HEADER CELL CYCLE, TRANSFERASE 07-JUN-19 6P8H TITLE CRYSTAL STRUCTURE OF CDK4 IN COMPLEX WITH CYCLIND1 AND P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: G1/S-SPECIFIC CYCLIN-D1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: B-CELL LYMPHOMA 1 PROTEIN,BCL-1,BCL-1 ONCOGENE,PRAD1 COMPND 5 ONCOGENE; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIN-DEPENDENT KINASE 4; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CELL DIVISION PROTEIN KINASE 4,PSK-J3; COMPND 11 EC: 2.7.11.22; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: CYCLIN-DEPENDENT KINASE INHIBITOR 1; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: CDK-INTERACTING PROTEIN 1,MELANOMA DIFFERENTIATION- COMPND 17 ASSOCIATED PROTEIN 6,MDA-6,P21; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCND1, BCL1, PRAD1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CDK4; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: CDKN1A, CAP20, CDKN1, CIP1, MDA6, PIC1, SDI1, WAF1; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS CYCLIN-DEPENDENT KINASE, KINASE INHIBITOR, CELL CYCLE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.Z.GUILEY,J.W.STEVENSON,K.LOU,K.J.BARKOVICH,K.BUNCH,S.M.TRIPATHI, AUTHOR 2 K.M.SHOKAT,S.M.RUBIN REVDAT 2 11-OCT-23 6P8H 1 REMARK REVDAT 1 25-DEC-19 6P8H 0 JRNL AUTH K.Z.GUILEY,J.W.STEVENSON,K.LOU,K.J.BARKOVICH,V.KUMARASAMY, JRNL AUTH 2 T.U.WIJERATNE,K.L.BUNCH,S.TRIPATHI,E.S.KNUDSEN, JRNL AUTH 3 A.K.WITKIEWICZ,K.M.SHOKAT,S.M.RUBIN JRNL TITL P27 ALLOSTERICALLY ACTIVATES CYCLIN-DEPENDENT KINASE 4 AND JRNL TITL 2 ANTAGONIZES PALBOCICLIB INHIBITION. JRNL REF SCIENCE V. 366 2019 JRNL REFN ESSN 1095-9203 JRNL PMID 31831640 JRNL DOI 10.1126/SCIENCE.AAW2106 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 13772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7026 - 5.4526 1.00 2735 169 0.1873 0.2175 REMARK 3 2 5.4526 - 4.3290 1.00 2613 148 0.1847 0.2525 REMARK 3 3 4.3290 - 3.7821 1.00 2591 131 0.2001 0.2818 REMARK 3 4 3.7821 - 3.4365 1.00 2568 139 0.2274 0.2705 REMARK 3 5 3.4365 - 3.1902 1.00 2544 134 0.2868 0.3507 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4477 REMARK 3 ANGLE : 0.492 6062 REMARK 3 CHIRALITY : 0.037 687 REMARK 3 PLANARITY : 0.004 787 REMARK 3 DIHEDRAL : 7.920 2761 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 19:156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3608 -13.3318 -43.5482 REMARK 3 T TENSOR REMARK 3 T11: 0.3736 T22: 0.3869 REMARK 3 T33: 0.4310 T12: 0.0184 REMARK 3 T13: 0.0608 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 2.2054 L22: 4.0958 REMARK 3 L33: 4.1852 L12: -0.0317 REMARK 3 L13: -0.6564 L23: -0.7919 REMARK 3 S TENSOR REMARK 3 S11: 0.1922 S12: -0.0503 S13: 0.4364 REMARK 3 S21: -0.0685 S22: 0.0290 S23: -0.1504 REMARK 3 S31: -0.4756 S32: -0.2248 S33: -0.2058 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 