HEADER MEMBRANE PROTEIN, METAL TRANSPORT 04-JUN-19 6P6X TITLE CRYSTAL STRUCTURE OF VOLTAGE-GATED SODIUM CHANNEL NAVAB G94C/Q150C TITLE 2 MUTANT IN THE ACTIVATED STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCOBACTER BUTZLERI (STRAIN RM4018); SOURCE 3 ORGANISM_TAXID: 367737; SOURCE 4 STRAIN: RM4018; SOURCE 5 VARIANT: RM4018; SOURCE 6 GENE: ABU_1752; SOURCE 7 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS ION CHANNEL, ION TRANSPORT PROTEIN, MEMBRANE PROTEIN, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR G.WISEDCHAISRI,L.TONGGU,E.MCCORD,T.M.GAMAL EL-DIN,L.WANG,N.ZHENG, AUTHOR 2 W.A.CATTERALL REVDAT 4 11-OCT-23 6P6X 1 REMARK REVDAT 3 20-NOV-19 6P6X 1 REMARK REVDAT 2 21-AUG-19 6P6X 1 JRNL REVDAT 1 14-AUG-19 6P6X 0 JRNL AUTH G.WISEDCHAISRI,L.TONGGU,E.MCCORD,T.M.GAMAL EL-DIN,L.WANG, JRNL AUTH 2 N.ZHENG,W.A.CATTERALL JRNL TITL RESTING-STATE STRUCTURE AND GATING MECHANISM OF A JRNL TITL 2 VOLTAGE-GATED SODIUM CHANNEL. JRNL REF CELL V. 178 993 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 31353218 JRNL DOI 10.1016/J.CELL.2019.06.031 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.2 REMARK 3 NUMBER OF REFLECTIONS : 15906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 851 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 208 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 14.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1817 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 342 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.347 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.292 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.800 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2213 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2309 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2972 ; 1.741 ; 1.663 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5338 ; 1.182 ; 1.541 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 6.884 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;32.140 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 307 ;20.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.125 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2080 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 450 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 912 ; 3.798 ; 3.754 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 911 ; 3.788 ; 3.749 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1137 ; 5.862 ; 5.613 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1138 ; 5.860 ; 5.620 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1300 ; 4.597 ; 4.920 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1301 ; 4.596 ; 4.923 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1835 ; 7.340 ; 7.170 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2380 ; 9.478 ;48.206 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2381 ; 9.476 ;48.237 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6P6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000240429. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19146 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE 0.1 M SODIUM REMARK 280 CITRATE PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.22450 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.22450 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 96.66950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 62.22450 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 62.22450 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 96.66950 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.22450 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 62.22450 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 96.66950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 62.22450 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.22450 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 96.66950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 62.22450 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.22450 