HEADER CELL CYCLE, TRANSFERASE 07-JUN-19 6P8G TITLE CRYSTAL STRUCTURE OF CDK4 IN COMPLEX WITH CYCLIND1 AND P27 COMPND MOL_ID: 1; COMPND 2 MOLECULE: G1/S-SPECIFIC CYCLIN-D1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: B-CELL LYMPHOMA 1 PROTEIN,BCL-1,BCL-1 ONCOGENE,PRAD1 COMPND 5 ONCOGENE; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIN-DEPENDENT KINASE 4; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CELL DIVISION PROTEIN KINASE 4,PSK-J3; COMPND 11 EC: 2.7.11.22; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: CYCLIN-DEPENDENT KINASE INHIBITOR 1B; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: CYCLIN-DEPENDENT KINASE INHIBITOR P27,P27KIP1; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCND1, BCL1, PRAD1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CDK4; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: CDKN1B, KIP1; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CYCLIN-DEPENDENT KINASE, KINASE INHIBITOR, CELL CYCLE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.Z.GUILEY,J.W.STEVENSON,K.LOU,K.J.BARKOVICH,K.BUNCH,S.M.TRIPATHI, AUTHOR 2 K.M.SHOKAT,S.M.RUBIN REVDAT 2 13-MAR-24 6P8G 1 REMARK REVDAT 1 25-DEC-19 6P8G 0 JRNL AUTH K.Z.GUILEY,J.W.STEVENSON,K.LOU,K.J.BARKOVICH,V.KUMARASAMY, JRNL AUTH 2 T.U.WIJERATNE,K.L.BUNCH,S.TRIPATHI,E.S.KNUDSEN, JRNL AUTH 3 A.K.WITKIEWICZ,K.M.SHOKAT,S.M.RUBIN JRNL TITL P27 ALLOSTERICALLY ACTIVATES CYCLIN-DEPENDENT KINASE 4 AND JRNL TITL 2 ANTAGONIZES PALBOCICLIB INHIBITION. JRNL REF SCIENCE V. 366 2019 JRNL REFN ESSN 1095-9203 JRNL PMID 31831640 JRNL DOI 10.1126/SCIENCE.AAW2106 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 19703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.7490 - 5.3556 1.00 2849 152 0.2037 0.2295 REMARK 3 2 5.3556 - 4.2511 1.00 2707 139 0.1872 0.2972 REMARK 3 3 4.2511 - 3.7138 0.99 2634 129 0.2180 0.2475 REMARK 3 4 3.7138 - 3.3742 0.99 2612 151 0.2411 0.3032 REMARK 3 5 3.3742 - 3.1324 1.00 2646 133 0.2440 0.2978 REMARK 3 6 3.1324 - 2.9477 1.00 2628 139 0.2698 0.3069 REMARK 3 7 2.9477 - 2.8001 1.00 2659 125 0.2587 0.2879 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4501 REMARK 3 ANGLE : 0.520 6095 REMARK 3 CHIRALITY : 0.037 688 REMARK 3 PLANARITY : 0.004 790 REMARK 3 DIHEDRAL : 7.207 2773 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1719 -17.1170 -19.4146 REMARK 3 T TENSOR REMARK 3 T11: 0.3799 T22: 0.4504 REMARK 3 T33: 0.2908 T12: 0.0062 REMARK 3 T13: -0.0420 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 3.2325 L22: 2.9305 REMARK 3 L33: 3.9610 L12: 1.7813 REMARK 3 L13: 2.1087 L23: 1.7817 REMARK 3 S TENSOR REMARK 3 S11: 0.4595 S12: -0.4736 S13: -0.5227 REMARK 3 S21: 0.6192 S22: -0.1627 S23: -0.1625 REMARK 3 S31: 0.5892 S32: 