HEADER OXIDOREDUCTASE 05-JUN-19 6P7K TITLE STRUCTURE OF HMG-COA REDUCTASE FROM BURKHOLDERIA CENOCEPACIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HMG-COA REDUCTASE; COMPND 5 EC: 1.1.1.88; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CENOCEPACIA; SOURCE 3 ORGANISM_TAXID: 95486; SOURCE 4 GENE: MVAA, NCTC13227_01540; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HMG-COA, MEVALONATE, MORPHEEIN, REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.WALKER,R.B.PEACOCK,C.W.HICKS,S.M.DEWING,K.M.LEWIS,J.ABBOUD, AUTHOR 2 S.W.A.STEWART,C.KANG,J.M.WATSON REVDAT 2 11-OCT-23 6P7K 1 REMARK REVDAT 1 08-APR-20 6P7K 0 JRNL AUTH R.B.PEACOCK,C.W.HICKS,A.M.WALKER,S.M.DEWING,K.M.LEWIS, JRNL AUTH 2 J.C.ABBOUD,S.W.A.STEWART,C.KANG,J.M.WATSON JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF DYNAMIC JRNL TITL 2 OLIGOMERIZATION IN BURKHOLDERIA CENOCEPACIA HMG-COA JRNL TITL 3 REDUCTASE. JRNL REF BIOCHEMISTRY V. 58 3960 2019 JRNL REFN ISSN 0006-2960 JRNL PMID 31469273 JRNL DOI 10.1021/ACS.BIOCHEM.9B00494 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 69908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.590 REMARK 3 FREE R VALUE TEST SET COUNT : 1811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3120 - 4.0490 1.00 6128 164 0.1412 0.1416 REMARK 3 2 4.0490 - 3.2141 0.99 5827 157 0.1354 0.1558 REMARK 3 3 3.2141 - 2.8078 0.99 5756 155 0.1382 0.1702 REMARK 3 4 2.8078 - 2.5511 0.99 5689 152 0.1361 0.1605 REMARK 3 5 2.5511 - 2.3683 0.98 5602 148 0.1300 0.1666 REMARK 3 6 2.3683 - 2.2287 0.96 5461 147 0.1570 0.1968 REMARK 3 7 2.2287 - 2.1171 0.94 5363 144 0.1376 0.1619 REMARK 3 8 2.1171 - 2.0249 0.94 5326 143 0.1390 0.1500 REMARK 3 9 2.0249 - 1.9469 0.89 5056 139 0.1587 0.2049 REMARK 3 10 1.9469 - 1.8798 0.91 5193 138 0.2088 0.2415 REMARK 3 11 1.8798 - 1.8210 0.77 4390 125 0.2211 0.2361 REMARK 3 12 1.8210 - 1.7689 0.77 4369 103 0.2582 0.2466 REMARK 3 13 1.7689 - 1.7224 0.69 3937 96 0.3188 0.2964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.8707 48.0146 13.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.3176 REMARK 3 T33: 0.2442 T12: -0.1066 REMARK 3 T13: -0.0356 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.1783 L22: 0.0831 REMARK 3 L33: 0.1071 L12: -0.0506 REMARK 3 L13: -0.1045 L23: -0.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: 0.1001 S13: -0.0897 REMARK 3 S21: 0.0243 S22: -0.0052 S23: 0.0690 REMARK 3 S31: 0.1943 S32: -0.2720 S33: 0.0058 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2129 56.0054 29.0105 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: 0.2083 REMARK 3 T33: 0.1871 T12: -0.0316 REMARK 3 T13: -0.0048 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.4363 L22: 0.1886 REMARK 3 L33: 0.2478 L12: 0.1982 REMARK 3 L13: -0.0808 L23: 0.1205 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: -0.0413 S13: -0.0643 REMARK 3 S21: 0.0081 S22: -0.0007 S23: 0.0055 REMARK 3 S31: 0.1165 S32: -0.0724 S33: 0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1878 47.9987 39.7544 REMARK 3 T TENSOR REMARK 3 T11: 0.3003 T22: 0.2672 REMARK 3 T33: 0.3266 T12: -0.0061 REMARK 3 T13: -0.0669 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.0651 L22: 0.0131 REMARK 3 L33: 0.0692 L12: -0.0167 REMARK 3 L13: 0.0680 L23: -0.0176 REMARK 3 S TENSOR REMARK 3 S11: 0.1780 S12: -0.0159 S13: -0.2059 REMARK 3 S21: 0.0619 S22: -0.0560 S23: -0.0469 REMARK 3 S31: 0.1711 S32: 0.0151 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9188 60.3326 32.7241 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.2483 REMARK 3 T33: 0.1961 T12: -0.0416 REMARK 3 T13: -0.0038 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.5155 L22: 0.2437 REMARK 3 L33: 0.1784 L12: 0.1343 REMARK 3 L13: 0.0977 L23: 0.1996 