HEADER SUGAR BINDING PROTEIN 07-JUN-19 6P8I TITLE N-TERMINAL 5 DOMAINS OF IGFIIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL 5 DOMAINS; COMPND 5 SYNONYM: M6PR,300 KDA MANNOSE 6-PHOSPHATE RECEPTOR,MPR 300,INSULIN- COMPND 6 LIKE GROWTH FACTOR 2 RECEPTOR,INSULIN-LIKE GROWTH FACTOR II RECEPTOR, COMPND 7 IGF-II RECEPTOR,M6P/IGF2 RECEPTOR,M6P/IGF2R; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGF2R, MPRI; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS LECTIN, RECEPTOR, MANNOSE-6-PHOSPHATE, PROTEIN TRANSPORT, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.J.OLSON,N.M.DAHMS,J.-J.P.KIM REVDAT 6 06-NOV-24 6P8I 1 REMARK REVDAT 5 11-OCT-23 6P8I 1 REMARK REVDAT 4 16-MAR-22 6P8I 1 REMARK REVDAT 3 30-SEP-20 6P8I 1 JRNL HETSYN LINK REVDAT 2 29-JUL-20 6P8I 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 24-JUN-20 6P8I 0 JRNL AUTH L.J.OLSON,S.K.MISRA,M.ISHIHARA,K.P.BATTAILE,O.C.GRANT, JRNL AUTH 2 A.SOOD,R.J.WOODS,J.P.KIM,M.TIEMEYER,G.REN,J.S.SHARP, JRNL AUTH 3 N.M.DAHMS JRNL TITL ALLOSTERIC REGULATION OF LYSOSOMAL ENZYME RECOGNITION BY THE JRNL TITL 2 CATION-INDEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR. JRNL REF COMMUN BIOL V. 3 498 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 32908216 JRNL DOI 10.1038/S42003-020-01211-W REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 48915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.450 REMARK 3 FREE R VALUE TEST SET COUNT : 3646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9700 - 7.5300 0.97 1803 131 0.2148 0.2329 REMARK 3 2 7.5200 - 5.9800 0.97 1808 138 0.2268 0.3107 REMARK 3 3 5.9700 - 5.2200 0.97 1786 151 0.1995 0.2339 REMARK 3 4 5.2200 - 4.7500 0.97 1797 147 0.1657 0.2274 REMARK 3 5 4.7500 - 4.4100 0.96 1791 137 0.1747 0.2293 REMARK 3 6 4.4100 - 4.1500 0.97 1795 137 0.1885 0.2381 REMARK 3 7 4.1500 - 3.9400 0.96 1734 156 0.2023 0.2827 REMARK 3 8 3.9400 - 3.7700 0.96 1816 153 0.2168 0.2602 REMARK 3 9 3.7700 - 3.6200 0.96 1744 138 0.2268 0.2919 REMARK 3 10 3.6200 - 3.5000 0.96 1787 144 0.2348 0.3245 REMARK 3 11 3.5000 - 3.3900 0.96 1766 139 0.2298 0.3299 REMARK 3 12 3.3900 - 3.2900 0.96 1792 142 0.2447 0.3191 REMARK 3 13 3.2900 - 3.2000 0.96 1754 140 0.2563 0.2999 REMARK 3 14 3.2000 - 3.1300 0.95 1783 159 0.2474 0.3145 REMARK 3 15 3.1300 - 3.0600 0.96 1756 139 0.2599 0.3310 REMARK 3 16 3.0600 - 2.9900 0.95 1731 134 0.2560 0.3087 REMARK 3 17 2.9900 - 2.9300 0.94 1770 151 0.2565 0.2921 REMARK 3 18 2.9300 - 2.8800 0.94 1695 135 0.2812 0.2881 REMARK 3 19 2.8800 - 2.8200 0.95 1727 165 0.2818 0.3665 REMARK 3 20 2.8200 - 2.7800 0.94 1781 116 0.2986 0.3834 REMARK 3 21 2.7800 - 2.7300 0.93 1734 146 0.2908 0.3594 REMARK 3 22 2.7300 - 2.6900 