GLY PHE LYS PHE SEQRES 8 C 294 LEU GLU PRO ILE HIS LYS GLU PHE PRO TRP ILE SER SER SEQRES 9 C 294 GLY ASP LEU PHE SER LEU GLY GLY VAL THR ALA VAL GLN SEQRES 10 C 294 GLU MET GLN GLY PRO LYS ILE PRO TRP ARG CYS GLY ARG SEQRES 11 C 294 VAL ASP THR PRO GLU ASP THR THR PRO ASP ASN GLY ARG SEQRES 12 C 294 LEU PRO ASP ALA ASP LYS ASP ALA GLY TYR VAL ARG THR SEQRES 13 C 294 PHE PHE GLN ARG LEU ASN MET ASN ASP ARG GLU VAL VAL SEQRES 14 C 294 ALA LEU MET GLY ALA HIS ALA LEU GLY LYS THR HIS LEU SEQRES 15 C 294 LYS ASN SER GLY TYR GLU GLY PRO TRP GLY ALA ALA ASN SEQRES 16 C 294 ASN VAL PHE THR ASN GLU PHE TYR LEU ASN LEU LEU ASN SEQRES 17 C 294 GLU ASP TRP LYS LEU GLU LYS ASN ASP ALA ASN ASN GLU SEQRES 18 C 294 GLN TRP ASP SER LYS SER GLY TYR MET MET LEU PRO THR SEQRES 19 C 294 ASP TYR SER LEU ILE GLN ASP PRO LYS TYR LEU SER ILE SEQRES 20 C 294 VAL LYS GLU TYR ALA ASN ASP GLN ASP LYS PHE PHE LYS SEQRES 21 C 294 ASP PHE SER LYS ALA PHE GLU LYS LEU LEU GLU ASN GLY SEQRES 22 C 294 ILE THR PHE PRO LYS ASP ALA PRO SER PRO PHE ILE PHE SEQRES 23 C 294 LYS THR LEU GLU GLU GLN GLY LEU HET HEM A 301 43 HET HEM B 201 43 HET HEM C 301 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 4 HEM 3(C34 H32 FE N4 O4) FORMUL 7 HOH *724(H2 O) HELIX 1 AA1 SER A 15 ASP A 33 1 19 HELIX 2 AA2 GLU A 35 ILE A 40 1 6 HELIX 3 AA3 TYR A 42 GLY A 55 1 14 HELIX 4 AA4 GLY A 69 ARG A 72 5 4 HELIX 5 AA5 PHE A 73 ASN A 78 1 6 HELIX 6 AA6 ASP A 79 GLY A 84 5 6 HELIX 7 AA7 LEU A 85 PHE A 99 1 15 HELIX 8 AA8 SER A 103 MET A 119 1 17 HELIX 9 AA9 PRO A 134 THR A 138 5 5 HELIX 10 AB1 ASP A 150 ARG A 160 1 11 HELIX 11 AB2 ASN A 164 GLY A 173 1 10 HELIX 12 AB3 ALA A 174 LEU A 177 5 4 HELIX 13 AB4 HIS A 181 GLY A 186 1 6 HELIX 14 AB5 ASN A 200 GLU A 209 1 10 HELIX 15 AB6 LEU A 232 ASP A 241 1 10 HELIX 16 AB7 ASP A 241 ASP A 254 1 14 HELIX 17 AB8 ASP A 254 ASN A 272 1 19 HELIX 18 AB9 LEU A 289 GLY A 293 5 5 HELIX 19 AC1 SER B 2 CYS B 14 1 13 HELIX 20 AC2 ALA B 51 ASN B 56 1 6 HELIX 21 AC3 ASN B 62 LEU B 68 1 7 HELIX 22 AC4 ASN B 70 ILE B 75 1 6 HELIX 23 AC5 LYS B 87 SER B 102 1 16 HELIX 24 AC6 SER C 15 ASP C 33 1 19 HELIX 25 AC7 GLU C 35 ILE C 40 1 6 HELIX 26 AC8 TYR C 42 GLY C 55 1 14 HELIX 27 AC9 GLY C 69 ARG C 72 5 4 HELIX 28 AD1 PHE C 73 ASN C 78 1 6 HELIX 29 AD2 ASP C 79 GLY C 84 5 6 HELIX 30 AD3 LEU C 85 PHE C 99 1 15 HELIX 31 AD4 SER C 103 MET C 119 1 17 HELIX 32 AD5 PRO C 134 THR C 138 5 5 HELIX 33 AD6 ASP C 150 ARG C 160 1 11 HELIX 34 AD7 ASN C 164 GLY C 173 1 10 HELIX 35 AD8 ALA C 174 LEU C 177 5 4 HELIX 36 AD9 HIS C 181 GLY C 186 1 6 HELIX 37 AE1 ASN C 200 GLU C 209 1 10 HELIX 38 AE2 LEU C 232 ASP C 241 1 10 HELIX 39 AE3 ASP C 241 ASP C 254 1 14 HELIX 40 AE4 ASP C 254 ASN C 272 1 19 HELIX 41 AE5 LEU C 289 