157:262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1216 -31.8453 -54.3308 REMARK 3 T TENSOR REMARK 3 T11: 0.2949 T22: 0.5247 REMARK 3 T33: 0.3574 T12: 0.0604 REMARK 3 T13: -0.0369 T23: 0.0743 REMARK 3 L TENSOR REMARK 3 L11: 5.2081 L22: 8.1149 REMARK 3 L33: 4.7082 L12: 3.8424 REMARK 3 L13: -2.5537 L23: -0.8474 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: 0.5344 S13: 0.0146 REMARK 3 S21: -0.3575 S22: 0.0848 S23: 0.0788 REMARK 3 S31: 0.0781 S32: -0.0991 S33: -0.0187 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 18:153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2322 -15.0266 -20.7964 REMARK 3 T TENSOR REMARK 3 T11: 0.5963 T22: 0.6499 REMARK 3 T33: 0.4813 T12: 0.0309 REMARK 3 T13: 0.1127 T23: -0.1270 REMARK 3 L TENSOR REMARK 3 L11: 5.0334 L22: 2.7979 REMARK 3 L33: 2.5552 L12: 2.1730 REMARK 3 L13: -1.9996 L23: -1.7685 REMARK 3 S TENSOR REMARK 3 S11: 0.5824 S12: -0.4533 S13: 0.6942 REMARK 3 S21: 0.5404 S22: -0.1229 S23: 0.4789 REMARK 3 S31: -0.6511 S32: -0.4479 S33: -0.4448 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 154:295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8516 -36.5557 -10.6482 REMARK 3 T TENSOR REMARK 3 T11: 0.6045 T22: 0.6518 REMARK 3 T33: 0.3616 T12: -0.0123 REMARK 3 T13: -0.1078 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 5.1444 L22: 7.5460 REMARK 3 L33: 7.2320 L12: -0.3125 REMARK 3 L13: 1.7734 L23: -2.2323 REMARK 3 S TENSOR REMARK 3 S11: 0.3582 S12: -0.4214 S13: -0.3253 REMARK 3 S21: 0.7957 S22: -0.1627 S23: -0.3015 REMARK 3 S31: 0.4268 S32: -0.2723 S33: -0.1678 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN C AND RESID 14:15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6064 -8.0391 -50.9608 REMARK 3 T TENSOR REMARK 3 T11: 0.6643 T22: 1.1995 REMARK 3 T33: 0.9835 T12: -0.1301 REMARK 3 T13: 0.4317 T23: 0.1492 REMARK 3 L TENSOR REMARK 3 L11: 1.6222 L22: 6.9766 REMARK 3 L33: 2.7670 L12: 0.5895 REMARK 3 L13: 0.8918 L23: 2.3671 REMARK 3 S TENSOR REMARK 3 S11: 0.1249 S12: -0.1852 S13: 0.3022 REMARK 3 S21: -0.9219 S22: 0.9051 S23: -0.7065 REMARK 3 S31: -0.6168 S32: 0.9834 S33: -0.7340 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN C AND RESID 16:56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8836 5.1752 -28.7069 REMARK 3 T TENSOR REMARK 3 T11: 1.3374 T22: 0.5830 REMARK 3 T33: 1.5633 T12: 0.0793 REMARK 3 T13: 0.2960 T23: -0.2077 REMARK 3 L TENSOR REMARK 3 L11: 0.9595 L22: 0.4918 REMARK 3 L33: 2.2993 L12: 0.4958 REMARK 3 L13: -0.6716 L23: -1.0048 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.3994 S13: 1.1043 REMARK 3 S21: 0.8215 S22: 0.0336 S23: -0.0570 REMARK 3 S31: -0.9799 S32: -0.1920 S33: 0.1339 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000241272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13821 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.190 REMARK 200 RESOLUTION RANGE LOW (A) : 92.