0.93 1715 140 0.3000 0.3243 REMARK 3 23 2.6900 - 2.6500 0.92 1686 141 0.3196 0.3449 REMARK 3 24 2.6500 - 2.6100 0.90 1708 132 0.3066 0.3640 REMARK 3 25 2.6100 - 2.5800 0.91 1666 147 0.3104 0.3466 REMARK 3 26 2.5800 - 2.5400 0.73 1344 88 0.3142 0.3895 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.412 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5377 REMARK 3 ANGLE : 1.106 7278 REMARK 3 CHIRALITY : 0.060 811 REMARK 3 PLANARITY : 0.005 936 REMARK 3 DIHEDRAL : 9.268 752 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48916 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 1Q25, REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM AMMONIUM CITRATE DIBASIC, 20% REMARK 280 PEG 3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.11400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 GLN A 84 REMARK 465 GLN A 85 REMARK 465 GLY A 86 REMARK 465 THR A 87 REMARK 465 GLY A 297 REMARK 465 GLU A 298 REMARK 465 GLN A 299 REMARK 465 GLN A 300 REMARK 465 SER A 312 REMARK 465 GLY A 313 REMARK 465 GLY A 314 REMARK 465 SER A 315 REMARK 465 ILE A 336 REMARK 465 GLN A 337 REMARK 465 PHE A 338 REMARK 465 CYS A 339 REMARK 465 ASN A 340 REMARK 465 SER A 352 REMARK 465 ASP A 353 REMARK 465 ASP A 468 REMARK 465 GLY A 469 REMARK 465 SER A 470 REMARK 465 GLN A 471 REMARK 465 THR A 472 REMARK 465 GLU A 473 REMARK 465 THR A 474 REMARK 465 GLU A 475 REMARK 465 PRO A 497 REMARK 465 GLU A 498 REMARK 465 ASP A 499 REMARK 465 ALA A 500 REMARK 465 ALA A 501 REMARK 465 VAL A 502 REMARK 465 CYS A 503 REMARK 465 ALA A 504 REMARK 465 VAL A 505 REMARK 465 ASP A 506 REMARK 465 LYS A 507 REMARK 465 ASN A 508 REMARK 465 GLY A 509 REMARK 465 SER A 510 REMARK 465 LYS A 511 REMARK 465 GLY A 534 REMARK 465 ASP A 535 REMARK 465 ASP A 536 REMARK 465 CYS A 537 REMARK 465 GLY A 538 REMARK 465 HIS A 539 REMARK 465 GLY A 540 REMARK 465 LYS A 541 REMARK 465 LYS A 542 REMARK 465 ILE A 543 REMARK 465 GLY A 566 REMARK 465 GLU A 567 REMARK 465 GLY A 568 REMARK 465 GLY A 569 REMARK 465 LEU A 730 REMARK 465 VAL A 731 REMARK 465 PRO A 732 REMARK 465 LEU A 733 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 THR A 334 OG1 CG2 REMARK 470 GLU A 335 CG CD OE1 OE2 REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 LYS A 342 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C4 NAG B 1 C1 NAG B 2 2.11 REMARK 500 O VAL A 302 O HOH A 901 2.17 REMARK 500 OG SER A 255 N ARG A 258 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 90 CD1 ILE A 318 2655 1.70 REMARK 500 OG SER A 597 OD2 ASP A 640 2444 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 28 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 LYS A 236 CD - CE - NZ ANGL. DEV. = -21.5 