GLY C 293 5 5 SHEET 1 AA1 2 HIS A 6 VAL A 7 0 SHEET 2 AA1 2 ILE A 274 THR A 275 1 O THR A 275 N HIS A 6 SHEET 1 AA2 2 LYS A 179 THR A 180 0 SHEET 2 AA2 2 GLY A 189 PRO A 190 -1 O GLY A 189 N THR A 180 SHEET 1 AA3 3 TRP A 211 LYS A 215 0 SHEET 2 AA3 3 GLU A 221 SER A 225 -1 O GLN A 222 N GLU A 214 SHEET 3 AA3 3 MET A 230 MET A 231 -1 O MET A 231 N TRP A 223 SHEET 1 AA4 2 HIS C 6 VAL C 7 0 SHEET 2 AA4 2 ILE C 274 THR C 275 1 O THR C 275 N HIS C 6 SHEET 1 AA5 2 LYS C 179 THR C 180 0 SHEET 2 AA5 2 GLY C 189 PRO C 190 -1 O GLY C 189 N THR C 180 SHEET 1 AA6 3 LYS C 212 LYS C 215 0 SHEET 2 AA6 3 GLU C 221 ASP C 224 -1 O GLN C 222 N GLU C 214 SHEET 3 AA6 3 MET C 230 MET C 231 -1 O MET C 231 N TRP C 223 LINK SG CYS B 14 CAB HEM B 201 1555 1555 2.00 LINK CB SER B 40 O2A HEM B 201 1555 1555 1.37 LINK NE2 HIS A 175 FE HEM A 301 1555 1555 2.04 LINK FE HEM A 301 O HOH A 534 1555 1555 2.62 LINK NE2 HIS B 18 FE HEM B 201 1555 1555 2.00 LINK SD MET B 80 FE HEM B 201 1555 1555 2.25 LINK NE2 HIS C 175 FE HEM C 301 1555 1555 2.05 SITE 1 AC1 24 PRO A 44 VAL A 45 ARG A 48 TRP A 51 SITE 2 AC1 24 ASP A 146 ALA A 147 LEU A 171 MET A 172 SITE 3 AC1 24 ALA A 174 HIS A 175 LEU A 177 GLY A 178 SITE 4 AC1 24 LYS A 179 THR A 180 HIS A 181 ASN A 184 SITE 5 AC1 24 SER A 185 TRP A 191 LEU A 232 THR A 234 SITE 6 AC1 24 HOH A 440 HOH A 493 HOH A 500 HOH A 534 SITE 1 AC2 22 ALA A 193 ALA A 194 ARG B 13 CYS B 14 SITE 2 AC2 22 GLN B 16 CYS B 17 HIS B 18 VAL B 28 SITE 3 AC2 22 LEU B 32 SER B 40 GLY B 41 TYR B 46 SITE 4 AC2 22 LYS B 48 THR B 49 TRP B 59 MET B 64 SITE 5 AC2 22 TYR B 67 LEU B 68 THR B 78 LYS B 79 SITE 6 AC2 22 MET B 80 LEU B 94 SITE 1 AC3 21 PRO C 44 ARG C 48 TRP C 51 PRO C 145 SITE 2 AC3 21 ALA C 147 LEU C 171 ALA C 174 HIS C 175 SITE 3 AC3 21 LEU C 177 GLY C 178 LYS C 179 THR C 180 SITE 4 AC3 21 HIS C 181 ASN C 184 SER C 185 TRP C 191 SITE 5 AC3 21 LEU C 232 THR C 234 HOH C 486 HOH C 491 SITE 6 AC3 21 HOH C 560 CRYST1 45.208 50.890 86.429 105.64 95.02 107.31 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022120 0.006892 0.004299 0.00000 SCALE2 0.000000 0.020582 0.006733 0.00000 SCALE3 0.000000 0.000000 0.012220 0.00000 CONECT 1396 5632 CONECT 2514 5652 CONECT 2547 5675 CONECT 2710 5646 CONECT 3030 5675 CONECT 4613 5718 CONECT 5590 5594 5621 CONECT 5591 5597 5604 CONECT 5592 5607 5611 CONECT 5593 5614 5618 CONECT 5594 5590 5595 5628 CONECT 5595 5594 5596 5599 CONECT 5596 5595 5597 5598 CONECT 5597 5591 5596 5628 CONECT 5598 5596 CONECT 5599 5595 5600 CONECT 5600 5599 5601 CONECT 5601 5600 5602 5603 CONECT 5602 5601 CONECT 5603 5601 CONECT 5604 5591 5605 5629 CONECT 5605 5604 5606 5608 CONECT 5606 5605 5607 5609 CONECT 5607 5592 5606 5629 CONECT 5608 5605 CONECT 5609 5606 5610 CONECT 