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: -0.1082 S13: -0.0436 REMARK 3 S21: 0.0235 S22: 0.0074 S23: 0.0042 REMARK 3 S31: 0.0774 S32: 0.0208 S33: -0.0015 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0417 63.1869 20.8867 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.1953 REMARK 3 T33: 0.1763 T12: -0.0512 REMARK 3 T13: -0.0099 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.6061 L22: 0.1462 REMARK 3 L33: 0.7333 L12: -0.0283 REMARK 3 L13: -0.0781 L23: 0.1019 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.0129 S13: -0.0345 REMARK 3 S21: 0.0105 S22: 0.0010 S23: -0.0097 REMARK 3 S31: 0.0076 S32: 0.0381 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P7K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76515 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.12800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM ACETATE, PH 7.5, 20 G REMARK 280 DL-1 PEG 3,350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.48350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.48350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.48350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.48350 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.48350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 61.48350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 85640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 70.74250 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 122.52960 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -70.74250 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 122.52960 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 70.74250 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 122.52960 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 61.48350 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 61.48350 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -70.74250 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 122.52960 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 61.48350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 724 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1018 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 PRO A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 HIS A 21 REMARK 465 GLY A 397 REMARK 465 ILE A 398 REMARK 465 GLN A 399 REMARK 465 ARG A 400 REMARK 465 GLY A 401 REMARK 465 HIS A 402 REMARK 465 MET A 403 REMARK 465 ALA A 404 REMARK 465 LEU A 405 REMARK 465 HIS A 406 REMARK 465 ALA A 407 REMARK 465 ARG A 408 REMARK 465 ASN A 409 REMARK 465 ILE A 410 REMARK 465 ALA A 411 REMARK 465 VAL A 412 REMARK 465 ALA A 413 REMARK 465 ALA A 414 REMARK 465 GLY A 415 REMARK 465 ALA A 416 REMARK 465 THR A 417 REMARK 465 GLY A 418 REMARK 465 ALA A 419 REMARK 465 ASP A 420 REMARK 465 ILE A 421 REMARK 465 ASP A 422 REMARK 465 ARG A 423 REMARK 465 ILE A 424 REMARK 465 ALA A 425 REMARK 465 GLN A 426 REMARK 465 ARG A 427 REMARK 465 MET A 428 REMARK 465 VAL A 429 REMARK 465 ALA A 430 REMARK 465 ALA A 431 REMARK 465 LYS A 432 REMARK 465 ASP A 433 REMARK 465 VAL A 434 REMARK 465 ARG A 435 REMARK 465 THR A 436 REMARK 465 ASP A 437 REMARK 465 PHE A 438 REMARK 465 ALA A 439 REMARK 465 VAL A 440 REMARK 465 GLU A 441 REMARK 465 LEU A 442 REMARK 465 LEU A 443 REMARK 465 ALA A 444 REMARK 465 GLY A 445 REMARK 465 ARG A 446 REMARK 465 SER A 447 REMARK 465 ASP A 448 REMARK 465 GLY A 449 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 22 CG SD CE REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 916 O HOH A 984 1.85 REMARK 500 O HOH A 902 O HOH A 967 1.86 REMARK 500 O HOH A 871 O HOH A 930 1.92 REMARK 500 OD2 ASP A 167 O HOH A 601 1.92 REMARK 500 O HOH A 954 O HOH A 1007 2.01 REMARK 500 O HOH A 661 O HOH A 916 2.02 REMARK 500 O HOH A 641 O HOH