DEGREES REMARK 500 GLU A 728 OE1 - CD - OE2 ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 66.10 62.61 REMARK 500 THR A 55 93.98 67.39 REMARK 500 ARG A 56 83.51 -66.41 REMARK 500 ARG A 71 -119.85 48.95 REMARK 500 CYS A 82 -61.97 -130.41 REMARK 500 HIS A 89 -56.06 78.95 REMARK 500 VAL A 109 -68.14 -102.62 REMARK 500 THR A 112 -167.70 -118.60 REMARK 500 LYS A 148 112.68 76.23 REMARK 500 ASP A 185 72.19 -162.06 REMARK 500 ALA A 192 1.82 -69.47 REMARK 500 GLN A 206 -53.84 -150.74 REMARK 500 ALA A 207 115.54 65.25 REMARK 500 ARG A 214 -81.86 -136.93 REMARK 500 LYS A 222 -9.11 76.65 REMARK 500 ASP A 223 -26.96 -158.97 REMARK 500 ARG A 231 -55.38 -125.10 REMARK 500 GLU A 232 -87.36 61.84 REMARK 500 ALA A 234 -56.02 -148.13 REMARK 500 LEU A 237 40.96 -81.69 REMARK 500 ASP A 238 -68.98 -27.15 REMARK 500 ASP A 241 70.70 27.57 REMARK 500 ALA A 267 142.95 -172.30 REMARK 500 LYS A 268 27.74 -160.07 REMARK 500 ALA A 310 76.94 -59.78 REMARK 500 LYS A 322 -70.91 -44.58 REMARK 500 CYS A 331 -12.63 80.31 REMARK 500 THR A 334 74.80 59.99 REMARK 500 LYS A 342 -156.35 -70.18 REMARK 500 GLN A 343 72.51 48.11 REMARK 500 ALA A 344 103.57 -162.12 REMARK 500 HIS A 364 95.16 -58.99 REMARK 500 ASN A 365 102.12 60.95 REMARK 500 THR A 402 47.26 -105.18 REMARK 500 ASP A 406 74.83 16.69 REMARK 500 GLU A 436 53.64 -173.79 REMARK 500 CYS A 440 38.47 -99.85 REMARK 500 ASP A 444 87.77 -156.01 REMARK 500 GLU A 461 158.82 -47.03 REMARK 500 LYS A 477 -81.37 23.99 REMARK 500 LYS A 492 115.87 69.70 REMARK 500 ALA A 493 -79.70 -105.69 REMARK 500 LYS A 515 -119.90 65.91 REMARK 500 PHE A 516 38.52 97.22 REMARK 500 SER A 518 147.19 62.65 REMARK 500 GLU A 523 -157.83 -77.12 REMARK 500 LYS A 524 84.01 -56.30 REMARK 500 ASN A 526 -168.18 -127.79 REMARK 500 LEU A 562 -101.80 -12.09 REMARK 500 ARG A 563 -68.06 65.37 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 40 GLN A 41 -149.15 REMARK 500 LYS A 435 GLU A 436 145.65 REMARK 500 GLU A 459 PRO A 460 147.66 REMARK 500 REMARK 500 REMARK: NULL DBREF 6P8I A 1 728 UNP P11717 MPRI_HUMAN 36 763 SEQADV 6P8I ALA A -1 UNP P11717 EXPRESSION TAG SEQADV 6P8I ALA A 0 UNP P11717 EXPRESSION TAG SEQADV 6P8I ALA A 729 UNP P11717 EXPRESSION TAG SEQADV 6P8I LEU A 730 UNP P11717 EXPRESSION TAG SEQADV 6P8I VAL A 731 UNP P11717 EXPRESSION TAG SEQADV 6P8I PRO A 732 UNP P11717 EXPRESSION TAG SEQADV 6P8I LEU A 733 UNP P11717 EXPRESSION TAG SEQRES 1 A 735 ALA ALA GLY SER THR GLN ALA GLN ALA ALA PRO PHE PRO SEQRES 2 A 735 GLU LEU CYS SER TYR THR TRP GLU ALA VAL ASP THR LYS SEQRES 3 A 735 ASN ASN VAL LEU TYR LYS ILE ASN ILE CYS GLY SER VAL SEQRES 4 A 735 ASP ILE VAL GLN CYS GLY PRO SER SER ALA VAL CYS MET SEQRES 5 A 735 HIS ASP LEU LYS THR ARG