HEADER SIGNALING PROTEIN 30-MAY-19 6P5E TITLE PHOTOACTIVE YELLOW PROTEIN PYP 80PS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOACTIVE YELLOW PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PYP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALORHODOSPIRA HALOPHILA; SOURCE 3 ORGANISM_TAXID: 1053; SOURCE 4 GENE: PYP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PYP, 10PS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.PANDEY,M.SCHMIDT REVDAT 6 15-NOV-23 6P5E 1 LINK REVDAT 5 16-AUG-23 6P5E 1 REMARK REVDAT 4 15-JAN-20 6P5E 1 JRNL REVDAT 3 04-DEC-19 6P5E 1 JRNL REVDAT 2 27-NOV-19 6P5E 1 REMARK REVDAT 1 18-SEP-19 6P5E 0 JRNL AUTH S.PANDEY,R.BEAN,T.SATO,I.POUDYAL,J.BIELECKI, JRNL AUTH 2 J.CRUZ VILLARREAL,O.YEFANOV,V.MARIANI,T.A.WHITE,C.KUPITZ, JRNL AUTH 3 M.HUNTER,M.H.ABDELLATIF,S.BAJT,V.BONDAR,A.ECHELMEIER, JRNL AUTH 4 D.DOPPLER,M.EMONS,M.FRANK,R.FROMME,Y.GEVORKOV,G.GIOVANETTI, JRNL AUTH 5 M.JIANG,D.KIM,Y.KIM,H.KIRKWOOD,A.KLIMOVSKAIA,J.KNOSKA, JRNL AUTH 6 F.H.M.KOUA,R.LETRUN,S.LISOVA,L.MAIA,V.MAZALOVA,D.MEZA, JRNL AUTH 7 T.MICHELAT,A.OURMAZD,G.PALMER,M.RAMILLI,R.SCHUBERT, JRNL AUTH 8 P.SCHWANDER,A.SILENZI,J.SZTUK-DAMBIETZ,A.TOLSTIKOVA, JRNL AUTH 9 H.N.CHAPMAN,A.ROS,A.BARTY,P.FROMME,A.P.MANCUSO,M.SCHMIDT JRNL TITL TIME-RESOLVED SERIAL FEMTOSECOND CRYSTALLOGRAPHY AT THE JRNL TITL 2 EUROPEAN XFEL. JRNL REF NAT.METHODS V. 17 73 2020 JRNL REFN ESSN 1548-7105 JRNL PMID 31740816 JRNL DOI 10.1038/S41592-019-0628-Z REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 11.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 12072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.326 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 612 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 721 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3890 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.4470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 987 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 4.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.636 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.867 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.810 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1044 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 967 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1410 ; 2.256 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2237 ; 0.967 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 124 ; 8.355 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;42.641 ;25.818 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 181 ;17.497 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;10.544 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 150 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1198 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 241 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 499 ; 0.267 ; 0.465 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 498 ; 0.267 ; 0.466 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 622 ; 0.451 ; 0.697 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 623 ; 0.450 ; 0.697 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 545 ; 0.195 ; 0.439 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 545 ; 