HEADER TRANSFERASE 05-JUN-19 6P7D TITLE D104N S. TYPHIMURIUM SIROHEME SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIROHEME SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.107,1.3.1.76,4.99.1.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 90371; SOURCE 4 GENE: COBA, CYSG, C2253_19735, CET98_25025, D7F20_23535, SOURCE 5 D7H43_21790, DJ388_17225, NCTC13348_03825; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIROHYDROCHLORIN, PRECORRIN-2, TETRAPYRROLE BIOSYNTHESIS, CYSG, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.PENNINGTON,M.E.STROUPE REVDAT 2 13-MAR-24 6P7D 1 REMARK REVDAT 1 26-FEB-20 6P7D 0 JRNL AUTH J.M.PENNINGTON,M.KEMP,L.MCGARRY,Y.CHEN,M.E.STROUPE JRNL TITL SIROHEME SYNTHASE ORIENTS SUBSTRATES FOR DEHYDROGENASE AND JRNL TITL 2 CHELATASE ACTIVITIES IN A COMMON ACTIVE SITE. JRNL REF NAT COMMUN V. 11 864 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32054833 JRNL DOI 10.1038/S41467-020-14722-1 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.570 REMARK 3 FREE R VALUE TEST SET COUNT : 1614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2800 - 5.4900 1.00 2985 144 0.1697 0.2325 REMARK 3 2 5.4900 - 4.3600 1.00 2865 136 0.1527 0.2028 REMARK 3 3 4.3600 - 3.8100 1.00 2833 136 0.1444 0.2255 REMARK 3 4 3.8100 - 3.4600 1.00 2803 135 0.1736 0.2801 REMARK 3 5 3.4600 - 3.2100 1.00 2799 133 0.1897 0.2602 REMARK 3 6 3.2100 - 3.0200 1.00 2769 133 0.1990 0.2801 REMARK 3 7 3.0200 - 2.8700 1.00 2802 135 0.2237 0.2879 REMARK 3 8 2.8700 - 2.7500 1.00 2762 133 0.2194 0.2945 REMARK 3 9 2.7500 - 2.6400 1.00 2756 132 0.2233 0.3083 REMARK 3 10 2.6400 - 2.5500 1.00 2788 133 0.2208 0.2796 REMARK 3 11 2.5500 - 2.4700 1.00 2737 132 0.2462 0.2922 REMARK 3 12 2.4700 - 2.4000 1.00 2771 132 0.2761 0.3582 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.339 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.669 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7187 REMARK 3 ANGLE : 1.054 9751 REMARK 3 CHIRALITY : 0.058 1118 REMARK 3 PLANARITY : 0.006 1282 REMARK 3 DIHEDRAL : 5.173 5964 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7060 -20.7963 47.7701 REMARK 3 T TENSOR REMARK 3 T11: 0.3340 T22: 0.3550 REMARK 3 T33: 0.3432 T12: 0.0263 REMARK 3 T13: -0.0524 T23: -0.0549 REMARK 3 L TENSOR REMARK 3 L11: 7.2558 L22: 6.2307 REMARK 3 L33: 3.3570 L12: 3.0768 REMARK 3 L13: -1.4996 L23: -1.6680 REMARK 3 S TENSOR REMARK 3 S11: -0.0531 S12: -0.2982 S13: -0.3026 REMARK 3 S21: 0.1285 S22: 0.0970 S23: -0.1926 REMARK 3 S31: 0.3544 S32: -0.0124 S33: -0.0457 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4692 -16.4389 46.4177 REMARK 3 T TENSOR REMARK 3 T11: 0.2953 T22: 0.4054 REMARK 3 T33: 0.3537 T12: 0.0916 REMARK 3 T13: 0.0667 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 