HEADER HYDROLASE 04-JUN-19 6P74 TITLE OLD NUCLEASE FROM THERMUS SCOTODUCTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ATP-DEPENDENT ENDONUCLEASE OF THE OLD FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS SCOTODUCTUS; SOURCE 3 ORGANISM_TAXID: 37636; SOURCE 4 GENE: TSC_C04750; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ABC ATPASE, NUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.CHAPPIE,C.J.SCHILTZ REVDAT 4 13-MAR-24 6P74 1 LINK REVDAT 3 18-MAR-20 6P74 1 JRNL REVDAT 2 19-FEB-20 6P74 1 JRNL REVDAT 1 29-JAN-20 6P74 0 JRNL AUTH C.J.SCHILTZ,M.C.ADAMS,J.S.CHAPPIE JRNL TITL THE FULL-LENGTH STRUCTURE OF THERMUS SCOTODUCTUS OLD DEFINES JRNL TITL 2 THE ATP HYDROLYSIS PROPERTIES AND CATALYTIC MECHANISM OF JRNL TITL 3 CLASS 1 OLD FAMILY NUCLEASES. JRNL REF NUCLEIC ACIDS RES. V. 48 2762 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32009148 JRNL DOI 10.1093/NAR/GKAA059 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.640 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 44131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 4000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1101.4842 - 6.7586 1.00 2785 121 0.1368 0.1520 REMARK 3 2 6.7586 - 5.3646 1.00 2822 118 0.1754 0.1973 REMARK 3 3 5.3646 - 4.6865 1.00 2740 161 0.1481 0.1551 REMARK 3 4 4.6865 - 4.2580 1.00 2804 129 0.1488 0.1731 REMARK 3 5 4.2580 - 3.9528 1.00 2756 150 0.1637 0.1881 REMARK 3 6 3.9528 - 3.7197 1.00 2825 136 0.1758 0.2476 REMARK 3 7 3.7197 - 3.5334 1.00 2750 136 0.1923 0.2614 REMARK 3 8 3.5334 - 3.3796 1.00 2765 122 0.2154 0.3009 REMARK 3 9 3.3796 - 3.2495 1.00 2796 141 0.2403 0.2627 REMARK 3 10 3.2495 - 3.1374 1.00 2800 136 0.2391 0.3370 REMARK 3 11 3.1374 - 3.0392 1.00 2783 138 0.2438 0.3279 REMARK 3 12 3.0392 - 2.9524 1.00 2750 127 0.2498 0.3187 REMARK 3 13 2.9524 - 2.8746 1.00 2805 100 0.2405 0.2674 REMARK 3 14 2.8746 - 2.8045 1.00 2757 159 0.2343 0.3034 REMARK 3 15 2.8045 - 2.7407 1.00 2760 167 0.2466 0.2841 REMARK 3 16 2.7407 - 2.6824 1.00 2717 141 0.2733 0.3345 REMARK 3 17 2.6824 - 2.6287 1.00 2827 154 0.2811 0.3170 REMARK 3 18 2.6287 - 2.5791 1.00 2721 181 0.2748 0.3387 REMARK 3 19 2.5791 - 2.5331 1.00 2766 149 0.2661 0.2917 REMARK 3 20 2.5331 - 2.4901 1.00 2846 102 0.2727 0.2652 REMARK 3 21 2.4901 - 2.4500 1.00 2730 155 0.2712 0.3028 REMARK 3 22 2.4500 - 2.4123 1.00 2737 136 0.2813 0.2789 REMARK 3 23 2.4123 - 2.3768 1.00 2791 142 0.2836 0.3375 REMARK 3 24 2.3768 - 2.3433 1.00 2825 125 0.2936 0.3001 REMARK 3 25 2.3433 - 2.3116 0.99 2696 157 0.3021 0.3485 REMARK 3 26 2.3116 - 2.2816 0.99 2787 144 0.3112 0.3447 REMARK 3 27 2.2816 - 2.2531 0.90 2478 138 0.4271 0.4368 REMARK 3 28 2.2531 - 2.2259 0.91 2573 115 0.4220 0.3982 REMARK 3 29 2.2259 - 2.2001 0.87 2360 120 0.4329 0.4384 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.795 57.528 141.558 REMARK 3 T TENSOR REMARK 