A 812 2.03 REMARK 500 OE1 GLN A 229 O HOH A 602 2.06 REMARK 500 O HOH A 674 O HOH A 909 2.07 REMARK 500 O HOH A 985 O HOH A 1011 2.16 REMARK 500 O HOH A 619 O HOH A 773 2.16 REMARK 500 O HOH A 776 O HOH A 960 2.17 REMARK 500 OE2 GLU A 263 O HOH A 603 2.18 REMARK 500 O HOH A 602 O HOH A 938 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 605 O HOH A 605 12565 1.57 REMARK 500 O HOH A 1000 O HOH A 1005 12565 1.83 REMARK 500 O HOH A 789 O HOH A 789 12565 1.96 REMARK 500 O HOH A 618 O HOH A 949 11555 2.04 REMARK 500 O HOH A 762 O HOH A 937 12565 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 83 CG - SD - CE ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 249 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 249 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 318 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 321 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 MET A 342 CG - SD - CE ANGL. DEV. = -11.9 DEGREES REMARK 500 ARG A 391 CG - CD - NE ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 391 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 28 69.34 -119.81 REMARK 500 TYR A 88 -3.26 79.85 REMARK 500 SER A 106 -22.63 78.00 REMARK 500 ARG A 203 -122.72 53.51 REMARK 500 ARG A 231 -94.96 -107.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1018 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1019 DISTANCE = 6.49 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 502 DBREF1 6P7K A 22 449 UNP A0A2X1DZS9_9BURK DBREF2 6P7K A A0A2X1DZS9 1 428 SEQADV 6P7K MET A 2 UNP A0A2X1DZS INITIATING METHIONINE SEQADV 6P7K GLY A 3 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K SER A 4 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K SER A 5 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K HIS A 6 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K HIS A 7 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K HIS A 8 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K HIS A 9 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K HIS A 10 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K HIS A 11 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K SER A 12 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K SER A 13 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K GLY A 14 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K LEU A 15 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K VAL A 16 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K PRO A 17 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K ARG A 18 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K GLY A 19 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K SER A 20 UNP A0A2X1DZS EXPRESSION TAG SEQADV 6P7K HIS A 21 UNP A0A2X1DZS EXPRESSION TAG SEQRES 1 A 448 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 448 LEU VAL PRO ARG GLY SER HIS MET PRO ILE ASP SER ALA SEQRES 3 A 448 LEU PRO ASN PHE ARG SER LEU THR PRO GLU GLN ARG LEU SEQRES 4 A 448 SER HIS LEU ALA ARG VAL VAL GLY LEU ASP ASP ALA GLU SEQRES 5 A 448 HIS ALA LEU LEU ALA ARG PRO GLY ALA LEU PRO LEU ASP SEQRES 6 A 448 THR ALA ASN GLY MET ILE GLU ASN VAL ILE GLY THR PHE SEQRES 7 A 448 GLU LEU PRO MET ALA VAL THR GLY TYR PHE ARG ILE ASN SEQRES 8 A 448 ASP ARG ASP VAL ILE VAL PRO MET ALA VAL GLU GLU PRO SEQRES 9 A 448 SER ILE VAL ALA ALA ALA SER TYR MET ALA LYS LEU SER SEQRES 10 A 448 ARG ALA ALA GLY GLY PHE ARG THR SER SER SER GLY PRO SEQRES 11 A 448 LEU MET ARG ALA GLN VAL GLN VAL VAL GLY VAL ASP ASP SEQRES 12 A 448 PRO TYR GLY ALA ARG LEU ALA ILE LEU ARG HIS ALA ALA SEQRES 13 A 448 GLU LEU ILE ALA LEU ALA ASN SER ARG ASP LYS VAL LEU SEQRES 14 A 448 VAL GLY LEU GLY GLY GLY CYS ARG ASP ILE GLU VAL HIS SEQRES 15 A 448 VAL PHE PRO ASP THR PRO ARG GLY