5610 5609 CONECT 5611 5592 5612 5630 CONECT 5612 5611 5613 5615 CONECT 5613 5612 5614 5616 CONECT 5614 5593 5613 5630 CONECT 5615 5612 CONECT 5616 5613 5617 CONECT 5617 5616 CONECT 5618 5593 5619 5631 CONECT 5619 5618 5620 5622 CONECT 5620 5619 5621 5623 CONECT 5621 5590 5620 5631 CONECT 5622 5619 CONECT 5623 5620 5624 CONECT 5624 5623 5625 CONECT 5625 5624 5626 5627 CONECT 5626 5625 CONECT 5627 5625 CONECT 5628 5594 5597 5632 CONECT 5629 5604 5607 5632 CONECT 5630 5611 5614 5632 CONECT 5631 5618 5621 5632 CONECT 5632 1396 5628 5629 5630 CONECT 5632 5631 5852 CONECT 5633 5637 5664 CONECT 5634 5640 5647 CONECT 5635 5650 5654 CONECT 5636 5657 5661 CONECT 5637 5633 5638 5671 CONECT 5638 5637 5639 5642 CONECT 5639 5638 5640 5641 CONECT 5640 5634 5639 5671 CONECT 5641 5639 CONECT 5642 5638 5643 CONECT 5643 5642 5644 CONECT 5644 5643 5645 5646 CONECT 5645 5644 CONECT 5646 2710 5644 CONECT 5647 5634 5648 5672 CONECT 5648 5647 5649 5651 CONECT 5649 5648 5650 5652 CONECT 5650 5635 5649 5672 CONECT 5651 5648 CONECT 5652 2514 5649 5653 CONECT 5653 5652 CONECT 5654 5635 5655 5673 CONECT 5655 5654 5656 5658 CONECT 5656 5655 5657 5659 CONECT 5657 5636 5656 5673 CONECT 5658 5655 CONECT 5659 5656 5660 CONECT 5660 5659 CONECT 5661 5636 5662 5674 CONECT 5662 5661 5663 5665 CONECT 5663 5662 5664 5666 CONECT 5664 5633 5663 5674 CONECT 5665 5662 CONECT 5666 5663 5667 CONECT 5667 5666 5668 CONECT 5668 5667 5669 5670 CONECT 5669 5668 CONECT 5670 5668 CONECT 5671 5637 5640 5675 CONECT 5672 5647 5650 5675 CONECT 5673 5654 5657 5675 CONECT 5674 5661 5664 5675 CONECT 5675 2547 3030 5671 5672 CONECT 5675 5673 5674 CONECT 5676 5680 5707 CONECT 5677 5683 5690 CONECT 5678 5693 5697 CONECT 5679 5700 5704 CONECT 5680 5676 5681 5714 CONECT 5681 5680 5682 5685 CONECT 5682 5681 5683 5684 CONECT 5683 5677 5682 5714 CONECT 5684 5682 CONECT 5685 5681 5686 CONECT 5686 5685 5687 CONECT 5687 5686 5688 5689 CONECT 5688 5687 CONECT 5689 5687 CONECT 5690 5677 5691 5715 CONECT 5691 5690 5692 5694 CONECT 5692 5691 5693 5695 CONECT 5693 5678 5692 5715 CONECT 5694 5691 CONECT 5695 5692 5696 CONECT 5696 5695 CONECT 5697 5678 5698 5716 CONECT 5698 5697 5699 5701 CONECT 5699 5698 5700 5702 CONECT 5700 5679 5699 5716 CONECT 5701 5698 CONECT 5702 5699 5703 CONECT 5703 5702 CONECT 5704 5679 5705 5717 CONECT 5705 5704 5706 5708 CONECT 5706 5705 5707 5709 CONECT 5707 5676 5706 5717 CONECT 5708 5705 CONECT 5709 5706 5710 CONECT 5710 5709 5711 CONECT 5711 5710 5712 5713 CONECT 5712 5711 CONECT 5713 5711 CONECT 5714 5680 5683 5718 CONECT 5715 5690 5693 5718 CONECT 5716 5697 5700 5718 CONECT 5717 5704 5707 5718 CONECT 5718 4613 5714 5715 5716 CONECT 5718 5717 CONECT 5852 5632 MASTER 374 0 3 41 14 0 18 6 6439 3 139 55 END