0.1218 S33: -0.3520 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0617 -7.6143 -13.9110 REMARK 3 T TENSOR REMARK 3 T11: 0.4446 T22: 0.5825 REMARK 3 T33: 0.3289 T12: -0.1051 REMARK 3 T13: 0.0799 T23: 0.0996 REMARK 3 L TENSOR REMARK 3 L11: 1.0502 L22: 4.6052 REMARK 3 L33: 4.0230 L12: -0.6830 REMARK 3 L13: -0.2292 L23: 1.9990 REMARK 3 S TENSOR REMARK 3 S11: -0.0692 S12: -0.2160 S13: -0.1844 REMARK 3 S21: 0.7812 S22: 0.1628 S23: 0.6488 REMARK 3 S31: 0.2324 S32: -0.3601 S33: -0.1097 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0196 5.8080 -4.9833 REMARK 3 T TENSOR REMARK 3 T11: 0.9714 T22: 0.7935 REMARK 3 T33: 0.5119 T12: 0.1321 REMARK 3 T13: 0.3019 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 4.7094 L22: 5.0169 REMARK 3 L33: 3.3908 L12: -2.3046 REMARK 3 L13: -0.3974 L23: -0.1029 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: -0.5889 S13: 0.4090 REMARK 3 S21: 0.6995 S22: 0.1664 S23: 0.8720 REMARK 3 S31: -0.5506 S32: -0.2010 S33: -0.3558 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 246 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3213 4.7991 -14.0157 REMARK 3 T TENSOR REMARK 3 T11: 0.5323 T22: 0.4212 REMARK 3 T33: 0.3273 T12: -0.1337 REMARK 3 T13: 0.1185 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 6.2752 L22: 5.1917 REMARK 3 L33: 5.0896 L12: -2.3232 REMARK 3 L13: -2.9018 L23: 0.7263 REMARK 3 S TENSOR REMARK 3 S11: 0.6079 S12: -0.7364 S13: 0.9443 REMARK 3 S21: 0.2849 S22: 0.1118 S23: -0.3506 REMARK 3 S31: -0.7705 S32: 0.5262 S33: -0.6242 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0800 -35.6364 -38.3684 REMARK 3 T TENSOR REMARK 3 T11: 0.6300 T22: 0.4485 REMARK 3 T33: 0.8153 T12: -0.0059 REMARK 3 T13: -0.1604 T23: 0.0635 REMARK 3 L TENSOR REMARK 3 L11: 4.6014 L22: 1.2769 REMARK 3 L33: 2.8918 L12: 2.4120 REMARK 3 L13: 2.2095 L23: 1.5536 REMARK 3 S TENSOR REMARK 3 S11: 0.4461 S12: -0.0512 S13: -1.4268 REMARK 3 S21: 0.9658 S22: -0.0527 S23: -0.2154 REMARK 3 S31: 1.0462 S32: 0.0835 S33: -0.4223 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 65 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7444 -38.7865 -18.4791 REMARK 3 T TENSOR REMARK 3 T11: 1.1068 T22: 0.7387 REMARK 3 T33: 0.9881 T12: -0.1983 REMARK 3 T13: -0.3934 T23: 0.3698 REMARK 3 L TENSOR REMARK 3 L11: 1.9847 L22: 9.0754 REMARK 3 L33: 7.4346 L12: 0.1941 REMARK 3 L13: -1.7850 L23: 0.6626 REMARK 3 S TENSOR REMARK 3 S11: 1.0411 S12: -0.2187 S13: -0.9825 REMARK 3 S21: 0.2709 S22: 0.0039 S23: 0.6978 REMARK 3 S31: 2.1454 S32: -0.1050 S33: -0.9412 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3623 -5.0260 -39.5248 REMARK 3 T TENSOR REMARK 3 T11: 0.3212 T22: 0.6706 REMARK 3 T33: 0.6232 T12: -0.0954 REMARK 3 T13: -0.0437 T23: 0.0545 REMARK 