0.195 ; 0.439 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 788 ; 0.315 ; 0.658 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1226 ; 1.453 ; 3.527 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1202 ; 1.012 ; 3.508 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6P5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : SPB/SFX REMARK 200 X-RAY GENERATOR MODEL : EUROPEAN XFEL BEAMLINE SPB/SFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : AGIPD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12072 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 11.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 156.7 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE, SMALL TUBES, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.40000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.40000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 48 O HOH A 201 1.50 REMARK 500 NE2 GLN A 99 O HOH A 202 1.86 REMARK 500 O HOH A 282 O HOH A 289 1.93 REMARK 500 O HOH A 283 O HOH A 286 2.00 REMARK 500 O ARG A 52 O HOH A 203 2.09 REMARK 500 OE1 GLN A 99 O HOH A 204 2.10 REMARK 500 O HOH A 234 O HOH A 246 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 273 O HOH A 273 3555 1.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 75 -77.66 -120.17 REMARK 500 ASP A 97 21.34 -152.01 REMARK 500 ASP A 116 69.19 -105.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 114 GLY A 115 135.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 6P5E A 1 125 UNP P16113 PYP_HALHA 1 125 SEQRES 1 A 125 MET GLU HIS VAL ALA PHE GLY SER GLU ASP ILE GLU ASN SEQRES 2 A 125 THR LEU ALA LYS MET ASP ASP GLY GLN LEU ASP GLY LEU SEQRES 3 A 125 ALA PHE GLY ALA ILE GLN LEU ASP GLY ASP GLY ASN ILE SEQRES 4 A 125 LEU GLN TYR ASN ALA ALA GLU GLY ASP ILE THR GLY ARG SEQRES 5 A 125 ASP PRO LYS GLN VAL ILE GLY LYS ASN PHE PHE LYS ASP SEQRES 6 A 125 VAL ALA PRO 60F THR ASP SER PRO GLU PHE TYR GLY LYS SEQRES 7 A 125 PHE LYS GLU GLY VAL ALA SER GLY ASN LEU ASN THR MET SEQRES 8 A 125 PHE GLU TYR THR PHE ASP TYR GLN MET THR PRO THR LYS SEQRES 9 A 125 VAL LYS VAL HIS MET LYS LYS ALA LEU SER GLY ASP SER SEQRES 10 A 125 TYR TRP VAL PHE VAL LYS ARG VAL MODRES 6P5E 60F A 69 CYS MODIFIED RESIDUE HET 60F A 69 17 HETNAM 60F (2~{R})-2-AZANYL-3-[(~{E})-3-(4-HYDROXYPHENYL)PROP-2- HETNAM 2 60F ENOYL]SULFANYL-PROPANOIC ACID FORMUL 1 60F C12 H13 N O4 S FORMUL 2 HOH *92(H2 O) HELIX 1 AA1 ASP A 10 LYS A 17 1 8 HELIX 2 AA2 ASP A 19 ASP A 24 1 6 HELIX 3 AA3 ASN A 43 GLY A 51 1 9 HELIX 4 AA4 ASP A 53 ILE A 58 1 6 HELIX 5 AA5 ALA A 67 ASP A 71 5 5 HELIX 6 AA6 PHE A 75 GLY A 86 1 12 SHEET 1 AA1 5 ILE A 39 TYR A 42 0 SHEET 2 AA1 5 GLY A 29 ASP A 34 -1 N GLN A 32 O LEU A 40 SHEET 3 AA1 5 SER A 117 ARG A 124 -1 O VAL A 122 N GLY A 29 SHEET 4 AA1 5 THR A 103 LYS A 111 -1 N LYS A 110 O TRP A 119 SHEET 5 AA1 5 ASN A 89 PHE A 96 -1 N PHE A 92 O VAL A 107 LINK C PRO A 68 N 60F A 69 1555 1555 1.31 LINK C 60F A 69 N THR A 70 1555 1555 1.37 CRYST1 66.900 66.900 40.800 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014948 0.008630 0.000000 0.00000 SCALE2 0.000000 0.017260 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024510 0.00000 HETATM 523 C1 60F A 69 12.246 2.594 -19.692 1.00 2.71 C HETATM 524 C2 60F A 69 12.251 1.184 -19.576 