HEADER RNA BINDING PROTEIN 30-MAY-19 6P5R TITLE STRUCTURE OF T. BRUCEI MERS1-GDP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL EDITED MRNA STABILITY FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: MERS1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MERS1, 5' END PROCESSING, MRNA, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SCHUMACHER REVDAT 4 13-MAR-24 6P5R 1 REMARK REVDAT 3 01-JAN-20 6P5R 1 JRNL REVDAT 2 20-NOV-19 6P5R 1 JRNL REVDAT 1 06-NOV-19 6P5R 0 JRNL AUTH M.A.SCHUMACHER,M.HENDERSON,W.ZENG JRNL TITL STRUCTURES OF MERS1, THE 5' PROCESSING ENZYME OF JRNL TITL 2 MITOCHONDRIAL MRNAS INTRYPANOSOMA BRUCEI. JRNL REF RNA V. 26 69 2020 JRNL REFN ESSN 1469-9001 JRNL PMID 31704716 JRNL DOI 10.1261/RNA.072231.119 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 14927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1769 - 5.4427 0.94 1258 140 0.2009 0.2118 REMARK 3 2 5.4427 - 4.3225 0.99 1252 140 0.1733 0.1847 REMARK 3 3 4.3225 - 3.7769 1.00 1259 140 0.1974 0.2516 REMARK 3 4 3.7769 - 3.4319 1.00 1252 139 0.2368 0.2935 REMARK 3 5 3.4319 - 3.1860 0.99 1238 137 0.2623 0.2819 REMARK 3 6 3.1860 - 2.9983 0.99 1233 138 0.2750 0.3193 REMARK 3 7 2.9983 - 2.8482 1.00 1235 136 0.2750 0.3182 REMARK 3 8 2.8482 - 2.7243 0.99 1215 136 0.2911 0.3126 REMARK 3 9 2.7243 - 2.6194 0.99 1218 135 0.3153 0.3801 REMARK 3 10 2.6194 - 2.5291 0.96 1184 132 0.3205 0.3432 REMARK 3 11 2.5291 - 2.4500 0.88 1089 121 0.3638 0.3669 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2570 REMARK 3 ANGLE : 0.666 3509 REMARK 3 CHIRALITY : 0.044 375 REMARK 3 PLANARITY : 0.003 448 REMARK 3 DIHEDRAL : 5.181 1535 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 331:337 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.181 -1.074 -8.826 REMARK 3 T TENSOR REMARK 3 T11: 0.6438 T22: 1.2557 REMARK 3 T33: 0.8700 T12: -0.0998 REMARK 3 T13: 0.0284 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 2.8262 L22: 7.9416 REMARK 3 L33: 4.2611 L12: -4.4269 REMARK 3 L13: -1.7962 L23: 1.0888 REMARK 3 S TENSOR REMARK 3 S11: 0.3193 S12: -1.0292 S13: 0.5769 REMARK 3 S21: -0.2539 S22: 0.6614 S23: -0.4956 REMARK 3 S31: 0.0695 S32: 1.1218 S33: -0.3012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 338:345 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.525 -10.734 -13.348 REMARK 3 T TENSOR REMARK 3 T11: 0.6403 T22: 1.2636 REMARK 3 T33: 0.9166 T12: 0.2135 REMARK 3 T13: 0.1437 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 3.7631 L22: 6.7448 REMARK 3 L33: 6.3723 L12: -0.0270 REMARK 3 L13: 4.3135 L23: -3.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.2950 S12: -0.2017 S13: -0.8386 REMARK 3 S21: 0.3665 S22: 0.3071 S23: -2.4104 REMARK 3 S31: -0.2674 S32: 1.1097 S33: 0.1477 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 406:424 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.091 11.678 -19.262 REMARK 3 T TENSOR REMARK 3 T11: 1.3011 T22: 0.8734 REMARK 3 T33: 0.7861 T12: 0.1120 REMARK 3 T13: 0.1295 T23: 0.1202 REMARK 3 L TENSOR REMARK 3 L11: 0.2250 L22: 0.3326 REMARK 3 L33: 0.8980 L12: -0.1430 REMARK 3 L13: -0.2747 L23: 0.0386 REMARK 3 S TENSOR REMARK 3 S11: -0.1134 S12: 0.3071 S13: 0.6463 REMARK 3 S21: -0.6645 S22: -0.5173 S23: -0.0921 REMARK 3 S31: -0.1787 S32: -0.2505 S33: -0.0233 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 426:522 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.094 2.560 -16.679 REMARK 3 T TENSOR REMARK 3 T11: 0.5966 T22: 0.4478 REMARK 3 T33: 0.3900 T12: 0.0239 REMARK 3 T13: 0.0205 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 2.1604 L22: 5.5156 REMARK 3 L33: 3.6390 L12: -0.3060 REMARK 3 L13: 1.5296 L23: 0.3105 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: 0.3430 S13: 0.3075 REMARK 3 S21: -0.9121 S22: -0.1972 S23: -0.2594 REMARK 3 S31: -0.3137 S32: 0.0520 S33: 0.2197 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 523:623 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.075 -20.333 -9.323 REMARK 3 T TENSOR REMARK 3 T11: 0.6903 T22: 0.4807 REMARK 3 T33: 0.4701 T12: 0.0103 REMARK 3 T13: 0.1361 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.4487 L22: 3.9382 REMARK 3 L33: 4.4794 L12: -0.1521 REMARK 3 L13: 0.7187 L23: -0.0886 REMARK 3 S TENSOR REMARK 3 S11: -0.1163 S12: 0.1050 S13: -0.2726 REMARK 3 S21: -0.5973 S22: -0.0730 S23: -0.3983 REMARK 3 S31: 0.6203 S32: 0.1691 S33: 0.1748 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 624:710 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.285 -27.396 0.823 REMARK 3 T TENSOR REMARK 3 T11: 0.9533 T22: 0.6044 REMARK 3 T33: 0.7157 T12: -0.0071 REMARK 3 T13: 0.0271 T23: 0.1151 REMARK 3 L TENSOR REMARK 3 L11: 3.4680 L22: 3.0724 REMARK 3 L33: 4.0854 L12: -0.1242 REMARK 3 L13: 2.0095 L23: 1.6739 REMARK 3 S TENSOR REMARK 3 S11: 0.1939 S12: -0.1292 S13: -0.5327 REMARK 3 S21: 0.1483 S22: -0.1862 S23: -0.4342 REMARK 3 S31: 0.8985 S32: 0.1391 S33: 0.0421 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 77.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.27500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MAGNESIUM FORMATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.98200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.98200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.40750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.22650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.40750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.22650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.98200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.40750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.22650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.98200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.40750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.22650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 286 REMARK 465 GLY A 287 REMARK 465 SER A 288 REMARK 465 SER A 289 REMARK 465 HIS A 290 REMARK 465 HIS A 291 REMARK 465 HIS A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 SER A 296 REMARK 465 SER A 297 REMARK 465 GLY A 298 REMARK 465 LEU A 299 REMARK 465 VAL A 300 REMARK 465 PRO A 301 REMARK 465 ARG A 302 REMARK 465 GLY A 303 REMARK 465 SER A 304 REMARK 465 HIS A 305 REMARK 465 MET A 306 REMARK 465 ASP A 307 REMARK 465 ASP A 308 REMARK 465 ALA A 309 REMARK 465 LEU A 310 REMARK 465 ARG A 311 REMARK 465 GLY A 312 REMARK 465 GLU A 313 REMARK 465 LEU A 314 REMARK 465 ALA A 315 REMARK 465 MET A 316 REMARK 465 GLY A 317 REMARK 465 SER A 318 REMARK 465 SER A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 HIS A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 GLY A 328 REMARK 465 LEU A 329 REMARK 465 VAL A 330 REMARK 465 SER A 376 REMARK 465 ALA A 377 REMARK 465 LEU A 378 REMARK 465 ASP A 379 REMARK 465 THR A 380 REMARK 465 GLU A 381 REMARK 465 GLY A 382 REMARK 465 HIS A 383 REMARK 465 ALA A 384 REMARK 465 LEU A 385 REMARK 465 PRO A 386 REMARK 465 PHE A 387 REMARK 465 ASP A 388 REMARK 465 VAL A 389 REMARK 465 HIS A 390 REMARK 465 LEU A 391 REMARK 465 GLN A 392 REMARK 465 GLN A 393 REMARK 465 PRO A 394 REMARK 465 HIS A 395 REMARK 465 SER A 396 REMARK 465 SER A 397 REMARK 465 GLY A 398 REMARK 465 ASP A 399 REMARK 465 GLY A 400 REMARK 465 THR A 401 REMARK 465 ALA A 402 REMARK 465 GLY A 403 REMARK 465 ASP A 404 REMARK 465 THR A 405 REMARK 465 ASN A 425 REMARK 465 VAL A 475 REMARK 465 LYS A 476 REMARK 465 GLY A 477 REMARK 465 SER A 478 REMARK 465 GLY A 479 REMARK 465 SER A 480 REMARK 465 ASP A 481 REMARK 465 ASP A 482 REMARK 465 GLY A 483 REMARK 465 ASP A 484 REMARK 465 GLY A 485 REMARK 465 ASP A 711 REMARK 465 GLY A 712 REMARK 465 SER A 713 REMARK 465 ILE A 714 REMARK 465 THR A 715 REMARK 465 PRO A 716 REMARK 465 SER A 717 REMARK 465 THR A 718 REMARK 465 GLY A 719 REMARK 465 ASN A 720 REMARK 465 GLY A 721 REMARK 465 GLU A 722 REMARK 