3 L TENSOR REMARK 3 L11: 2.4341 L22: 5.9200 REMARK 3 L33: 6.7540 L12: 3.6006 REMARK 3 L13: -0.6734 L23: -1.0892 REMARK 3 S TENSOR REMARK 3 S11: 1.2281 S12: -0.6261 S13: 0.3015 REMARK 3 S21: 0.5698 S22: -0.6656 S23: -1.5063 REMARK 3 S31: -0.2997 S32: 0.5897 S33: -0.3806 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5922 -21.2183 -49.3498 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.1330 REMARK 3 T33: 0.2927 T12: -0.0347 REMARK 3 T13: -0.0219 T23: 0.0486 REMARK 3 L TENSOR REMARK 3 L11: 3.9057 L22: 3.6748 REMARK 3 L33: 4.3775 L12: -0.7475 REMARK 3 L13: 0.2944 L23: 1.1758 REMARK 3 S TENSOR REMARK 3 S11: 0.1282 S12: 0.2575 S13: -0.0475 REMARK 3 S21: -0.2184 S22: -0.1230 S23: -0.0081 REMARK 3 S31: 0.0862 S32: 0.3823 S33: -0.0088 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0904 -26.0075 -43.4611 REMARK 3 T TENSOR REMARK 3 T11: 0.2569 T22: 0.1086 REMARK 3 T33: 0.2985 T12: 0.1167 REMARK 3 T13: -0.1586 T23: 0.1016 REMARK 3 L TENSOR REMARK 3 L11: 3.6938 L22: 2.4725 REMARK 3 L33: 3.3265 L12: -1.3684 REMARK 3 L13: -0.7622 L23: 1.4165 REMARK 3 S TENSOR REMARK 3 S11: -0.1017 S12: 0.0128 S13: -0.7148 REMARK 3 S21: 0.8346 S22: -0.0213 S23: 0.3812 REMARK 3 S31: 0.5454 S32: -0.6382 S33: -0.0490 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9914 -24.0670 -37.8438 REMARK 3 T TENSOR REMARK 3 T11: 0.2884 T22: 0.1565 REMARK 3 T33: 0.3242 T12: -0.0114 REMARK 3 T13: 0.0677 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 2.5793 L22: 3.1961 REMARK 3 L33: 2.0218 L12: -1.3196 REMARK 3 L13: 1.5730 L23: 0.8866 REMARK 3 S TENSOR REMARK 3 S11: 0.2233 S12: -0.0914 S13: -0.4972 REMARK 3 S21: 0.0879 S22: -0.1620 S23: 0.2464 REMARK 3 S31: 0.2637 S32: -0.0273 S33: -0.0774 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8664 0.9265 -44.7237 REMARK 3 T TENSOR REMARK 3 T11: 0.3315 T22: 0.2521 REMARK 3 T33: 0.1996 T12: 0.0065 REMARK 3 T13: 0.0292 T23: -0.0510 REMARK 3 L TENSOR REMARK 3 L11: 3.6235 L22: 1.9192 REMARK 3 L33: 1.7858 L12: -0.2797 REMARK 3 L13: 0.8697 L23: 0.7113 REMARK 3 S TENSOR REMARK 3 S11: -0.3210 S12: -0.2372 S13: 0.1112 REMARK 3 S21: 0.6903 S22: 0.1043 S23: 0.3020 REMARK 3 S31: -0.2446 S32: 0.3328 S33: 0.1519 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9253 -5.1516 -52.1682 REMARK 3 T TENSOR REMARK 3 T11: 0.3067 T22: 0.3090 REMARK 3 T33: 0.1215 T12: 0.0058 REMARK 3 T13: 0.0123 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 4.5994 L22: 7.4367 REMARK 3 L33: 1.1565 L12: 0.9458 REMARK 3 L13: -0.0274 L23: -2.8674 REMARK 3 S TENSOR REMARK 3 S11: -0.0984 S12: 0.1923 S13: 0.1690 REMARK 3 S21: 0.0163 S22: 0.0963 S23: 0.2653 REMARK 3 S31: 0.0643 S32: -0.0346 S33: 0.0120 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5929 8.7818 -58.4382 