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.83700 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2W96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS (7.0), 10% PEG 8000 200MM REMARK 280 MGCL2, PH 7.0, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.31000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.68000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.31000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 263 REMARK 465 GLN A 264 REMARK 465 ASN A 265 REMARK 465 MET A 266 REMARK 465 ASP A 267 REMARK 465 GLY B -1 REMARK 465 GLU B 0 REMARK 465 PHE B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 ARG B 5 REMARK 465 TYR B 6 REMARK 465 GLU B 7 REMARK 465 PRO B 8 REMARK 465 VAL B 9 REMARK 465 ALA B 10 REMARK 465 GLU B 11 REMARK 465 ILE B 12 REMARK 465 GLY B 13 REMARK 465 VAL B 14 REMARK 465 GLY B 15 REMARK 465 ALA B 16 REMARK 465 TYR B 17 REMARK 465 HIS B 27 REMARK 465 SER B 28 REMARK 465 ARG B 79 REMARK 465 THR B 80 REMARK 465 ASP B 81 REMARK 465 ALA B 159 REMARK 465 ARG B 160 REMARK 465 ILE B 161 REMARK 465 TYR B 162 REMARK 465 SER B 163 REMARK 465 TYR B 164 REMARK 465 GLN B 165 REMARK 465 MET B 166 REMARK 465 ALA B 167 REMARK 465 LEU B 168 REMARK 465 THR B 169 REMARK 465 PRO B 170 REMARK 465 VAL B 171 REMARK 465 VAL B 172 REMARK 465 VAL B 173 REMARK 465 GLU B 296 REMARK 465 GLY B 297 REMARK 465 ASN B 298 REMARK 465 PRO B 299 REMARK 465 GLU B 300 REMARK 465 GLY C 6 REMARK 465 GLU C 7 REMARK 465 PHE C 8 REMARK 465 ARG C 9 REMARK 465 GLN C 10 REMARK 465 ASN C 11 REMARK 465 PRO C 12 REMARK 465 CYS C 13 REMARK 465 VAL C 68 REMARK 465 ARG C 69 REMARK 465 GLY C 70 REMARK 465 LEU C 71 REMARK 465 GLY C 72 REMARK 465 LEU C 73 REMARK 465 PRO C 74 REMARK 465 LYS C 75 REMARK 465 LEU C 76 REMARK 465 TYR C 77 REMARK 465 LEU C 78 REMARK 465 PRO C 79 REMARK 465 THR C 80 REMARK 465 GLY C 81 REMARK 465 PRO C 82 REMARK 465 ARG C 83 REMARK 465 ARG C 84 REMARK 465 GLY C 85 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 30 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 38 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 294 CG CD CE NZ REMARK 470 TRP C 65 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 65 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 169 44.84 -80.13 REMARK 500 LYS A 238 71.61 63.79 REMARK 500 ALA B 23 -66.93 -126.95 REMARK 500 ARG B 24 97.96 74.14 REMARK 500 HIS B 30 79.37 -150.60 REMARK 500 GLU B 64 -70.88 61.36 REMARK 500 HIS B 65 136.66 69.46 REMARK 500 ARG B 136 -28.00 69.34 REMARK 500 ASP B 155 73.66 57.52 REMARK 500 SER B 186 -138.41 -138.91 REMARK 500 TYR B 188 -77.00 -73.02 REMARK 500 ALA B 189 -158.70 60.76 REMARK 500 ARG B 207 -0.26 63.79 REMARK 500 ASN B 214 -74.06 -85.68 REMARK 500 LEU B 273 48.46 -90.86 REMARK 500 LYS B 294 -150.01 -126.74 REMARK 500 PHE C 22 51.94 -140.89 REMARK 500 ASN C 50 86.20 -61.45 REMARK 500 PHE C 51 105.05 -168.16 REMARK 500 GLU C 56 67.71 35.67 REMARK 500 THR C 57 -60.66 -146.78 REMARK 500 LEU C 59 -120.43 -129.31 REMARK 500 GLU C 60 83.24 53.36 REMARK 500 ASP C 62 -13.57 -150.54 REMARK 500 TRP C 65 106.68 64.