465 ASP A 723 REMARK 465 ALA A 724 REMARK 465 SER A 725 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 331 CG CD REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 SER A 334 OG REMARK 470 HIS A 335 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 406 CB OG REMARK 470 LEU A 422 CG CD1 CD2 REMARK 470 ASP A 495 CG OD1 OD2 REMARK 470 LEU A 536 CG CD1 CD2 REMARK 470 GLU A 541 CG CD OE1 OE2 REMARK 470 GLU A 631 CG CD OE1 OE2 REMARK 470 ALA A 664 CB REMARK 470 LYS A 674 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 442 -86.83 -129.32 REMARK 500 LYS A 569 -111.92 -119.98 REMARK 500 TYR A 611 56.60 -109.18 REMARK 500 VAL A 636 64.77 31.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6NL1 RELATED DB: PDB REMARK 900 APO FORM DBREF 6P5R A 337 725 UNP B6SBM0 B6SBM0_9TRYP 37 395 SEQADV 6P5R MET A 286 UNP B6SBM0 INITIATING METHIONINE SEQADV 6P5R GLY A 287 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R SER A 288 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R SER A 289 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 290 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 291 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 292 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 293 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 294 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 295 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R SER A 296 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R SER A 297 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R GLY A 298 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R LEU A 299 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R VAL A 300 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R PRO A 301 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R ARG A 302 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R GLY A 303 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R SER A 304 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 305 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R MET A 306 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R ASP A 307 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R ASP A 308 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R ALA A 309 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R LEU A 310 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R ARG A 311 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R GLY A 312 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R GLU A 313 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R LEU A 314 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R ALA A 315 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R MET A 316 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R GLY A 317 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R SER A 318 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R SER A 319 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 320 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 321 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 322 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 323 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 324 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 325 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R SER A 326 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R SER A 327 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R GLY A 328 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R LEU A 329 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R VAL A 330 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R PRO A 331 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R ARG A 332 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R GLY A 333 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R SER A 334 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R