REMARK 3 T TENSOR REMARK 3 T11: 0.5274 T22: 0.3602 REMARK 3 T33: 0.5606 T12: 0.1440 REMARK 3 T13: -0.0649 T23: 0.1637 REMARK 3 L TENSOR REMARK 3 L11: 2.2595 L22: 5.4485 REMARK 3 L33: 3.4677 L12: 2.1665 REMARK 3 L13: -0.6385 L23: 2.7890 REMARK 3 S TENSOR REMARK 3 S11: -0.2887 S12: 0.6284 S13: 0.9836 REMARK 3 S21: -0.8557 S22: -0.3015 S23: 0.9504 REMARK 3 S31: -0.5117 S32: -0.5241 S33: 0.3766 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2211 0.5633 -54.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.2709 T22: 0.3452 REMARK 3 T33: 0.3248 T12: 0.0523 REMARK 3 T13: -0.0091 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 4.2943 L22: 4.3909 REMARK 3 L33: 9.7908 L12: -0.9873 REMARK 3 L13: 0.2579 L23: -6.2984 REMARK 3 S TENSOR REMARK 3 S11: 0.1636 S12: 0.5588 S13: -0.5047 REMARK 3 S21: -0.8058 S22: -0.4706 S23: -0.9510 REMARK 3 S31: 0.6461 S32: 1.1347 S33: 0.2438 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3853 -7.6666 -62.6769 REMARK 3 T TENSOR REMARK 3 T11: 0.5468 T22: 0.3458 REMARK 3 T33: 0.2937 T12: 0.0121 REMARK 3 T13: 0.0033 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 6.3882 L22: 3.0844 REMARK 3 L33: 7.7983 L12: 2.2795 REMARK 3 L13: 6.4018 L23: 1.8625 REMARK 3 S TENSOR REMARK 3 S11: 0.3295 S12: 1.7798 S13: -0.6467 REMARK 3 S21: -0.3110 S22: 0.3052 S23: -0.0681 REMARK 3 S31: 0.3355 S32: 0.6608 S33: -0.4785 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1929 -28.4793 -21.2147 REMARK 3 T TENSOR REMARK 3 T11: 0.5783 T22: 0.5946 REMARK 3 T33: 0.6227 T12: 0.0017 REMARK 3 T13: -0.0312 T23: 0.2047 REMARK 3 L TENSOR REMARK 3 L11: 2.5611 L22: 1.4522 REMARK 3 L33: 6.4813 L12: -1.2901 REMARK 3 L13: 4.2727 L23: -1.4676 REMARK 3 S TENSOR REMARK 3 S11: -0.1692 S12: -2.8434 S13: -1.9015 REMARK 3 S21: 0.3548 S22: 0.9143 S23: 0.4109 REMARK 3 S31: 0.0957 S32: -1.0905 S33: -0.6680 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7227 -17.8418 -29.5692 REMARK 3 T TENSOR REMARK 3 T11: 0.4446 T22: 0.3806 REMARK 3 T33: 0.2575 T12: -0.1178 REMARK 3 T13: -0.0720 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 4.1583 L22: 7.4042 REMARK 3 L33: 6.1134 L12: 2.3186 REMARK 3 L13: -4.7981 L23: -1.1536 REMARK 3 S TENSOR REMARK 3 S11: 0.5264 S12: -1.3874 S13: -0.4874 REMARK 3 S21: 0.0121 S22: -0.5542 S23: -0.6685 REMARK 3 S31: -0.6665 S32: 0.6179 S33: -0.0490 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000240765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 92.