1.00 2.62 C HETATM 525 C3 60F A 69 13.260 0.475 -19.467 1.00 2.61 C HETATM 526 O1 60F A 69 12.857 3.076 -20.392 1.00 2.75 O HETATM 527 C1' 60F A 69 14.596 0.152 -18.960 1.00 2.59 C HETATM 528 C6' 60F A 69 15.126 0.499 -17.776 1.00 2.61 C HETATM 529 C5' 60F A 69 16.284 0.119 -17.337 1.00 2.60 C HETATM 530 C4' 60F A 69 17.015 -0.716 -18.114 1.00 2.62 C HETATM 531 O4' 60F A 69 18.137 -1.168 -17.738 1.00 2.78 O HETATM 532 C3' 60F A 69 16.526 -1.127 -19.278 1.00 2.62 C HETATM 533 C2' 60F A 69 15.337 -0.589 -19.723 1.00 2.60 C HETATM 534 N 60F A 69 12.332 5.855 -21.305 1.00 2.67 N HETATM 535 CA 60F A 69 11.161 6.136 -20.369 1.00 2.62 C HETATM 536 CB 60F A 69 10.414 4.768 -20.322 1.00 2.66 C HETATM 537 SG 60F A 69 10.948 3.498 -18.693 1.00 2.81 S HETATM 538 C 60F A 69 11.661 6.805 -19.021 1.00 2.57 C HETATM 539 O 60F A 69 10.977 7.258 -18.294 1.00 2.46 O TER 1023 VAL A 125 HETATM 1024 O HOH A 201 19.329 -13.255 -12.861 1.00 2.65 O HETATM 1025 O HOH A 202 13.713 -3.756 -26.946 1.00 2.00 O HETATM 1026 O HOH A 203 18.630 -10.066 -20.920 1.00 8.09 O HETATM 1027 O HOH A 204 11.884 -3.419 -29.353 1.00 6.11 O HETATM 1028 O HOH A 205 6.296 -5.549 -8.959 1.00 10.92 O HETATM 1029 O HOH A 206 23.582 14.077 -0.873 1.00 2.00 O HETATM 1030 O HOH A 207 15.474 9.896 -24.228 1.00 2.00 O HETATM 1031 O HOH A 208 9.242 13.084 -6.957 1.00 17.97 O HETATM 1032 O HOH A 209 2.519 -4.838 -15.320 1.00 2.00 O HETATM 1033 O HOH A 210 37.644 7.589 -5.406 1.00 37.03 O HETATM 1034 O HOH A 211 7.502 9.269 -11.846 1.00 2.00 O HETATM 1035 O HOH A 212 5.058 0.361 -23.643 1.00 2.00 O HETATM 1036 O HOH A 213 7.426 5.361 -13.883 1.00 3.67 O HETATM 1037 O HOH A 214 14.274 -10.498 -18.318 1.00 12.31 O HETATM 1038 O HOH A 215 11.191 -4.589 -2.194 1.00 2.00 O HETATM 1039 O HOH A 216 14.227 17.128 -11.856 1.00 6.02 O HETATM 1040 O HOH A 217 28.551 -7.425 -14.488 1.00 2.00 O HETATM 1041 O HOH A 218 11.192 16.146 -8.179 1.00 3.23 O HETATM 1042 O HOH A 219 22.946 16.563 -1.740 1.00 6.05 O HETATM 1043 O HOH A 220 11.986 -8.874 -17.989 1.00 2.61 O HETATM 1044 O HOH A 221 21.204 0.472 -3.548 1.00 2.00 O HETATM 1045 O HOH A 222 23.252 -9.123 -3.190 1.00 4.05 O HETATM 1046 O HOH A 223 16.499 -8.856 -8.034 1.00 2.24 O HETATM 1047 O HOH A 224 23.585 -3.497 4.508 1.00 2.00 O HETATM 1048 O HOH A 225 15.128 5.819 -27.369 1.00 2.00 O HETATM 1049 O HOH A 226 27.596 -2.868 1.972 1.00 2.67 O HETATM 1050 O HOH A 227 24.967 -4.255 2.685 1.00 2.00 O HETATM 1051 O HOH A 228 23.571 4.515 0.302 1.00 2.00 O HETATM 1052 O HOH A 229 30.751 2.075 -22.108 1.00 2.00 O HETATM 1053 O HOH A 230 28.409 -4.043 -26.252 1.00 3.00 O HETATM 1054 O HOH A 231 6.887 0.294 -25.094 1.00 2.00 O HETATM 1055 O HOH A 232 25.426 -10.821 -27.569 1.00 7.48 O HETATM 1056 O HOH A 233 28.244 4.954 6.952 1.00 3.09 O HETATM 1057 O HOH A 234 24.732 6.047 -28.952 1.00 2.92 O HETATM 1058 O HOH A 235 24.952 6.794 2.287 1.00 3.10 O HETATM 1059 O HOH A 236 11.489 -7.372 -21.445 1.00 2.00 O HETATM 1060 O HOH A 237 27.316 6.095 -26.019 1.00 2.00 O HETATM 1061 O HOH A 238 26.165 -8.839 -16.832 1.00 6.19 O HETATM 1062 O HOH A 239 26.933 11.808 -3.677 1.00 6.41 O HETATM 1063 O HOH A 240 16.821 -0.415 1.096 1.00 7.50 O HETATM 1064 O HOH A 241 27.385 -7.433 -18.464 1.00 7.86 O HETATM 1065 O HOH A 242 4.519 3.802 -3.401 