8.3097 L22: 3.3780 REMARK 3 L33: 8.5226 L12: 4.5315 REMARK 3 L13: 5.9463 L23: 3.0274 REMARK 3 S TENSOR REMARK 3 S11: 0.1579 S12: -0.8276 S13: 0.0120 REMARK 3 S21: -0.1000 S22: -0.2918 S23: -0.0826 REMARK 3 S31: 0.0342 S32: -0.7615 S33: 0.1019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0335 -19.7101 57.2230 REMARK 3 T TENSOR REMARK 3 T11: 0.4397 T22: 0.5660 REMARK 3 T33: 0.4887 T12: -0.0242 REMARK 3 T13: 0.0129 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 6.5365 L22: 3.2222 REMARK 3 L33: 2.8711 L12: 3.3726 REMARK 3 L13: 1.6801 L23: -1.0041 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.4989 S13: -0.9895 REMARK 3 S21: -0.1176 S22: 0.0682 S23: -0.2273 REMARK 3 S31: 0.4346 S32: 0.4118 S33: 0.0662 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6057 -2.6730 34.2248 REMARK 3 T TENSOR REMARK 3 T11: 0.6353 T22: 0.4305 REMARK 3 T33: 0.4708 T12: 0.0165 REMARK 3 T13: 0.1117 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.5582 L22: 0.7082 REMARK 3 L33: 2.9877 L12: -0.5044 REMARK 3 L13: 0.5477 L23: -1.4660 REMARK 3 S TENSOR REMARK 3 S11: -0.1989 S12: -0.2263 S13: 0.2531 REMARK 3 S21: 0.3219 S22: -0.1072 S23: 0.0863 REMARK 3 S31: -0.1663 S32: -0.6430 S33: 0.3295 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1736 6.8319 28.2407 REMARK 3 T TENSOR REMARK 3 T11: 0.8558 T22: 0.4167 REMARK 3 T33: 0.5780 T12: 0.0625 REMARK 3 T13: 0.0310 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 5.3164 L22: 6.6371 REMARK 3 L33: 6.4976 L12: -0.8330 REMARK 3 L13: 0.7631 L23: 1.9191 REMARK 3 S TENSOR REMARK 3 S11: -0.1514 S12: 0.0029 S13: 0.5510 REMARK 3 S21: 0.2447 S22: -0.1498 S23: 0.5439 REMARK 3 S31: -1.0384 S32: 0.1135 S33: 0.2300 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7034 -7.5350 13.0477 REMARK 3 T TENSOR REMARK 3 T11: 0.3314 T22: 0.2889 REMARK 3 T33: 0.3679 T12: 0.0096 REMARK 3 T13: 0.0153 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 5.0147 L22: 7.1407 REMARK 3 L33: 2.5470 L12: 2.3634 REMARK 3 L13: 2.6588 L23: 0.2442 REMARK 3 S TENSOR REMARK 3 S11: 0.0993 S12: 0.3346 S13: 0.1660 REMARK 3 S21: -0.0073 S22: -0.1064 S23: -0.1112 REMARK 3 S31: 0.9494 S32: -0.1725 S33: -0.1309 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 352 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6555 1.9974 0.1847 REMARK 3 T TENSOR REMARK 3 T11: 0.3890 T22: 0.4155 REMARK 3 T33: 0.3675 T12: 0.0678 REMARK 3 T13: -0.0420 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 6.8125 L22: 5.8661 REMARK 3 L33: 7.5857 L12: 2.3085 REMARK 3 L13: -0.4913 L23: -3.7863 REMARK 3 S TENSOR REMARK 3 S11: 0.2133 S12: 0.3277 S13: 0.4012 REMARK 3 S21: -0.0972 S22: -0.1414 S23: 0.1454 REMARK 3 S31: -0.3399 S32: 0.1397 S33: -0.1229 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 