3 T11: 0.9042 T22: 0.4966 REMARK 3 T33: 0.5618 T12: 0.1648 REMARK 3 T13: 0.0864 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 3.1764 L22: 5.8612 REMARK 3 L33: 6.3590 L12: 0.9589 REMARK 3 L13: 1.7058 L23: 3.1284 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.3691 S13: -0.1678 REMARK 3 S21: 1.3844 S22: 0.0301 S23: -0.0552 REMARK 3 S31: 0.4679 S32: 0.1967 S33: -0.0707 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 68:141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.463 69.736 137.751 REMARK 3 T TENSOR REMARK 3 T11: 0.9491 T22: 0.5755 REMARK 3 T33: 0.8761 T12: 0.1649 REMARK 3 T13: 0.1438 T23: -0.0892 REMARK 3 L TENSOR REMARK 3 L11: 4.2656 L22: 5.9313 REMARK 3 L33: 7.0729 L12: 0.0392 REMARK 3 L13: 0.8473 L23: -0.6741 REMARK 3 S TENSOR REMARK 3 S11: -0.2657 S12: -0.2455 S13: 0.7407 REMARK 3 S21: 0.7161 S22: -0.1137 S23: 0.1237 REMARK 3 S31: -0.6059 S32: 0.0310 S33: 0.4104 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 142:153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.738 45.624 146.253 REMARK 3 T TENSOR REMARK 3 T11: 1.5859 T22: 1.3171 REMARK 3 T33: 1.3366 T12: 0.0478 REMARK 3 T13: 0.2808 T23: 0.1315 REMARK 3 L TENSOR REMARK 3 L11: 4.1220 L22: 3.3046 REMARK 3 L33: 3.2077 L12: -2.0398 REMARK 3 L13: 0.3424 L23: 2.4392 REMARK 3 S TENSOR REMARK 3 S11: -0.4509 S12: -1.2753 S13: 0.8820 REMARK 3 S21: -0.6643 S22: 0.1504 S23: -0.2517 REMARK 3 S31: 0.9519 S32: 0.7014 S33: 0.2810 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 154:208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.669 58.659 154.996 REMARK 3 T TENSOR REMARK 3 T11: 0.6388 T22: 0.7996 REMARK 3 T33: 0.9982 T12: 0.1381 REMARK 3 T13: 0.0372 T23: -0.1544 REMARK 3 L TENSOR REMARK 3 L11: 0.5199 L22: 2.7949 REMARK 3 L33: 5.8331 L12: 0.5283 REMARK 3 L13: 1.3163 L23: 2.8865 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: -0.1120 S13: 0.1171 REMARK 3 S21: -0.2737 S22: -0.4790 S23: 0.5153 REMARK 3 S31: -0.2791 S32: -0.8929 S33: 0.4867 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 209:237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.055 57.430 153.365 REMARK 3 T TENSOR REMARK 3 T11: 0.6065 T22: 0.7670 REMARK 3 T33: 0.8558 T12: 0.0006 REMARK 3 T13: -0.0001 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 6.6481 L22: 1.3428 REMARK 3 L33: 8.1797 L12: 0.9919 REMARK 3 L13: 1.8685 L23: 3.3050 REMARK 3 S TENSOR REMARK 3 S11: -0.1513 S12: 0.1506 S13: 0.4909 REMARK 3 S21: -0.3721 S22: -0.6793 S23: 0.7130 REMARK 3 S31: -0.6636 S32: -0.1424 S33: 0.8851 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 245:245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.410 34.287 151.408 REMARK 3 T TENSOR REMARK 3 T11: 1.8471 T22: 1.4971 REMARK 3 T33: 0.7882 T12: 0.1519 REMARK 3 T13: -0.3751 T23: 0.1954 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: 2.0000 REMARK 3 L13: 2.0000 