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 96.66950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.22450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 62.22450 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 96.66950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 62.22450 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 62.22450 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 96.66950 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.22450 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.22450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 96.66950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 50300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -320.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -124.44900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -124.44900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -124.44900 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -124.44900 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 983 REMARK 465 ASP A 984 REMARK 465 TYR A 985 REMARK 465 LYS A 986 REMARK 465 ASP A 987 REMARK 465 ASP A 988 REMARK 465 ASP A 989 REMARK 465 ASP A 990 REMARK 465 LYS A 991 REMARK 465 GLY A 992 REMARK 465 SER A 993 REMARK 465 LEU A 994 REMARK 465 VAL A 995 REMARK 465 PRO A 996 REMARK 465 ARG A 997 REMARK 465 THR A 1091 REMARK 465 SER A 1092 REMARK 465 SER A 1093 REMARK 465 CYS A 1094 REMARK 465 PHE A 1095 REMARK 465 HIS A 1231 REMARK 465 ILE A 1232 REMARK 465 ILE A 1233 REMARK 465 ASP A 1234 REMARK 465 GLU A 1235 REMARK 465 VAL A 1236 REMARK 465 GLN A 1237 REMARK 465 SER A 1238 REMARK 465 HIS A 1239 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1004 CG CD NE CZ NH1 NH2 REMARK 470 PHE A1013 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A1035 CG CD CE NZ REMARK 470 GLN A1039 CG CD OE1 NE2 REMARK 470 VAL A1043 CG1 CG2 REMARK 470 LEU A1047 CG CD1 CD2 REMARK 470 TYR A1065 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A1096 CG CD OE1 OE2 REMARK 470 GLN A1226 CG CD OE1 NE2 REMARK 470 LYS A1227 CG CD CE NZ REMARK 470 GLU A1229 CG CD OE1 OE2 REMARK 470 GLN A1230 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 1189 OE1 GLU A 1189 5454 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A1189 CD GLU A1189 OE1 0.085 REMARK 500 GLU A1189 CD GLU A1189 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 999 -175.19 -69.37 REMARK 500 TYR A1002 -71.72 -36.46 REMARK 500 SER A1012 -76.79 -49.17 REMARK 500 SER A1040 -73.22 -78.40 REMARK 500 ARG A1068 -151.47 68.22 REMARK 500 VAL A1089 130.11 -34.03 REMARK 500 PHE A1160 3.20 -151.72 REMARK 500 SER A1180 -63.28 -95.95 REMARK 500 ILE A1183 -63.09 -134.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PX4 A 2001 REMARK 610 PX4 A 2002 REMARK 610 PX4 A 2004 REMARK 610 PX4 A 2005 REMARK 610 PX4 A 2006 REMARK 610 PX4 A 2007 REMARK 610 PX4 A 2008 REMARK 610 PX4 A 2009 REMARK 610 CPS A 2010 REMARK 610 CPS A 2011 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 2008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 2009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 2010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CPS A 2011 DBREF 6P6X A 1001 1239 UNP A8EVM5 A8EVM5_ARCB4 1 239 SEQADV 6P6X MET A 983 UNP A8EVM5 INITIATING METHIONINE SEQADV 6P6X ASP A 984 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X TYR A 985 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X LYS A 986 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X ASP A 987 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X ASP A 988 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X ASP A 989 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X ASP A 990 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X LYS A 991 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X GLY A 992 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X SER A 993 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X LEU A 994 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X VAL A 995 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X