417 THROUGH 457 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0484 -5.2963 0.1184 REMARK 3 T TENSOR REMARK 3 T11: 0.4489 T22: 0.6773 REMARK 3 T33: 0.5467 T12: -0.1622 REMARK 3 T13: -0.0766 T23: 0.0882 REMARK 3 L TENSOR REMARK 3 L11: 4.3605 L22: 2.5973 REMARK 3 L33: 6.7843 L12: -0.5409 REMARK 3 L13: 0.0137 L23: -0.8017 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: 0.2998 S13: -0.2993 REMARK 3 S21: -0.8157 S22: 0.2469 S23: 0.7931 REMARK 3 S31: 0.4695 S32: -1.2288 S33: -0.2866 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2890 -2.9588 41.5332 REMARK 3 T TENSOR REMARK 3 T11: 0.3597 T22: 0.4657 REMARK 3 T33: 0.4322 T12: -0.0694 REMARK 3 T13: -0.0087 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.6154 L22: 3.3874 REMARK 3 L33: 2.7666 L12: -0.4578 REMARK 3 L13: -1.0160 L23: 1.5500 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.0104 S13: 0.3405 REMARK 3 S21: -0.1644 S22: 0.0807 S23: 0.1266 REMARK 3 S31: -0.3326 S32: 0.2317 S33: -0.0965 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6804 -16.6757 15.5218 REMARK 3 T TENSOR REMARK 3 T11: 0.5028 T22: 0.3833 REMARK 3 T33: 0.3522 T12: 0.0697 REMARK 3 T13: -0.0284 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 5.1089 L22: 2.9392 REMARK 3 L33: 2.7760 L12: 1.6678 REMARK 3 L13: -0.3717 L23: -1.3254 REMARK 3 S TENSOR REMARK 3 S11: -0.0862 S12: 0.0856 S13: -0.0903 REMARK 3 S21: -0.2291 S22: -0.1737 S23: -0.3063 REMARK 3 S31: 0.2801 S32: 0.2613 S33: 0.2324 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44327 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.7 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.23300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 9.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : 2.05600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4-14% PEG 4000, 100 MM 2-(N REMARK 280 -MORPHOLINO)ETHANESULFONIC ACID (MES) PH 5.0, 500MM SODIUM REMARK 280 CHLORIDE, 7 MM 2-MERCAPTOETHANOL (BME), MICROSEEDED, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.04800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.71050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.66450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.71050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.04800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.66450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 271 REMARK 465 ALA A 272 REMARK 465 GLY A 273 REMARK 465 TYR A 274 REMARK 465 HIS A 275 REMARK 465 CYS A 276 REMARK 465 LEU A 360 REMARK 465 LYS A 361 REMARK 465 THR A 362 REMARK 465 GLY A 363 REMARK 465 GLY B 273 REMARK 465 TYR B 274 REMARK 465 HIS B 275 REMARK 465 CYS B 276 REMARK 465 HIS B 359 REMARK 465 LEU B 360 REMARK 465 LYS B 361 REMARK 465 