L23: 2.0000 REMARK 3 S TENSOR REMARK 3 S11: 2.5860 S12: -9.9143 S13: -6.9103 REMARK 3 S21: 8.9734 S22: -2.6202 S23: -4.2353 REMARK 3 S31: 22.4683 S32: 7.6903 S33: -0.0081 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 246:318 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.930 43.074 132.434 REMARK 3 T TENSOR REMARK 3 T11: 0.5744 T22: 0.6324 REMARK 3 T33: 0.6019 T12: 0.1028 REMARK 3 T13: -0.0255 T23: -0.1088 REMARK 3 L TENSOR REMARK 3 L11: 4.7023 L22: 6.4595 REMARK 3 L33: 3.9578 L12: 1.0929 REMARK 3 L13: -2.6074 L23: -1.8080 REMARK 3 S TENSOR REMARK 3 S11: 0.1277 S12: 0.4221 S13: -0.1548 REMARK 3 S21: -0.2431 S22: -0.1816 S23: 0.3048 REMARK 3 S31: -0.0334 S32: -0.2684 S33: 0.1134 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 319:435 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.886 35.530 123.776 REMARK 3 T TENSOR REMARK 3 T11: 0.5097 T22: 0.4749 REMARK 3 T33: 0.3626 T12: 0.0842 REMARK 3 T13: 0.0268 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 3.3665 L22: 3.9452 REMARK 3 L33: 1.9462 L12: -1.2278 REMARK 3 L13: -1.1679 L23: 0.4745 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: -0.0343 S13: 0.1811 REMARK 3 S21: 0.2745 S22: 0.0797 S23: -0.1408 REMARK 3 S31: -0.0635 S32: -0.0094 S33: -0.0302 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 436:470 ) REMARK 3 ORIGIN FOR THE GROUP (A): 70.915 26.716 100.821 REMARK 3 T TENSOR REMARK 3 T11: 0.6617 T22: 0.6303 REMARK 3 T33: 0.5943 T12: 0.1335 REMARK 3 T13: 0.0097 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.9680 L22: 6.7701 REMARK 3 L33: 4.9028 L12: 4.7174 REMARK 3 L13: 3.5288 L23: 5.5534 REMARK 3 S TENSOR REMARK 3 S11: -0.2727 S12: 0.6513 S13: -0.0202 REMARK 3 S21: 0.0676 S22: 0.2937 S23: -0.0672 REMARK 3 S31: 0.4196 S32: 0.9004 S33: -0.0700 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 471:525 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.655 18.371 121.211 REMARK 3 T TENSOR REMARK 3 T11: 0.6173 T22: 0.4709 REMARK 3 T33: 0.5876 T12: 0.1146 REMARK 3 T13: 0.0685 T23: 0.0938 REMARK 3 L TENSOR REMARK 3 L11: 7.3979 L22: 2.7415 REMARK 3 L33: 4.1157 L12: 0.9762 REMARK 3 L13: 0.7097 L23: -0.3998 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.5496 S13: -0.8953 REMARK 3 S21: 0.4302 S22: -0.0248 S23: 0.2695 REMARK 3 S31: 0.5813 S32: -0.3809 S33: 0.0294 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0718 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49235 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 101.