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 6P8H A 19 267 UNP P24385 CCND1_HUMAN 19 267 DBREF 6P8H B 2 300 UNP P11802 CDK4_HUMAN 2 303 DBREF 6P8H C 9 85 UNP P38936 CDN1A_HUMAN 9 85 SEQADV 6P8H GLY B -1 UNP P11802 EXPRESSION TAG SEQADV 6P8H GLU B 0 UNP P11802 EXPRESSION TAG SEQADV 6P8H PHE B 1 UNP P11802 EXPRESSION TAG SEQADV 6P8H B UNP P11802 GLY 42 DELETION SEQADV 6P8H B UNP P11802 GLY 43 DELETION SEQADV 6P8H B UNP P11802 GLY 44 DELETION SEQADV 6P8H GLU B 43 UNP P11802 GLY 46 CONFLICT SEQADV 6P8H GLU B 44 UNP P11802 GLY 47 CONFLICT SEQADV 6P8H GLY C 6 UNP P38936 EXPRESSION TAG SEQADV 6P8H GLU C 7 UNP P38936 EXPRESSION TAG SEQADV 6P8H PHE C 8 UNP P38936 EXPRESSION TAG SEQRES 1 A 249 ASP ALA ASN LEU LEU ASN ASP ARG VAL LEU ARG ALA MET SEQRES 2 A 249 LEU LYS ALA GLU GLU THR CYS ALA PRO SER VAL SER TYR SEQRES 3 A 249 PHE LYS CYS VAL GLN LYS GLU VAL LEU PRO SER MET ARG SEQRES 4 A 249 LYS ILE VAL ALA THR TRP MET LEU GLU VAL CYS GLU GLU SEQRES 5 A 249 GLN LYS CYS GLU GLU GLU VAL PHE PRO LEU ALA MET ASN SEQRES 6 A 249 TYR LEU ASP ARG PHE LEU SER LEU GLU PRO VAL LYS LYS SEQRES 7 A 249 SER ARG LEU GLN LEU LEU GLY ALA THR CYS MET PHE VAL SEQRES 8 A 249 ALA SER LYS MET LYS GLU THR ILE PRO LEU THR ALA GLU SEQRES 9 A 249 LYS LEU CYS ILE TYR THR ASP ASN SER ILE ARG PRO GLU SEQRES 10 A 249 GLU LEU LEU GLN MET GLU LEU LEU LEU VAL ASN LYS LEU SEQRES 11 A 249 LYS TRP ASN LEU ALA ALA MET THR PRO HIS ASP PHE ILE SEQRES 12 A 249 GLU HIS PHE LEU SER LYS MET PRO GLU ALA GLU GLU ASN SEQRES 13 A 249 LYS GLN ILE ILE ARG LYS HIS ALA GLN THR PHE VAL ALA SEQRES 14 A 249 LEU CYS ALA THR ASP VAL LYS PHE ILE SER ASN PRO PRO SEQRES 15 A 249 SER MET VAL ALA ALA GLY SER VAL VAL ALA ALA VAL GLN SEQRES 16 A 249 GLY LEU ASN LEU ARG SER PRO ASN ASN PHE LEU SER TYR SEQRES 17 A 249 TYR ARG LEU THR ARG PHE LEU SER ARG VAL ILE LYS CYS SEQRES 18 A 249 ASP PRO ASP CYS LEU ARG ALA CYS GLN GLU GLN ILE GLU SEQRES 19 A 249 ALA LEU LEU GLU SER SER LEU ARG GLN ALA GLN GLN ASN SEQRES 20 A 249 MET ASP SEQRES 1 B 302 GLY GLU PHE ALA THR SER ARG TYR GLU PRO VAL ALA GLU SEQRES 2 B 302 ILE GLY VAL GLY ALA TYR GLY THR VAL TYR LYS ALA ARG SEQRES 3 B 302 ASP PRO HIS SER GLY HIS PHE VAL ALA LEU LYS SER VAL SEQRES 4 B 302 ARG VAL PRO ASN GLY GLU GLU GLY LEU PRO ILE SER THR SEQRES 5 B 302 VAL ARG GLU VAL ALA LEU LEU ARG ARG LEU GLU ALA PHE SEQRES 6 B 302 GLU HIS PRO ASN VAL VAL ARG LEU MET ASP VAL CYS ALA SEQRES 7 B 302 THR SER ARG THR ASP ARG GLU ILE LYS VAL THR LEU VAL SEQRES 8 B 302 PHE