THR B 362 REMARK 465 ASN B 456 REMARK 465 HIS B 457 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 415 O HOH B 601 1.97 REMARK 500 NZ LYS B 300 O GLY B 308 2.15 REMARK 500 OE2 GLU A 428 O HOH A 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 104 32.34 -89.25 REMARK 500 ALA A 105 70.71 -165.32 REMARK 500 ARG A 347 -66.46 -19.54 REMARK 500 GLU A 365 -159.52 -112.82 REMARK 500 LYS A 375 34.95 71.27 REMARK 500 THR A 412 -8.49 78.72 REMARK 500 ASN A 456 78.98 -103.07 REMARK 500 SER B 132 72.87 -160.47 REMARK 500 ARG B 215 51.43 -149.43 REMARK 500 ARG B 271 -65.27 -133.60 REMARK 500 HIS B 346 126.45 -179.84 REMARK 500 ARG B 347 -124.97 42.61 REMARK 500 THR B 357 -164.85 -103.70 REMARK 500 GLN B 386 33.29 -83.39 REMARK 500 ALA B 396 2.32 -68.07 REMARK 500 THR B 412 -3.61 71.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 260 ARG B 261 -145.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 668 DISTANCE = 7.39 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PJS RELATED DB: PDB DBREF1 6P7D A 1 457 UNP A0A3V0JC15_SALTM DBREF2 6P7D A A0A3V0JC15 1 457 DBREF1 6P7D B 1 457 UNP A0A3V0JC15_SALTM DBREF2 6P7D B A0A3V0JC15 1 457 SEQADV 6P7D ASN A 104 UNP A0A3V0JC1 ASP 104 ENGINEERED MUTATION SEQADV 6P7D ALA A 128 UNP A0A3V0JC1 SER 128 ENGINEERED MUTATION SEQADV 6P7D ASN B 104 UNP A0A3V0JC1 ASP 104 ENGINEERED MUTATION SEQADV 6P7D ALA B 128 UNP A0A3V0JC1 SER 128 ENGINEERED MUTATION SEQRES 1 A 457 MET ASP HIS LEU PRO ILE PHE CYS GLN LEU ARG ASP ARG SEQRES 2 A 457 ASP CYS LEU ILE VAL GLY GLY GLY ASP VAL ALA GLU ARG SEQRES 3 A 457 LYS ALA ARG LEU LEU LEU GLU ALA GLY ALA ARG LEU THR SEQRES 4 A 457 VAL ASN ALA LEU THR PHE ILE PRO GLN PHE THR VAL TRP SEQRES 5 A 457 ALA ASN GLU GLY MET LEU THR LEU VAL GLU GLY PRO PHE SEQRES 6 A 457 ASP GLU THR LEU LEU ASP SER CYS TRP LEU ALA ILE ALA SEQRES 7 A 457 ALA THR ASP ASP ASP THR VAL ASN GLN ARG VAL SER ASP SEQRES 8 A 457 ALA ALA GLU SER ARG ARG ILE PHE CYS ASN VAL VAL ASN SEQRES 9 A 457 ALA PRO LYS ALA ALA SER PHE ILE MET PRO SER ILE ILE SEQRES 10 A 457 ASP ARG SER PRO LEU MET VAL ALA VAL SER ALA GLY GLY SEQRES 11 A 457 THR SER PRO VAL LEU ALA ARG LEU LEU ARG GLU LYS LEU SEQRES 12 A 457 GLU SER LEU LEU PRO GLN HIS LEU GLY GLN VAL ALA ARG SEQRES 13 A 457 TYR ALA GLY GLN LEU ARG ALA ARG VAL LYS LYS GLN PHE SEQRES 14 A 457 ALA THR MET GLY GLU ARG ARG ARG PHE TRP GLU LYS PHE SEQRES 15 A 457 PHE VAL ASN ASP ARG LEU ALA GLN SER LEU ALA ASN ALA SEQRES 16 A 457 ASP GLU LYS ALA VAL ASN ALA THR THR GLU ARG LEU PHE SEQRES 17 A 457 SER GLU PRO LEU ASP HIS ARG GLY GLU VAL VAL LEU VAL SEQRES 18 A 457 GLY ALA GLY PRO GLY ASP ALA GLY LEU LEU THR LEU LYS SEQRES 19 A 457 GLY LEU GLN GLN ILE GLN GLN ALA ASP ILE VAL VAL TYR SEQRES 20 A 457 ASP ARG LEU VAL SER ASP ASP ILE