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS (7.0) 200MM MGCL2 10% PEG REMARK 280 8000, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.29000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.42500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.29000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.42500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 19 REMARK 465 GLN A 263 REMARK 465 GLN A 264 REMARK 465 ASN A 265 REMARK 465 MET A 266 REMARK 465 ASP A 267 REMARK 465 GLY B -1 REMARK 465 GLU B 0 REMARK 465 PHE B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 ARG B 5 REMARK 465 TYR B 6 REMARK 465 GLU B 7 REMARK 465 PRO B 8 REMARK 465 VAL B 9 REMARK 465 ALA B 10 REMARK 465 GLU B 11 REMARK 465 ILE B 12 REMARK 465 GLY B 13 REMARK 465 VAL B 14 REMARK 465 GLY B 15 REMARK 465 ALA B 16 REMARK 465 TYR B 17 REMARK 465 PRO B 26 REMARK 465 HIS B 27 REMARK 465 SER B 28 REMARK 465 ARG B 79 REMARK 465 THR B 80 REMARK 465 ASP B 81 REMARK 465 ALA B 159 REMARK 465 ARG B 160 REMARK 465 ILE B 161 REMARK 465 TYR B 162 REMARK 465 SER B 163 REMARK 465 TYR B 164 REMARK 465 GLN B 165 REMARK 465 MET B 166 REMARK 465 ALA B 167 REMARK 465 LEU B 168 REMARK 465 THR B 169 REMARK 465 PRO B 170 REMARK 465 VAL B 171 REMARK 465 VAL B 172 REMARK 465 GLY B 297 REMARK 465 ASN B 298 REMARK 465 PRO B 299 REMARK 465 GLU B 300 REMARK 465 GLY C 22 REMARK 465 GLU C 23 REMARK 465 PHE C 24 REMARK 465 GLU C 80 REMARK 465 LYS C 81 REMARK 465 GLY C 82 REMARK 465 SER C 83 REMARK 465 LEU C 84 REMARK 465 PRO C 85 REMARK 465 GLU C 86 REMARK 465 PHE C 87 REMARK 465 GLU C 88 REMARK 465 GLU C 89 REMARK 465 ARG C 90 REMARK 465 PRO C 91 REMARK 465 PRO C 92 REMARK 465 ARG C 93 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 21 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 38 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 82 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 THR B 187 OG1 CG2 REMARK 470 GLN C 57 CG CD OE1 NE2 REMARK 470 ARG C 58 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 68 CG CD CE NZ REMARK 470 GLU C 71 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 70.82 59.79 REMARK 500 LYS A 194 -5.32 -57.96 REMARK 500 LYS A 238 73.88 62.36 REMARK 500 HIS B 30 -137.37 -108.13 REMARK 500 LYS B 35 118.77 -165.20 REMARK 500 ASN B 41 145.12 73.01 REMARK 500 GLU B 44 54.65 -144.67 REMARK 500 GLU B 64 74.45 54.76 REMARK 500 ARG B 136 -14.64 67.19 REMARK 500 ASP B 137 75.26 -152.98 REMARK 500 ASP B 155 70.96 57.94 REMARK 500 ALA B 189 -146.18 -134.01 REMARK 500 PRO B 191 -9.90 -59.78 REMARK 500 ASN B 214 -81.14 -76.30 REMARK 500 PRO B 231 -159.21 -70.20 REMARK 500 LEU B 273 49.53 -96.72 REMARK 500 LEU C 70 -164.61 -119.