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NAOAC PH 5.8, 0.3 M AMSO4, 7% REMARK 280 PEG MME 2000, AND 5 MM SMCL3, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.68100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.37650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.86850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.37650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.68100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.86850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.68100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.86850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 101.37650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.86850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.68100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 101.37650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -347.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 101.73700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 304.12950 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 143 REMARK 465 LEU A 144 REMARK 465 ALA A 145 REMARK 465 GLN A 146 REMARK 465 HIS A 147 REMARK 465 LEU A 148 REMARK 465 SER A 238 REMARK 465 ASP A 239 REMARK 465 LEU A 240 REMARK 465 THR A 241 REMARK 465 LEU A 242 REMARK 465 PRO A 243 REMARK 465 GLY A 244 REMARK 465 MET A 526 REMARK 465 GLU A 527 REMARK 465 GLU A 528 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ASP A 245 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 508 C - N - CD ANGL. DEV. = 13.9 DEGREES REMARK 500 PRO A 508 CA - N - CD ANGL. DEV. = -10.8 DEGREES REMARK 500 PRO A 509 C - N - CD ANGL. DEV. = 13.9 DEGREES REMARK 500 PRO A 509 CA - N - CD ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 11 -121.19 52.84 REMARK 500 ASN A 63 19.47 53.25 REMARK 500 THR A 66 -10.90 76.03 REMARK 500 MET A 212 -10.23 72.00 REMARK 500 PRO A 278 -17.98 -44.05 REMARK 500 PRO A 509 164.23 -48.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A 614 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 431 OD2 REMARK 620 2 GLU A 444 OE1 111.1 REMARK 620 3 GLU A 444 OE2 113.6 2.5 REMARK 620 4 GLU A 480 OE1 72.5 96.2 97.4 REMARK 620 5 GLU A 480 OE2 121.9 78.1 77.3 49.4 REMARK 620 6 HOH A 703 O 84.8 59.6 59.9 138.3 136.5 REMARK 620 7 HOH A 708 O 78.2 36.0 38.4 72.5 83.1 68.7 REMARK 620 8 HOH A 713 O 89.0 155.8 154.0 76.6 79.9 138.8 148.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SM A 614 DBREF 6P74 A 1 528 UNP E8PLM2 E8PLM2_THESS 1 528 SEQRES 1 A 528 MET LEU LYS ARG LEU GLN VAL LYS ASN PHE ARG CYS LEU SEQRES 2 A 528 GLU ASP ILE ASP LEU PRO LEU GLY PRO LEU THR ALA ILE SEQRES 3 A 528 VAL GLY PRO ASN GLY ALA GLY LYS THR THR ILE LEU ARG SEQRES 4 A 528 ALA ILE ASP LEU VAL LEU GLY ASP VAL TRP PRO SER LEU SEQRES 5 A 528 ARG SER PHE ARG ILE PRO GLN ASP PHE ILE ASN PHE ASP SEQRES 6 A 528 THR THR ARG ALA ILE GLU ILE THR VAL HIS PHE ASP PRO SEQRES 7 A 528 PRO TYR THR GLN GLY SER PHE ASN ILE THR ALA PHE ARG SEQRES 8 A 528 LEU THR CYS LYS GLY GLU ASP ALA ASP PHE HIS VAL ASP SEQRES 9 A 528 LEU GLU PRO LEU ASP GLU GLY GLY ASN VAL PRO ARG TYR SEQRES 10 A 528 PRO SER GLY ASN PRO LEU ARG VAL GLY THR ASP MET ARG SEQRES 11 A 528 ASN HIS