MET ASN LEU VAL ARG SEQRES 21 A 457 ARG ASP ALA ASP ARG VAL PHE VAL GLY LYS ARG ALA GLY SEQRES 22 A 457 TYR HIS CYS VAL PRO GLN GLU GLU ILE ASN GLN ILE LEU SEQRES 23 A 457 LEU ARG GLU ALA GLN LYS GLY LYS ARG VAL VAL ARG LEU SEQRES 24 A 457 LYS GLY GLY ASP PRO PHE ILE PHE GLY ARG GLY GLY GLU SEQRES 25 A 457 GLU LEU GLU THR LEU CYS HIS ALA GLY ILE PRO PHE SER SEQRES 26 A 457 VAL VAL PRO GLY ILE THR ALA ALA SER GLY CYS SER ALA SEQRES 27 A 457 TYR SER GLY ILE PRO LEU THR HIS ARG ASP TYR ALA GLN SEQRES 28 A 457 SER VAL ARG LEU VAL THR GLY HIS LEU LYS THR GLY GLY SEQRES 29 A 457 GLU LEU ASP TRP GLU ASN LEU ALA ALA GLU LYS GLN THR SEQRES 30 A 457 LEU VAL PHE TYR MET GLY LEU ASN GLN ALA ALA THR ILE SEQRES 31 A 457 GLN GLU LYS LEU ILE ALA PHE GLY MET GLN ALA ASP MET SEQRES 32 A 457 PRO VAL ALA LEU VAL GLU ASN GLY THR SER VAL LYS GLN SEQRES 33 A 457 ARG VAL VAL HIS GLY VAL LEU THR GLN LEU GLY GLU LEU SEQRES 34 A 457 ALA GLN GLN VAL GLU SER PRO ALA LEU ILE ILE VAL GLY SEQRES 35 A 457 ARG VAL VAL ALA LEU ARG ASP LYS LEU ASN TRP PHE SER SEQRES 36 A 457 ASN HIS SEQRES 1 B 457 MET ASP HIS LEU PRO ILE PHE CYS GLN LEU ARG ASP ARG SEQRES 2 B 457 ASP CYS LEU ILE VAL GLY GLY GLY ASP VAL ALA GLU ARG SEQRES 3 B 457 LYS ALA ARG LEU LEU LEU GLU ALA GLY ALA ARG LEU THR SEQRES 4 B 457 VAL ASN ALA LEU THR PHE ILE PRO GLN PHE THR VAL TRP SEQRES 5 B 457 ALA ASN GLU GLY MET LEU THR LEU VAL GLU GLY PRO PHE SEQRES 6 B 457 ASP GLU THR LEU LEU ASP SER CYS TRP LEU ALA ILE ALA SEQRES 7 B 457 ALA THR ASP ASP ASP THR VAL ASN GLN ARG VAL SER ASP SEQRES 8 B 457 ALA ALA GLU SER ARG ARG ILE PHE CYS ASN VAL VAL ASN SEQRES 9 B 457 ALA PRO LYS ALA ALA SER PHE ILE MET PRO SER ILE ILE SEQRES 10 B 457 ASP ARG SER PRO LEU MET VAL ALA VAL SER ALA GLY GLY SEQRES 11 B 457 THR SER PRO VAL LEU ALA ARG LEU LEU ARG GLU LYS LEU SEQRES 12 B 457 GLU SER LEU LEU PRO GLN HIS LEU GLY GLN VAL ALA ARG SEQRES 13 B 457 TYR ALA GLY GLN LEU ARG ALA ARG VAL LYS LYS GLN PHE SEQRES 14 B 457 ALA THR MET GLY GLU ARG ARG ARG PHE TRP GLU LYS PHE SEQRES 15 B 457 PHE VAL ASN ASP ARG LEU ALA GLN SER LEU ALA ASN ALA SEQRES 16 B 457 ASP GLU LYS ALA VAL ASN ALA THR THR GLU ARG LEU PHE SEQRES 17 B 457 SER GLU PRO LEU ASP HIS ARG GLY GLU VAL VAL LEU VAL SEQRES 18 B 457 GLY ALA GLY PRO GLY ASP ALA GLY LEU LEU THR LEU LYS SEQRES 19 B 457 GLY LEU GLN GLN ILE GLN GLN ALA ASP ILE VAL VAL TYR SEQRES 20 B 457 ASP ARG LEU VAL SER ASP ASP ILE MET ASN LEU VAL ARG SEQRES 21 B 457 ARG ASP ALA ASP ARG VAL PHE VAL GLY LYS ARG ALA GLY SEQRES 22 B 457 TYR HIS CYS VAL PRO GLN GLU GLU ILE ASN GLN ILE LEU SEQRES 23 B 457 LEU ARG GLU ALA GLN LYS GLY LYS ARG VAL VAL ARG LEU SEQRES 24 B 457 LYS GLY GLY ASP PRO PHE ILE PHE GLY ARG GLY GLY GLU SEQRES 25 B 457 GLU LEU GLU THR LEU CYS HIS ALA GLY ILE