PRO A 996 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X ARG A 997 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X GLY A 998 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X SER A 999 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X HIS A 1000 UNP A8EVM5 EXPRESSION TAG SEQADV 6P6X CYS A 1094 UNP A8EVM5 GLY 94 ENGINEERED MUTATION SEQADV 6P6X CYS A 1150 UNP A8EVM5 GLN 150 ENGINEERED MUTATION SEQRES 1 A 257 MET ASP TYR LYS ASP ASP ASP ASP LYS GLY SER LEU VAL SEQRES 2 A 257 PRO ARG GLY SER HIS MET TYR LEU ARG ILE THR ASN ILE SEQRES 3 A 257 VAL GLU SER SER PHE PHE THR LYS PHE ILE ILE TYR LEU SEQRES 4 A 257 ILE VAL LEU ASN GLY ILE THR MET GLY LEU GLU THR SER SEQRES 5 A 257 LYS THR PHE MET GLN SER PHE GLY VAL TYR THR THR LEU SEQRES 6 A 257 PHE ASN GLN ILE VAL ILE THR ILE PHE THR ILE GLU ILE SEQRES 7 A 257 ILE LEU ARG ILE TYR VAL HIS ARG ILE SER PHE PHE LYS SEQRES 8 A 257 ASP PRO TRP SER LEU PHE ASP PHE PHE VAL VAL ALA ILE SEQRES 9 A 257 SER LEU VAL PRO THR SER SER CYS PHE GLU ILE LEU ARG SEQRES 10 A 257 VAL LEU ARG VAL LEU ARG LEU PHE ARG LEU VAL THR ALA SEQRES 11 A 257 VAL PRO GLN MET ARG LYS ILE VAL SER ALA LEU ILE SER SEQRES 12 A 257 VAL ILE PRO GLY MET LEU SER VAL ILE ALA LEU MET THR SEQRES 13 A 257 LEU PHE PHE TYR ILE PHE ALA ILE MET ALA THR CYS LEU SEQRES 14 A 257 PHE GLY GLU ARG PHE PRO GLU TRP PHE GLY THR LEU GLY SEQRES 15 A 257 GLU SER PHE TYR THR LEU PHE GLN VAL MET THR LEU GLU SEQRES 16 A 257 SER TRP SER MET GLY ILE VAL ARG PRO LEU MET GLU VAL SEQRES 17 A 257 TYR PRO TYR ALA TRP VAL PHE PHE ILE PRO PHE ILE PHE SEQRES 18 A 257 VAL VAL THR PHE VAL MET ILE ASN LEU VAL VAL ALA ILE SEQRES 19 A 257 ILE VAL ASP ALA MET ALA ILE LEU ASN GLN LYS GLU GLU SEQRES 20 A 257 GLN HIS ILE ILE ASP GLU VAL GLN SER HIS HET PX4 A2001 44 HET PX4 A2002 42 HET PX4 A2003 46 HET PX4 A2004 40 HET PX4 A2005 36 HET PX4 A2006 32 HET PX4 A2007 19 HET PX4 A2008 8 HET PX4 A2009 21 HET CPS A2010 25 HET CPS A2011 29 HETNAM PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETNAM CPS 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- HETNAM 2 CPS PROPANESULFONATE HETSYN CPS CHAPS FORMUL 2 PX4 9(C36 H73 N O8 P 1+) FORMUL 11 CPS 2(C32 H58 N2 O7 S) HELIX 1 AA1 SER A 999 GLU A 1010 1 12 HELIX 2 AA2 SER A 1011 GLU A 1032 1 22 HELIX 3 AA3 SER A 1034 ARG A 1068 1 35 HELIX 4 AA4 ILE A 1069 LYS A 1073 5 5 HELIX 5 AA5 ASP A 1074 SER A 1087 1 14 HELIX 6 AA6 ILE A 1097 ARG A 1102 1 6 HELIX 7 AA7 VAL A 1103 LEU A 1106 5 4 HELIX 8 AA8 PHE A 1107 VAL A 1113 1 7 HELIX 9 AA9 VAL A 1113 VAL A 1126 1 14 HELIX 10 AB1 ILE A 1127 GLY A 1129 5 3 HELIX 11 AB2 MET A 1130 GLY A 1153 1 24 HELIX 12 AB3 PHE A 1156 GLY A 1161 1 6 HELIX 13 AB4 THR A 1162 THR A 1175 1 14 HELIX 14 AB5 ILE A 1183 GLU A 1189 1 7 HELIX 15 AB6 VAL A 1190 TYR A 1193 5 4 HELIX 16 AB7 ALA A 1194 GLU A 1228 1 35 SITE 1 AC1 12 ILE A1134 PHE A1141 GLY A1164 GLU A1165 SITE 2 AC1 12 PHE A1167 MET A1188 PRO A1192 TRP A1195 SITE 3 AC1 12 MET A1209 LEU A1212 PX4 A2002 PX4 A2009 SITE 1 AC2 12 GLY A1026 GLY A1030 SER A1034 LYS A1035 SITE 2 AC2 12 THR A1036 LEU A1106 THR A1138 TYR A1142 SITE 3 AC2 12 THR A1162 GLY A1164 PX4 A2001 CPS A2010 SITE 1 AC3 12 PHE A1144 MET A1147 PHE A1152 ARG A1155 SITE 2 AC3 12 VAL A1190 TYR A1191 TYR A1193 ALA A1194 SITE 3 AC3 12 VAL A1196 VAL A1204 PX4 A2004 PX4 A2006 SITE 1 AC4 10 PRO A1075 TRP A1076 PHE A1079 VAL A1120 SITE 2 AC4 10 SER A1121 ILE A1124 PX4 A2003 PX4 A2006 SITE 3 AC4 10 PX4 A2007 PX4 A2009 SITE 1 AC5 2 MET A1116 PX4 A2006 SITE 1 AC6 6 PRO A1128 PX4 A2003 PX4 A2004 PX4 A2005 SITE 2 AC6 6 PX4 A2007 PX4 A2009 SITE 1 AC7 2 PX4 A2004 PX4 A2006 SITE 1 AC8 1 PHE A1082 SITE 1 AC9 6 MET A1130 PHE A1203 PHE A1207 PX4 A2001 SITE 2 AC9 6 PX4 A2004 PX4 A2006 SITE 1 AD1 4 LEU A1031 THR A1036 PHE A1037 PX4 A2002 SITE 1 AD2 4 SER A1012 ALA A1112 PRO A1114 GLN A1115 CRYST1 124.449 124.449 193.339 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008035 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008035 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005172 0.00000