ALA ARG VAL LEU PHE LEU ASP HIS ARG ARG ASN SEQRES 12 A 528 LEU ALA GLN HIS LEU PRO SER ILE ARG GLY SER ILE LEU SEQRES 13 A 528 GLY ARG LEU LEU GLN PRO VAL ARG ARG GLU PHE LYS LEU SEQRES 14 A 528 GLN ASP ASN PHE LYS GLN VAL TYR GLU GLN ALA MET ASP SEQRES 15 A 528 LEU LEU ARG THR GLU GLN VAL LYS GLN ILE GLU LYS THR SEQRES 16 A 528 ILE ALA GLU THR ALA LYS GLN MET LEU GLY PHE LEU GLY SEQRES 17 A 528 LYS ASP ALA MET LYS SER MET GLU ILE GLY PHE GLY PHE SEQRES 18 A 528 ALA ASP PRO ALA ASN PRO PHE ASN SER LEU ARG LEU GLN SEQRES 19 A 528 TYR ARG GLU SER ASP LEU THR LEU PRO GLY ASP GLU LEU SEQRES 20 A 528 GLY LEU GLY ILE GLN SER ALA ILE VAL VAL GLY ILE PHE SEQRES 21 A 528 GLU ALA PHE ARG GLN LEU GLY GLU LYS ILE GLY THR VAL SEQRES 22 A 528 ILE ILE GLU GLU PRO GLU MET TYR LEU HIS PRO GLN ALA SEQRES 23 A 528 GLN ARG TYR PHE TYR ARG LEU LEU CYS GLU MET ALA ASP SEQRES 24 A 528 LYS ASP GLN CYS GLN ILE ILE TYR SER THR HIS SER PRO SEQRES 25 A 528 ILE PHE ALA ASP VAL ASN ARG PHE GLU ALA LEU ARG LEU SEQRES 26 A 528 VAL ARG LYS ASP ARG ASP ASP ARG VAL VAL VAL SER TYR SEQRES 27 A 528 VAL ARG GLU GLU ASP LYS SER ALA LEU ASP ASN VAL ARG SEQRES 28 A 528 ASN ARG PHE LYS LEU GLY GLY ARG PHE ASP THR ALA ARG SEQRES 29 A 528 ASN GLU VAL LEU PHE ALA LYS ARG ALA LEU LEU VAL GLU SEQRES 30 A 528 GLY TYR GLY ASP ARG VAL ALA ALA LEU GLN LEU PHE ASN SEQRES 31 A 528 GLN LEU GLU VAL ASP PRO ASP ALA GLU CYS ILE ALA VAL SEQRES 32 A 528 VAL ASP CYS GLY GLY LYS ALA GLY ILE GLU LEU ILE VAL SEQRES 33 A 528 GLY VAL CYS LYS ALA LEU ASP ILE PRO PHE VAL VAL VAL SEQRES 34 A 528 HIS ASP GLU ASP VAL TRP PRO ILE ASP GLU ARG ALA ASP SEQRES 35 A 528 GLU GLU THR ARG ARG LYS GLN GLU GLN GLU ASN LYS ALA SEQRES 36 A 528 GLU GLN GLU LYS ASN GLN ARG ILE GLN ALA CYS ALA GLY SEQRES 37 A 528 ALA GLU ARG VAL PHE VAL VAL GLN PRO SER LEU GLU ALA SEQRES 38 A 528 ALA LEU GLY ILE GLY ARG ASN ALA SER ASP LYS PRO TYR SEQRES 39 A 528 ARG ILE ALA GLU ILE LEU LYS THR VAL ASP VAL GLY GLN SEQRES 40 A 528 PRO PRO ASP ALA LEU ARG PRO PHE VAL GLU ALA ILE ARG SEQRES 41 A 528 GLN VAL THR ARG PRO MET GLU GLU HET PT A 601 1 HET PT A 602 1 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET SO4 A 609 5 HET SO4 A 610 5 HET EPE A 611 32 HET EPE A 612 32 HET EPE A 613 32 HET SM A 614 1 HETNAM PT PLATINUM (II) ION HETNAM SO4 SULFATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM SM SAMARIUM (III) ION HETSYN EPE HEPES FORMUL 2 PT 2(PT 2+) FORMUL 4 SO4 8(O4 S 2-) FORMUL 12 EPE 3(C8 H18 N2 O4 S) FORMUL 15 SM SM 3+ FORMUL 16 HOH *66(H2 O) HELIX 1 AA1 GLY A 33 GLY A 46 1 14 HELIX 2 AA2 SER A 51 PHE A 55 5 5 HELIX 3 AA3 PHE A 61 ASP A 65 5 5 HELIX 4 AA4 GLY A 126 ALA A 133 1 8 HELIX 5 AA5 GLY A 153 PHE A 167 1 15 HELIX 6 AA6 LEU A 169 ARG A 185 1 17 HELIX 7 AA7 THR A 186 PHE A 206 1 21 HELIX 8 AA8 ASN A 226 SER A 230 5 5 HELIX 9 AA9 GLU A 246 GLY A 267 1 22 HELIX 10 AB1 