ALA MET ILE VAL ALA SEQRES 16 A 448 HIS LEU ILE VAL ASP VAL ARG ASP ALA MET GLY ALA ASN SEQRES 17 A 448 THR VAL ASN THR MET ALA GLU THR VAL ALA THR ARG ILE SEQRES 18 A 448 GLU ALA ILE THR GLY GLY GLN VAL ARG LEU ARG ILE LEU SEQRES 19 A 448 SER ASN LEU ALA ASP LEU ARG LEU ALA ARG ALA GLU VAL SEQRES 20 A 448 ARG TYR SER ALA ALA THR LEU ALA THR ASP ASP TYR ALA SEQRES 21 A 448 GLY GLU ALA VAL ILE ASP ARG VAL ILE ASP ALA TYR VAL SEQRES 22 A 448 PHE ALA ALA THR ASP PRO TYR ARG ALA ALA THR HIS ASN SEQRES 23 A 448 LYS GLY ILE MET ASN GLY ILE ASP PRO VAL VAL VAL ALA SEQRES 24 A 448 THR GLY ASN ASP TRP ARG ALA VAL GLU ALA GLY ALA HIS SEQRES 25 A 448 ALA TYR ALA SER ARG SER GLY ARG TYR THR SER LEU THR SEQRES 26 A 448 THR TRP GLU LYS ALA ALA ASN GLY ASP LEU VAL GLY THR SEQRES 27 A 448 ILE GLU MET PRO MET PRO VAL GLY LEU VAL GLY GLY ALA SEQRES 28 A 448 THR LYS THR HIS PRO LEU ALA ARG LEU ALA LEU LYS ILE SEQRES 29 A 448 MET ASN VAL THR SER ALA GLN GLU LEU GLY GLU ILE ALA SEQRES 30 A 448 VAL ALA VAL GLY LEU ALA GLN ASN LEU GLY ALA LEU ARG SEQRES 31 A 448 ALA LEU ALA THR GLU GLY ILE GLN ARG GLY HIS MET ALA SEQRES 32 A 448 LEU HIS ALA ARG ASN ILE ALA VAL ALA ALA GLY ALA THR SEQRES 33 A 448 GLY ALA ASP ILE ASP ARG ILE ALA GLN ARG MET VAL ALA SEQRES 34 A 448 ALA LYS ASP VAL ARG THR ASP PHE ALA VAL GLU LEU LEU SEQRES 35 A 448 ALA GLY ARG SER ASP GLY HET ADP A 501 38 HET COA A 502 80 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM COA COENZYME A FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 COA C21 H36 N7 O16 P3 S FORMUL 4 HOH *419(H2 O) HELIX 1 AA1 ASN A 30 LEU A 34 5 5 HELIX 2 AA2 THR A 35 GLY A 48 1 14 HELIX 3 AA3 ASP A 50 ARG A 59 1 10 HELIX 4 AA4 PRO A 64 ILE A 72 1 9 HELIX 5 AA5 SER A 106 ARG A 119 1 14 HELIX 6 AA6 ALA A 120 GLY A 122 5 3 HELIX 7 AA7 ASP A 144 HIS A 155 1 12 HELIX 8 AA8 HIS A 155 SER A 165 1 11 HELIX 9 AA9 ASP A 167 LEU A 173 1 7 HELIX 10 AB1 GLY A 207 GLY A 227 1 21 HELIX 11 AB2 SER A 251 ALA A 256 1 6 HELIX 12 AB3 ALA A 261 ASP A 279 1 19 HELIX 13 AB4 ASP A 279 THR A 301 1 23 HELIX 14 AB5 ASP A 304 SER A 317 1 14 HELIX 15 AB6 GLY A 351 HIS A 356 1 6 HELIX 16 AB7 HIS A 356 ASN A 367 1 12 HELIX 17 AB8 SER A 370 THR A 395 1 26 SHEET 1 AA1 2 MET A 83 THR A 86 0 SHEET 2 AA1 2 VAL A 98 ALA A 101 -1 O MET A 100 N ALA A 84 SHEET 1 AA2 2 ARG A 90 ILE A 91 0 SHEET 2 AA2 2 ARG A 94 ASP A 95 -1 O ARG A 94 N ILE A 91 SHEET 1 AA3 4 ARG A 125 SER A 128 0 SHEET 2 AA3 4 LEU A 243 TYR A 250 -1 O ARG A 245 N SER A 127 SHEET 3 AA3 4 LEU A 336 PRO A 343 -1 O LEU A 336 N TYR A 250 SHEET 4 AA3 4 THR A 326 LYS A 330 -1 N GLU A 329 O VAL A 337 SHEET 1 AA4 4 GLY A 176 PHE A 185 0 SHEET 2 AA4 4 MET A 193 ASP A 201 -1 O HIS A 197 N GLU A 181 SHEET 3 AA4 4 LEU A 132 VAL A 140 -1 N VAL A 139 O ILE A 194 SHEET 4 AA4 4 GLN A 229 SER A 236 -1 O ILE A 234 N GLN A 136 SITE 1 AC1 20 ASP A 167 VAL A 169 LEU A 173 VAL A 202 SITE 2 AC1 20 ARG A 203 ASP A 204 ALA A 205 MET A 206 SITE 3 AC1 20 GLY A 207 THR A 210 VAL A 349 GLY A 350 SITE 4 AC1 20 HOH A 606 HOH A 611 HOH A 614 HOH A 623 SITE 5 AC1 20 HOH A 629 HOH A 635 HOH A 710 HOH A 872 SITE 1 AC2 33 ARG A 32 GLU A 73 ASN A 74 TYR A 88 SITE 2 AC2 33 GLU A 104 SER A 106 ALA A 109 ALA A 110 SITE 3 AC2 33 SER A 112 TYR A 113 LYS A 116 GLY A 388 SITE 4 AC2 33 ALA A 389 ALA A 392 HOH A 607 HOH A 642 SITE 5 AC2 33 HOH A 644 HOH A 660 HOH A 672 HOH A 690 SITE 6 AC2 33 HOH A 703 HOH A 705 HOH A 734 HOH A 747 SITE 7 AC2 33 HOH A 775 HOH A 779 HOH A 807 HOH A 808 SITE 8 AC2 33 HOH A 829 HOH A 830 HOH A 854 HOH A 871 SITE 9 AC2 33 HOH A 875 CRYST1 141.485 141.485 122.967 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007068 0.004081 0.000000 0.00000 SCALE2 0.000000 0.008161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008132 0.00000