HIS A 335 UNP B6SBM0 EXPRESSION TAG SEQADV 6P5R MET A 336 UNP B6SBM0 EXPRESSION TAG SEQRES 1 A 410 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 410 LEU VAL PRO ARG GLY SER HIS MET ASP ASP ALA LEU ARG SEQRES 3 A 410 GLY GLU LEU ALA MET GLY SER SER HIS HIS HIS HIS HIS SEQRES 4 A 410 HIS SER SER GLY LEU VAL PRO ARG GLY SER HIS MET ASP SEQRES 5 A 410 ASP ALA LEU ARG GLY GLU LEU ALA SER ALA LEU ASP THR SEQRES 6 A 410 GLU GLY HIS ALA LEU PRO PHE ASP VAL HIS LEU GLN GLN SEQRES 7 A 410 PRO HIS SER SER GLY ASP GLY THR ALA GLY ASP THR SER SEQRES 8 A 410 THR ILE GLN LEU GLU LYS LEU SER HIS PRO PRO ALA ARG SEQRES 9 A 410 PHE ASP LEU LEU THR ASN SER PHE VAL TYR LYS TRP GLN SEQRES 10 A 410 THR LYS ALA ALA LEU ALA ARG LYS VAL SER GLY PRO MET SEQRES 11 A 410 ARG GLU TRP ALA ALA GLU LEU LYS TYR ARG THR GLY VAL SEQRES 12 A 410 HIS ILE GLU LEU GLU PRO THR TYR PRO GLU ARG LEU SER SEQRES 13 A 410 GLU ASN ALA VAL LYS GLY SER GLY SER ASP ASP GLY ASP SEQRES 14 A 410 GLY THR GLN TRP GLY ALA TYR GLU THR ALA ASP ASP VAL SEQRES 15 A 410 ASP ILE THR VAL TYR LEU PHE GLY SER GLU ARG GLY ILE SEQRES 16 A 410 PHE ASN CYS HIS LYS LEU MET GLU ALA ALA ILE GLN GLN SEQRES 17 A 410 ASP PRO VAL TYR VAL ARG LEU GLY ILE PHE ARG ARG LEU SEQRES 18 A 410 ALA ASN SER SER GLU VAL GLU TRP LEU MET LEU ARG ARG SEQRES 19 A 410 ILE ASN ARG GLU LEU ARG PRO PRO ASP ILE PRO PRO ILE SEQRES 20 A 410 SER LEU LYS LEU PRO GLY LYS TRP THR LEU LEU TYR GLU SEQRES 21 A 410 ARG TYR LYS GLU ALA ALA ILE ARG THR LEU TRP GLU GLU SEQRES 22 A 410 THR GLY ILE THR VAL ASP ALA SER ASN VAL TYR PRO THR SEQRES 23 A 410 GLY HIS LEU TYR GLN THR VAL PRO GLN TYR TYR TRP ARG SEQRES 24 A 410 VAL PRO VAL ARG TYR PHE VAL ALA GLU VAL PRO SER ASP SEQRES 25 A 410 ILE ARG VAL GLU GLY PRO GLN VAL VAL PRO LEU GLN TYR SEQRES 26 A 410 MET ARG ASN TRP ASP ALA ARG LEU LEU ARG GLN SER PRO SEQRES 27 A 410 ASP PRO ILE ASP ARG ALA TRP ALA GLN LEU ALA ASP PRO SEQRES 28 A 410 ALA THR GLY CYS ALA TRP MET LYS ALA SER MET ILE ASP SEQRES 29 A 410 GLN LEU GLN LYS PRO LEU ARG GLY ASP ASN TYR MET ALA SEQRES 30 A 410 ILE ARG TYR THR PRO PRO PRO TYR SER ASN LEU GLN GLU SEQRES 31 A 410 VAL VAL GLY LEU GLY ASP GLY SER ILE THR PRO SER THR SEQRES 32 A 410 GLY ASN GLY GLU ASP ALA SER HET GDP A 801 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 HOH *10(H2 O) HELIX 1 AA1 PRO A 331 ARG A 341 1 11 HELIX 2 AA2 PRO A 417 ASP A 421 5 5 HELIX 3 AA3 ALA A 435 ARG A 439 1 5 HELIX 4 AA4 LYS A 440 SER A 442 5 3 HELIX 5 AA5 ARG A 446 GLY A 457 1 12 HELIX 6 AA6 TYR A 466 GLU A 472 5 7 HELIX 7 AA7 SER A 506 ILE A 521 1 16 HELIX 8 AA8 ARG A 576 GLY A 590 1 15 HELIX 9 AA9 ASP A 594 VAL A 598 5 5 HELIX 10 AB1 VAL A 608 TYR A 612 5 5 HELIX 11 AB2 VAL A 636 TYR A 640 5 5 HELIX 12 AB3 ASP A 645 ARG A 650 1 6 HELIX 13 AB4 ASP A 654 ALA A 664 1 11 HELIX 14 AB5 ALA A 675 GLY A 687 1 13 HELIX 15 AB6 ASN A 689 TYR A 695 1 7 HELIX 16 AB7 PRO A 698 ASN A 702 5 5 HELIX 17 AB8 LEU A 703 GLY A 708 1 6 SHEET 1 AA1 4 GLU A 411 LYS A 412 0 SHEET 2 AA1 4 PHE A 427 LYS A 434 -1 O LYS A 430 N GLU A 411 SHEET 3 AA1 4 ASP A 498 GLY A 505 -1 O GLY A 505 N PHE A 427 SHEET 4 AA1 4 HIS A 459 PRO A 464 -1 N GLU A 461 O TYR A 502 SHEET 1 AA2 5 ILE A 562 LYS A 565 0 SHEET 2 AA2 5 VAL A 542 ILE A 550 -1 N LEU A 547 O LYS A 565 SHEET 3 AA2 5 TYR A 527 ARG A 535 -1 N ARG A 534 O GLU A 543 SHEET 4 AA2 5 VAL A 617 GLU A 623 1 O PHE A 620 N GLY A 531 SHEET 5 AA2 5 TYR A 599 LEU A 604 -1 N GLY A 602 O TYR A 619 SHEET 1 AA3 3 ILE A 562 LYS A 565 0 SHEET 2 AA3 3 VAL A 542 ILE A 550 -1 N LEU A 547 O LYS A 565 SHEET 3 AA3 3 CYS A 670 LYS A 674 -1 O MET A 673 N TRP A 544 SITE 1 AC1 15 PRO A 444 TYR A 527 ARG A 529 LEU A 604 SITE 2 AC1 15 TYR A 605 GLN A 606 ARG A 614 VAL A 615 SITE 3 AC1 15 TYR A 619 ARG A 686 TYR A 690 ARG A 694 SITE 4 AC1 15 HOH A 901 HOH A 903 HOH A 906 CRYST1 90.815 114.453 77.964 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012826 0.00000