HIS A 283 LYS A 300 1 18 HELIX 11 AB2 ARG A 340 LEU A 356 1 17 HELIX 12 AB3 ASP A 361 ALA A 370 5 10 HELIX 13 AB4 GLY A 378 LEU A 392 1 15 HELIX 14 AB5 GLY A 408 ASP A 423 1 16 HELIX 15 AB6 ASP A 442 GLY A 468 1 27 HELIX 16 AB7 SER A 478 GLY A 484 1 7 HELIX 17 AB8 ARG A 487 ASP A 491 5 5 HELIX 18 AB9 LYS A 492 THR A 502 1 11 HELIX 19 AC1 LEU A 512 ARG A 524 1 13 SHEET 1 AA1 5 LEU A 13 PRO A 19 0 SHEET 2 AA1 5 LEU A 2 PHE A 10 -1 N PHE A 10 O LEU A 13 SHEET 3 AA1 5 ILE A 70 GLN A 82 -1 O HIS A 75 N LYS A 3 SHEET 4 AA1 5 PHE A 85 GLU A 97 -1 O LEU A 92 N ILE A 72 SHEET 5 AA1 5 ASP A 100 ASP A 109 -1 O GLU A 106 N ARG A 91 SHEET 1 AA2 6 VAL A 135 LEU A 138 0 SHEET 2 AA2 6 THR A 272 GLU A 276 1 O ILE A 274 N LEU A 138 SHEET 3 AA2 6 GLN A 304 SER A 308 1 O GLN A 304 N VAL A 273 SHEET 4 AA2 6 LEU A 23 VAL A 27 1 N ILE A 26 O TYR A 307 SHEET 5 AA2 6 LEU A 323 LYS A 328 1 O VAL A 326 N VAL A 27 SHEET 6 AA2 6 VAL A 334 SER A 337 -1 O SER A 337 N LEU A 325 SHEET 1 AA3 2 SER A 150 ILE A 151 0 SHEET 2 AA3 2 LEU A 233 GLN A 234 -1 O LEU A 233 N ILE A 151 SHEET 1 AA4 4 ILE A 401 ASP A 405 0 SHEET 2 AA4 4 ARG A 372 VAL A 376 1 N LEU A 374 O VAL A 404 SHEET 3 AA4 4 PHE A 426 ASP A 431 1 O VAL A 427 N LEU A 375 SHEET 4 AA4 4 VAL A 472 VAL A 475 1 O PHE A 473 N VAL A 428 LINK OD2 ASP A 431 SM SM A 614 1555 1555 2.36 LINK OE1 GLU A 444 SM SM A 614 1555 7656 2.43 LINK OE2 GLU A 444 SM SM A 614 1555 7656 2.43 LINK OE1 GLU A 480 SM SM A 614 1555 1555 2.72 LINK OE2 GLU A 480 SM SM A 614 1555 1555 2.61 LINK PT L PT A 601 O HOH A 726 1555 1555 2.73 LINK SM SM A 614 O HOH A 703 1555 1555 2.83 LINK SM SM A 614 O HOH A 708 1555 1555 2.60 LINK SM SM A 614 O HOH A 713 1555 1555 2.61 CISPEP 1 ILE A 57 PRO A 58 0 9.07 CISPEP 2 ASP A 77 PRO A 78 0 2.26 CISPEP 3 ASP A 98 ALA A 99 0 0.71 CISPEP 4 ASP A 210 ALA A 211 0 7.96 CISPEP 5 GLN A 476 PRO A 477 0 -7.27 SITE 1 AC1 2 ARG A 56 HOH A 726 SITE 1 AC2 4 CYS A 12 GLY A 31 THR A 36 SO4 A 603 SITE 1 AC3 8 GLY A 31 ALA A 32 GLY A 33 LYS A 34 SITE 2 AC3 8 THR A 35 THR A 36 GLN A 59 PT A 602 SITE 1 AC4 4 MET A 1 ASP A 77 HIS A 132 ALA A 133 SITE 1 AC5 3 GLY A 126 THR A 127 EPE A 613 SITE 1 AC6 4 VAL A 336 SER A 337 TYR A 338 ALA A 421 SITE 1 AC7 3 PRO A 29 ARG A 327 LYS A 328 SITE 1 AC8 3 GLU A 443 ARG A 446 ASP A 491 SITE 1 AC9 3 HIS A 283 GLN A 285 ARG A 288 SITE 1 AD1 5 TRP A 49 PRO A 50 VAL A 103 ASP A 104 SITE 2 AD1 5 LEU A 105 SITE 1 AD2 5 TRP A 435 GLN A 449 SER A 478 GLU A 480 SITE 2 AD2 5 ARG A 487 SITE 1 AD3 6 PRO A 22 LEU A 23 ASN A 318 GLU A 321 SITE 2 AD3 6 ARG A 351 LYS A 355 SITE 1 AD4 4 VAL A 125 THR A 127 ASP A 245 SO4 A 605 SITE 1 AD5 6 ASP A 431 GLU A 444 GLU A 480 HOH A 703 SITE 2 AD5 6 HOH A 708 HOH A 713 CRYST1 83.362 101.737 202.753 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011996 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004932 0.00000