PRO PHE SER SEQRES 26 B 457 VAL VAL PRO GLY ILE THR ALA ALA SER GLY CYS SER ALA SEQRES 27 B 457 TYR SER GLY ILE PRO LEU THR HIS ARG ASP TYR ALA GLN SEQRES 28 B 457 SER VAL ARG LEU VAL THR GLY HIS LEU LYS THR GLY GLY SEQRES 29 B 457 GLU LEU ASP TRP GLU ASN LEU ALA ALA GLU LYS GLN THR SEQRES 30 B 457 LEU VAL PHE TYR MET GLY LEU ASN GLN ALA ALA THR ILE SEQRES 31 B 457 GLN GLU LYS LEU ILE ALA PHE GLY MET GLN ALA ASP MET SEQRES 32 B 457 PRO VAL ALA LEU VAL GLU ASN GLY THR SER VAL LYS GLN SEQRES 33 B 457 ARG VAL VAL HIS GLY VAL LEU THR GLN LEU GLY GLU LEU SEQRES 34 B 457 ALA GLN GLN VAL GLU SER PRO ALA LEU ILE ILE VAL GLY SEQRES 35 B 457 ARG VAL VAL ALA LEU ARG ASP LYS LEU ASN TRP PHE SER SEQRES 36 B 457 ASN HIS HET SAH A 501 26 HET SAH B 501 26 HET CL B 502 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM CL CHLORIDE ION FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 CL CL 1- FORMUL 6 HOH *111(H2 O) HELIX 1 AA1 GLY A 21 ALA A 34 1 14 HELIX 2 AA2 ILE A 46 GLU A 55 1 10 HELIX 3 AA3 ASP A 66 ASP A 71 5 6 HELIX 4 AA4 ASP A 82 SER A 95 1 14 HELIX 5 AA5 ALA A 105 ALA A 109 5 5 HELIX 6 AA6 SER A 132 SER A 145 1 14 HELIX 7 AA7 HIS A 150 PHE A 169 1 20 HELIX 8 AA8 THR A 171 PHE A 183 1 13 HELIX 9 AA9 ASN A 185 ASN A 194 1 10 HELIX 10 AB1 ASP A 196 GLU A 210 1 15 HELIX 11 AB2 ASP A 227 LEU A 231 5 5 HELIX 12 AB3 THR A 232 ALA A 242 1 11 HELIX 13 AB4 SER A 252 ASN A 257 1 6 HELIX 14 AB5 PRO A 278 GLN A 291 1 14 HELIX 15 AB6 GLU A 312 HIS A 319 1 8 HELIX 16 AB7 THR A 331 SER A 340 1 10 HELIX 17 AB8 ASP A 367 ALA A 372 1 6 HELIX 18 AB9 GLN A 386 PHE A 397 1 12 HELIX 19 AC1 GLN A 425 GLN A 431 1 7 HELIX 20 AC2 ARG A 443 ALA A 446 5 4 HELIX 21 AC3 LEU A 447 ASN A 452 1 6 HELIX 22 AC4 GLY B 21 ALA B 34 1 14 HELIX 23 AC5 ILE B 46 GLU B 55 1 10 HELIX 24 AC6 ASP B 66 CYS B 73 5 8 HELIX 25 AC7 ASP B 82 ARG B 96 1 15 HELIX 26 AC8 SER B 132 LEU B 147 1 16 HELIX 27 AC9 HIS B 150 GLN B 160 1 11 HELIX 28 AD1 LEU B 161 LYS B 167 1 7 HELIX 29 AD2 THR B 171 PHE B 183 1 13 HELIX 30 AD3 ASN B 185 ALA B 195 1 11 HELIX 31 AD4 ASP B 196 GLU B 210 1 15 HELIX 32 AD5 ASP B 227 LEU B 231 5 5 HELIX 33 AD6 THR B 232 GLN B 241 1 10 HELIX 34 AD7 SER B 252 LEU B 258 1 7 HELIX 35 AD8 PRO B 278 LYS B 292 1 15 HELIX 36 AD9 GLY B 310 HIS B 319 1 10 HELIX 37 AE1 THR B 331 GLY B 341 1 11 HELIX 38 AE2 ASP B 367 ALA B 372 1 6 HELIX 39 AE3 LEU B 384 GLN B 386 5 3 HELIX 40 AE4 ALA B 387 ALA B 396 1 10 HELIX 41 AE5 GLN B 425 GLN B 431 1 7 HELIX 42 AE6 ARG B 443 ALA B 446 5 4 HELIX 43 AE7 LEU B 447 ASN B 452 1 6 SHEET 1 AA1 4 PHE A 111 ILE A 112 0 SHEET 2 AA1 4 LEU B 4 CYS B 8 -1 O PHE B 7 N ILE A 112 SHEET 3 AA1 4 LEU A 4 CYS A 8 -1 N LEU A 4 O CYS B 8 SHEET 4 AA1 4 PHE B 111 ILE B 112 -1 O ILE B 112 N PHE A 7 SHEET 1 AA2 5 LEU A 58 GLU