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 6P8G A 19 267 UNP P24385 CCND1_HUMAN 19 267 DBREF 6P8G B 2 300 UNP P11802 CDK4_HUMAN 2 303 DBREF 6P8G C 25 93 UNP P46527 CDN1B_HUMAN 25 93 SEQADV 6P8G GLY B -1 UNP P11802 EXPRESSION TAG SEQADV 6P8G GLU B 0 UNP P11802 EXPRESSION TAG SEQADV 6P8G PHE B 1 UNP P11802 EXPRESSION TAG SEQADV 6P8G B UNP P11802 GLY 42 DELETION SEQADV 6P8G B UNP P11802 GLY 43 DELETION SEQADV 6P8G B UNP P11802 GLY 44 DELETION SEQADV 6P8G GLU B 43 UNP P11802 GLY 46 ENGINEERED MUTATION SEQADV 6P8G GLU B 44 UNP P11802 GLY 47 ENGINEERED MUTATION SEQADV 6P8G GLY C 22 UNP P46527 EXPRESSION TAG SEQADV 6P8G GLU C 23 UNP P46527 EXPRESSION TAG SEQADV 6P8G PHE C 24 UNP P46527 EXPRESSION TAG SEQADV 6P8G GLU C 74 UNP P46527 TYR 74 ENGINEERED MUTATION SEQADV 6P8G GLU C 88 UNP P46527 TYR 88 ENGINEERED MUTATION SEQADV 6P8G GLU C 89 UNP P46527 TYR 89 ENGINEERED MUTATION SEQRES 1 A 249 ASP ALA ASN LEU LEU ASN ASP ARG VAL LEU ARG ALA MET SEQRES 2 A 249 LEU LYS ALA GLU GLU THR CYS ALA PRO SER VAL SER TYR SEQRES 3 A 249 PHE LYS CYS VAL GLN LYS GLU VAL LEU PRO SER MET ARG SEQRES 4 A 249 LYS ILE VAL ALA THR TRP MET LEU GLU VAL CYS GLU GLU SEQRES 5 A 249 GLN LYS CYS GLU GLU GLU VAL PHE PRO LEU ALA MET ASN SEQRES 6 A 249 TYR LEU ASP ARG PHE LEU SER LEU GLU PRO VAL LYS LYS SEQRES 7 A 249 SER ARG LEU GLN LEU LEU GLY ALA THR CYS MET PHE VAL SEQRES 8 A 249 ALA SER LYS MET LYS GLU THR ILE PRO LEU THR ALA GLU SEQRES 9 A 249 LYS LEU CYS ILE TYR THR ASP ASN SER ILE ARG PRO GLU SEQRES 10 A 249 GLU LEU LEU GLN MET GLU LEU LEU LEU VAL ASN LYS LEU SEQRES 11 A 249 LYS TRP ASN LEU ALA ALA MET THR PRO HIS ASP PHE ILE SEQRES 12 A 249 GLU HIS PHE LEU SER LYS MET PRO GLU ALA GLU GLU ASN SEQRES 13 A 249 LYS GLN ILE ILE ARG LYS HIS ALA GLN THR PHE VAL ALA SEQRES 14 A 249 LEU CYS ALA THR ASP VAL LYS PHE ILE SER ASN PRO PRO SEQRES 15 A 249 SER MET VAL ALA ALA GLY SER VAL VAL ALA ALA VAL GLN SEQRES 16 A 249 GLY LEU ASN LEU ARG SER PRO ASN ASN PHE LEU SER TYR SEQRES 17 A 249 TYR ARG LEU THR ARG PHE LEU SER ARG VAL ILE LYS CYS SEQRES 18 A 249 ASP PRO ASP CYS LEU ARG ALA CYS GLN GLU GLN ILE GLU SEQRES 19 A 249 ALA LEU LEU GLU SER SER LEU ARG GLN ALA GLN GLN ASN SEQRES 20 A 249 MET ASP SEQRES 1 B 302 GLY GLU PHE ALA THR SER ARG TYR GLU PRO VAL ALA GLU SEQRES 2 B 302 ILE GLY VAL GLY ALA TYR GLY THR VAL TYR LYS ALA ARG SEQRES 3 B 302 ASP PRO HIS SER GLY HIS PHE VAL ALA LEU LYS SER VAL SEQRES 4 B 302 ARG VAL PRO ASN GLY GLU GLU GLY LEU PRO ILE SER THR SEQRES 5 B 302 VAL ARG GLU VAL ALA LEU LEU ARG ARG LEU GLU ALA PHE SEQRES 6 B 302 GLU HIS PRO ASN VAL VAL ARG LEU MET ASP VAL CYS ALA SEQRES 7 B 302 THR SER ARG THR ASP ARG GLU ILE LYS VAL THR LEU VAL SEQRES 8 B 302 PHE GLU HIS VAL ASP GLN ASP LEU ARG THR TYR LEU ASP SEQRES 9 B 302 LYS ALA PRO PRO PRO GLY LEU PRO ALA GLU THR ILE LYS SEQRES 10 B 302 ASP LEU MET ARG GLN PHE LEU ARG GLY LEU ASP PHE LEU SEQRES 11 B 302 HIS ALA ASN CYS ILE VAL HIS ARG ASP LEU LYS PRO GLU SEQRES 12 B 302 ASN ILE LEU VAL THR SER GLY GLY THR VAL LYS LEU ALA SEQRES 