1.00 2.00 O HETATM 1066 O HOH A 243 5.012 -6.502 -13.881 1.00 2.00 O HETATM 1067 O HOH A 244 21.708 6.185 1.024 1.00 2.00 O HETATM 1068 O HOH A 245 22.048 -10.823 -10.492 1.00 5.93 O HETATM 1069 O HOH A 246 24.405 3.885 -29.008 1.00 2.00 O HETATM 1070 O HOH A 247 5.958 4.838 -11.987 1.00 21.13 O HETATM 1071 O HOH A 248 6.530 5.651 -7.778 1.00 8.16 O HETATM 1072 O HOH A 249 6.969 13.318 -8.596 1.00 5.10 O HETATM 1073 O HOH A 250 31.951 2.672 -6.216 1.00 3.96 O HETATM 1074 O HOH A 251 2.753 -6.295 -20.824 1.00 11.11 O HETATM 1075 O HOH A 252 7.570 5.091 -17.478 1.00 2.00 O HETATM 1076 O HOH A 253 22.816 7.934 -29.123 1.00 16.00 O HETATM 1077 O HOH A 254 18.866 7.947 -0.937 1.00 2.00 O HETATM 1078 O HOH A 255 8.849 -7.361 -19.895 1.00 2.00 O HETATM 1079 O HOH A 256 13.384 10.426 -4.379 1.00 25.76 O HETATM 1080 O HOH A 257 18.560 5.407 -30.148 1.00 5.80 O HETATM 1081 O HOH A 258 29.026 -5.216 -16.337 1.00 3.15 O HETATM 1082 O HOH A 259 36.136 -1.854 -9.792 1.00 13.60 O HETATM 1083 O HOH A 260 22.867 13.906 -18.939 1.00 6.51 O HETATM 1084 O HOH A 261 5.510 -4.851 -12.048 1.00 2.00 O HETATM 1085 O HOH A 262 3.767 3.286 -17.214 1.00 2.00 O HETATM 1086 O HOH A 263 7.625 -5.526 -2.296 1.00 2.00 O HETATM 1087 O HOH A 264 14.078 -7.937 -7.719 1.00 2.00 O HETATM 1088 O HOH A 265 16.698 -1.247 -25.072 1.00 2.00 O HETATM 1089 O HOH A 266 8.630 10.747 -14.562 1.00 2.00 O HETATM 1090 O HOH A 267 25.640 14.346 -19.753 1.00 2.11 O HETATM 1091 O HOH A 268 31.906 16.482 -10.864 1.00 2.00 O HETATM 1092 O HOH A 269 2.357 2.038 -19.888 1.00 8.06 O HETATM 1093 O HOH A 270 3.104 -10.164 -18.940 1.00 9.96 O HETATM 1094 O HOH A 271 32.394 -6.337 2.119 1.00 6.73 O HETATM 1095 O HOH A 272 27.212 -0.881 -28.009 1.00 16.09 O HETATM 1096 O HOH A 273 0.636 0.526 -7.316 1.00 16.23 O HETATM 1097 O HOH A 274 28.070 -14.302 -8.525 1.00 8.16 O HETATM 1098 O HOH A 275 15.887 -9.672 -10.767 1.00 11.73 O HETATM 1099 O HOH A 276 6.746 5.937 -20.946 1.00 8.25 O HETATM 1100 O HOH A 277 20.642 -10.786 -18.249 1.00 16.89 O HETATM 1101 O HOH A 278 11.747 4.187 -3.211 1.00 10.15 O HETATM 1102 O HOH A 279 32.852 0.157 4.467 1.00 2.00 O HETATM 1103 O HOH A 280 2.976 -7.172 -14.825 1.00 2.00 O HETATM 1104 O HOH A 281 24.257 0.251 6.595 1.00 2.00 O HETATM 1105 O HOH A 282 11.827 14.348 -5.999 1.00 3.37 O HETATM 1106 O HOH A 283 14.604 -1.693 1.346 1.00 2.70 O HETATM 1107 O HOH A 284 3.332 -3.211 -6.567 1.00 2.00 O HETATM 1108 O HOH A 285 30.029 -0.033 8.487 1.00 2.00 O HETATM 1109 O HOH A 286 12.897 -1.197 2.270 1.00 2.00 O HETATM 1110 O HOH A 287 25.134 -14.332 -13.703 1.00 2.00 O HETATM 1111 O HOH A 288 33.870 2.189 -8.050 1.00 2.06 O HETATM 1112 O HOH A 289 13.579 14.051 -5.236 1.00 9.03 O HETATM 1113 O HOH A 290 24.162 -11.807 -17.719 1.00 2.00 O HETATM 1114 O HOH A 291 2.041 -2.241 -22.303 1.00 2.56 O HETATM 1115 O HOH A 292 0.342 -2.325 -16.457 1.00 12.40 O CONECT 518 534 CONECT 523 524 526 537 CONECT 524 523 525 CONECT 525 524 527 CONECT 526 523 CONECT 527 525 528 533 CONECT 528 527 529 CONECT 529 528 530 CONECT 530 529 531 532 CONECT 531 530 CONECT 532 530 533 CONECT 533 527 532 CONECT 534 518 535 CONECT 535 534 536 538 CONECT 536 535 537 CONECT 537 523 536 CONECT 538 535 539 540 CONECT 539 538 CONECT 540 538 MASTER 314 0 1 6 5 0 0 6 1079 1 19 10 END