A 62 0 SHEET 2 AA2 5 ARG A 37 ALA A 42 1 N VAL A 40 O THR A 59 SHEET 3 AA2 5 ASP A 14 VAL A 18 1 N ILE A 17 O THR A 39 SHEET 4 AA2 5 LEU A 75 ALA A 78 1 O ILE A 77 N VAL A 18 SHEET 5 AA2 5 PHE A 99 VAL A 102 1 O ASN A 101 N ALA A 78 SHEET 1 AA3 4 SER A 115 ARG A 119 0 SHEET 2 AA3 4 LEU A 122 SER A 127 -1 O VAL A 124 N ILE A 117 SHEET 3 AA3 4 LEU B 122 SER B 127 -1 O MET B 123 N SER A 127 SHEET 4 AA3 4 SER B 115 ARG B 119 -1 N ILE B 117 O VAL B 124 SHEET 1 AA4 5 ASP A 264 VAL A 268 0 SHEET 2 AA4 5 ILE A 244 ASP A 248 1 N VAL A 245 O ASP A 264 SHEET 3 AA4 5 ARG A 295 LYS A 300 1 O LEU A 299 N VAL A 246 SHEET 4 AA4 5 GLU A 217 GLY A 222 1 N VAL A 219 O ARG A 298 SHEET 5 AA4 5 PHE A 324 VAL A 327 1 O VAL A 327 N LEU A 220 SHEET 1 AA510 ARG A 417 VAL A 422 0 SHEET 2 AA510 PRO A 404 GLU A 409 -1 N LEU A 407 O VAL A 419 SHEET 3 AA510 ALA A 437 VAL A 441 -1 O ILE A 440 N ALA A 406 SHEET 4 AA510 THR A 377 TYR A 381 -1 N LEU A 378 O VAL A 441 SHEET 5 AA510 SER A 352 VAL A 356 1 N VAL A 356 O VAL A 379 SHEET 6 AA510 SER B 352 VAL B 356 -1 O LEU B 355 N VAL A 353 SHEET 7 AA510 GLN B 376 PHE B 380 1 O THR B 377 N ARG B 354 SHEET 8 AA510 ALA B 437 VAL B 441 -1 O ILE B 439 N PHE B 380 SHEET 9 AA510 PRO B 404 GLU B 409 -1 N ALA B 406 O ILE B 440 SHEET 10 AA510 ARG B 417 VAL B 422 -1 O ARG B 417 N GLU B 409 SHEET 1 AA6 5 THR B 59 GLU B 62 0 SHEET 2 AA6 5 ARG B 37 ALA B 42 1 N VAL B 40 O THR B 59 SHEET 3 AA6 5 ASP B 14 VAL B 18 1 N ILE B 17 O ASN B 41 SHEET 4 AA6 5 LEU B 75 ALA B 78 1 O ILE B 77 N VAL B 18 SHEET 5 AA6 5 PHE B 99 VAL B 102 1 O ASN B 101 N ALA B 78 SHEET 1 AA7 5 ASP B 264 PHE B 267 0 SHEET 2 AA7 5 ILE B 244 TYR B 247 1 N VAL B 245 O ASP B 264 SHEET 3 AA7 5 ARG B 295 LYS B 300 1 O VAL B 297 N VAL B 246 SHEET 4 AA7 5 GLU B 217 GLY B 222 1 N VAL B 221 O ARG B 298 SHEET 5 AA7 5 PHE B 324 VAL B 327 1 O VAL B 327 N LEU B 220 CISPEP 1 SER A 120 PRO A 121 0 5.76 CISPEP 2 SER A 435 PRO A 436 0 -2.50 CISPEP 3 SER B 120 PRO B 121 0 6.27 CISPEP 4 SER B 435 PRO B 436 0 0.14 SITE 1 AC1 17 PRO A 225 LEU A 250 GLY A 301 GLY A 302 SITE 2 AC1 17 ASP A 303 ILE A 306 PHE A 307 THR A 331 SITE 3 AC1 17 ALA A 332 CYS A 336 TYR A 381 MET A 382 SITE 4 AC1 17 VAL A 408 ASN A 410 GLY A 411 ALA A 437 SITE 5 AC1 17 LEU A 438 SITE 1 AC2 17 PRO B 225 GLY B 301 GLY B 302 ASP B 303 SITE 2 AC2 17 ILE B 306 PHE B 307 THR B 331 ALA B 332 SITE 3 AC2 17 TYR B 381 MET B 382 VAL B 408 ASN B 410 SITE 4 AC2 17 GLY B 411 PRO B 436 ALA B 437 LEU B 438 SITE 5 AC2 17 HOH B 621 SITE 1 AC3 4 ALA B 128 GLY B 130 SER B 132 PRO B 133 CRYST1 60.096 99.329 147.421 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016640 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010068 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006783 0.00000