13 B 302 ASP PHE GLY LEU ALA ARG ILE TYR SER TYR GLN MET ALA SEQRES 14 B 302 LEU THR PRO VAL VAL VAL THR LEU TRP TYR ARG ALA PRO SEQRES 15 B 302 GLU VAL LEU LEU GLN SER THR TYR ALA THR PRO VAL ASP SEQRES 16 B 302 MET TRP SER VAL GLY CYS ILE PHE ALA GLU MET PHE ARG SEQRES 17 B 302 ARG LYS PRO LEU PHE CYS GLY ASN SER GLU ALA ASP GLN SEQRES 18 B 302 LEU GLY LYS ILE PHE ASP LEU ILE GLY LEU PRO PRO GLU SEQRES 19 B 302 ASP ASP TRP PRO ARG ASP VAL SER LEU PRO ARG GLY ALA SEQRES 20 B 302 PHE PRO PRO ARG GLY PRO ARG PRO VAL GLN SER VAL VAL SEQRES 21 B 302 PRO GLU MET GLU GLU SER GLY ALA GLN LEU LEU LEU GLU SEQRES 22 B 302 MET LEU THR PHE ASN PRO HIS LYS ARG ILE SER ALA PHE SEQRES 23 B 302 ARG ALA LEU GLN HIS SER TYR LEU HIS LYS ASP GLU GLY SEQRES 24 B 302 ASN PRO GLU SEQRES 1 C 72 GLY GLU PHE LYS PRO SER ALA CYS ARG ASN LEU PHE GLY SEQRES 2 C 72 PRO VAL ASP HIS GLU GLU LEU THR ARG ASP LEU GLU LYS SEQRES 3 C 72 HIS CYS ARG ASP MET GLU GLU ALA SER GLN ARG LYS TRP SEQRES 4 C 72 ASN PHE ASP PHE GLN ASN HIS LYS PRO LEU GLU GLY LYS SEQRES 5 C 72 GLU GLU TRP GLN GLU VAL GLU LYS GLY SER LEU PRO GLU SEQRES 6 C 72 PHE GLU GLU ARG PRO PRO ARG HELIX 1 AA1 ALA A 20 ASP A 25 1 6 HELIX 2 AA2 ASP A 25 GLU A 35 1 11 HELIX 3 AA3 SER A 43 VAL A 48 1 6 HELIX 4 AA4 LEU A 53 GLN A 71 1 19 HELIX 5 AA5 GLU A 76 SER A 90 1 15 HELIX 6 AA6 LYS A 95 SER A 97 5 3 HELIX 7 AA7 ARG A 98 GLU A 115 1 18 HELIX 8 AA8 THR A 120 THR A 128 1 9 HELIX 9 AA9 ARG A 133 LEU A 148 1 16 HELIX 10 AB1 THR A 156 SER A 166 1 11 HELIX 11 AB2 ALA A 171 THR A 191 1 21 HELIX 12 AB3 ASP A 192 ILE A 196 5 5 HELIX 13 AB4 PRO A 199 GLN A 213 1 15 HELIX 14 AB5 GLY A 214 LEU A 217 5 4 HELIX 15 AB6 SER A 225 ILE A 237 1 13 HELIX 16 AB7 ASP A 240 GLN A 261 1 22 HELIX 17 AB8 PRO B 47 GLU B 61 1 15 HELIX 18 AB9 ASP B 96 LYS B 103 1 8 HELIX 19 AC1 PRO B 110 ASN B 131 1 22 HELIX 20 AC2 ALA B 179 LEU B 184 1 6 HELIX 21 AC3 THR B 190 ARG B 207 1 18 HELIX 22 AC4 SER B 215 PHE B 224 1 10 HELIX 23 AC5 PRO B 242 PHE B 246 5 5 HELIX 24 AC6 PRO B 253 VAL B 257 5 5 HELIX 25 AC7 GLU B 262 LEU B 273 1 12 HELIX 26 AC8 SER B 282 GLN B 288 1 7 HELIX 27 AC9 HIS B 289 HIS B 293 5 5 HELIX 28 AD1 ASP C 37 ASN C 61 1 25 SHEET 1 AA1 5 LEU B 71 THR B 77 0 SHEET 2 AA1 5 ILE B 84 GLU B 91 -1 O THR B 87 N CYS B 75 SHEET 3 AA1 5 PHE B 31 VAL B 39 -1 N ALA B 33 O PHE B 90 SHEET 4 AA1 5 LYS B 22 ARG B 24 -1 N ALA B 23 O VAL B 32 SHEET 5 AA1 5 GLU C 75 GLN C 77 -1 O GLN C 77 N LYS B 22 SHEET 1 AA2 2 LEU B 144 VAL B 145 0 SHEET 2 AA2 2 VAL B 151 LYS B 152 -1 O LYS B 152 N LEU B 144 SHEET 1 AA3 2 PHE C 62 ASP C 63 0 SHEET 2 AA3 2 LYS C 68 PRO C 69 -1 O LYS C 68 N ASP C 63 CRYST1 62.580 66.730 184.850 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005410 0.00000