GLU HIS VAL ASP GLN ASP LEU ARG THR TYR LEU ASP SEQRES 9 B 302 LYS ALA PRO PRO PRO GLY LEU PRO ALA GLU THR ILE LYS SEQRES 10 B 302 ASP LEU MET ARG GLN PHE LEU ARG GLY LEU ASP PHE LEU SEQRES 11 B 302 HIS ALA ASN CYS ILE VAL HIS ARG ASP LEU LYS PRO GLU SEQRES 12 B 302 ASN ILE LEU VAL THR SER GLY GLY THR VAL LYS LEU ALA SEQRES 13 B 302 ASP PHE GLY LEU ALA ARG ILE TYR SER TYR GLN MET ALA SEQRES 14 B 302 LEU THR PRO VAL VAL VAL THR LEU TRP TYR ARG ALA PRO SEQRES 15 B 302 GLU VAL LEU LEU GLN SER THR TYR ALA THR PRO VAL ASP SEQRES 16 B 302 MET TRP SER VAL GLY CYS ILE PHE ALA GLU MET PHE ARG SEQRES 17 B 302 ARG LYS PRO LEU PHE CYS GLY ASN SER GLU ALA ASP GLN SEQRES 18 B 302 LEU GLY LYS ILE PHE ASP LEU ILE GLY LEU PRO PRO GLU SEQRES 19 B 302 ASP ASP TRP PRO ARG ASP VAL SER LEU PRO ARG GLY ALA SEQRES 20 B 302 PHE PRO PRO ARG GLY PRO ARG PRO VAL GLN SER VAL VAL SEQRES 21 B 302 PRO GLU MET GLU GLU SER GLY ALA GLN LEU LEU LEU GLU SEQRES 22 B 302 MET LEU THR PHE ASN PRO HIS LYS ARG ILE SER ALA PHE SEQRES 23 B 302 ARG ALA LEU GLN HIS SER TYR LEU HIS LYS ASP GLU GLY SEQRES 24 B 302 ASN PRO GLU SEQRES 1 C 80 GLY GLU PHE ARG GLN ASN PRO CYS GLY SER LYS ALA CYS SEQRES 2 C 80 ARG ARG LEU PHE GLY PRO VAL ASP SER GLU GLN LEU SER SEQRES 3 C 80 ARG ASP CYS ASP ALA LEU MET ALA GLY CYS ILE GLN GLU SEQRES 4 C 80 ALA ARG GLU ARG TRP ASN PHE ASP PHE VAL THR GLU THR SEQRES 5 C 80 PRO LEU GLU GLY ASP PHE ALA TRP GLU ARG VAL ARG GLY SEQRES 6 C 80 LEU GLY LEU PRO LYS LEU TYR LEU PRO THR GLY PRO ARG SEQRES 7 C 80 ARG GLY HELIX 1 AA1 ASP A 19 GLU A 36 1 18 HELIX 2 AA2 LEU A 53 GLN A 71 1 19 HELIX 3 AA3 GLU A 76 SER A 90 1 15 HELIX 4 AA4 ARG A 98 GLU A 115 1 18 HELIX 5 AA5 THR A 120 THR A 128 1 9 HELIX 6 AA6 ARG A 133 LEU A 148 1 16 HELIX 7 AA7 THR A 156 MET A 168 1 13 HELIX 8 AA8 ALA A 171 ASP A 192 1 22 HELIX 9 AA9 VAL A 193 ASN A 198 1 6 HELIX 10 AB1 PRO A 199 GLN A 213 1 15 HELIX 11 AB2 SER A 225 ILE A 237 1 13 HELIX 12 AB3 ASP A 240 GLN A 261 1 22 HELIX 13 AB4 PRO B 47 GLU B 61 1 15 HELIX 14 AB5 ASP B 96 LYS B 103 1 8 HELIX 15 AB6 PRO B 110 ASN B 131 1 22 HELIX 16 AB7 ALA B 179 LEU B 184 1 6 HELIX 17 AB8 PRO B 191 ARG B 207 1 17 HELIX 18 AB9 SER B 215 GLY B 228 1 14 HELIX 19 AC1 PRO B 242 PHE B 246 5 5 HELIX 20 AC2 PRO B 253 VAL B 257 5 5 HELIX 21 AC3 GLU B 262 LEU B 273 1 12 HELIX 22 AC4 SER B 282 HIS B 289 1 8 HELIX 23 AC5 ASP C 26 GLU C 47 1 22 SHEET 1 AA1 4 VAL B 20 LYS B 22 0 SHEET 2 AA1 4 VAL B 32 VAL B 39 -1 O LEU B 34 N TYR B 21 SHEET 3 AA1 4 ILE B 84 GLU B 91 -1 O ILE B 84 N VAL B 39 SHEET 4 AA1 4 LEU B 71 THR B 77 -1 N THR B 77 O LYS B 85 SHEET 1 AA2 2 ILE B 143 VAL B 145 0 SHEET 2 AA2 2 VAL B 151 LEU B 153 -1 O LYS B 152 N LEU B 144 CRYST1 62.620 67.980 185.360 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015969 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005395 0.00000