THR TYR HIS SER VAL GLY ASP SEQRES 6 A 735 SER VAL LEU ARG SER ALA THR ARG SER LEU LEU GLU PHE SEQRES 7 A 735 ASN THR THR VAL SER CYS ASP GLN GLN GLY THR ASN HIS SEQRES 8 A 735 ARG VAL GLN SER SER ILE ALA PHE LEU CYS GLY LYS THR SEQRES 9 A 735 LEU GLY THR PRO GLU PHE VAL THR ALA THR GLU CYS VAL SEQRES 10 A 735 HIS TYR PHE GLU TRP ARG THR THR ALA ALA CYS LYS LYS SEQRES 11 A 735 ASP ILE PHE LYS ALA ASN LYS GLU VAL PRO CYS TYR VAL SEQRES 12 A 735 PHE ASP GLU GLU LEU ARG LYS HIS ASP LEU ASN PRO LEU SEQRES 13 A 735 ILE LYS LEU SER GLY ALA TYR LEU VAL ASP ASP SER ASP SEQRES 14 A 735 PRO ASP THR SER LEU PHE ILE ASN VAL CYS ARG ASP ILE SEQRES 15 A 735 ASP THR LEU ARG ASP PRO GLY SER GLN LEU ARG ALA CYS SEQRES 16 A 735 PRO PRO GLY THR ALA ALA CYS LEU VAL ARG GLY HIS GLN SEQRES 17 A 735 ALA PHE ASP VAL GLY GLN PRO ARG ASP GLY LEU LYS LEU SEQRES 18 A 735 VAL ARG LYS ASP ARG LEU VAL LEU SER TYR VAL ARG GLU SEQRES 19 A 735 GLU ALA GLY LYS LEU ASP PHE CYS ASP GLY HIS SER PRO SEQRES 20 A 735 ALA VAL THR ILE THR PHE VAL CYS PRO SER GLU ARG ARG SEQRES 21 A 735 GLU GLY THR ILE PRO LYS LEU THR ALA LYS SER ASN CYS SEQRES 22 A 735 ARG TYR GLU ILE GLU TRP ILE THR GLU TYR ALA CYS HIS SEQRES 23 A 735 ARG ASP TYR LEU GLU SER LYS THR CYS SER LEU SER GLY SEQRES 24 A 735 GLU GLN GLN ASP VAL SER ILE ASP LEU THR PRO LEU ALA SEQRES 25 A 735 GLN SER GLY GLY SER SER TYR ILE SER ASP GLY LYS GLU SEQRES 26 A 735 TYR LEU PHE TYR LEU ASN VAL CYS GLY GLU THR GLU ILE SEQRES 27 A 735 GLN PHE CYS ASN LYS LYS GLN ALA ALA VAL CYS GLN VAL SEQRES 28 A 735 LYS LYS SER ASP THR SER GLN VAL LYS ALA ALA GLY ARG SEQRES 29 A 735 TYR HIS ASN GLN THR LEU ARG TYR SER ASP GLY ASP LEU SEQRES 30 A 735 THR LEU ILE TYR PHE GLY GLY ASP GLU CYS SER SER GLY SEQRES 31 A 735 PHE GLN ARG MET SER VAL ILE ASN PHE GLU CYS ASN LYS SEQRES 32 A 735 THR ALA GLY ASN ASP GLY LYS GLY THR PRO VAL PHE THR SEQRES 33 A 735 GLY GLU VAL ASP CYS THR TYR PHE PHE THR TRP ASP THR SEQRES 34 A 735 GLU TYR ALA CYS VAL LYS GLU LYS GLU ASP LEU LEU CYS SEQRES 35 A 735 GLY ALA THR ASP GLY LYS LYS ARG TYR ASP LEU SER ALA SEQRES 36 A 735 LEU VAL ARG HIS ALA GLU PRO GLU GLN ASN TRP GLU ALA SEQRES 37 A 735 VAL ASP GLY SER GLN THR GLU THR GLU LYS LYS HIS PHE SEQRES 38 A 735 PHE ILE ASN ILE CYS HIS ARG VAL LEU GLN GLU GLY LYS SEQRES 39 A 735 ALA ARG GLY CYS PRO GLU ASP ALA ALA VAL CYS ALA VAL SEQRES 40 A 735 ASP LYS ASN GLY SER LYS ASN LEU GLY LYS PHE ILE SER SEQRES 41 A 735 SER PRO MET LYS GLU LYS GLY ASN ILE GLN LEU SER TYR SEQRES 42 A 735 SER ASP GLY ASP ASP CYS GLY HIS GLY LYS LYS ILE LYS SEQRES 43 A 735 THR ASN ILE THR LEU VAL CYS LYS PRO GLY ASP LEU GLU SEQRES 44 A 735 SER ALA PRO VAL LEU ARG THR SER GLY GLU GLY GLY CYS SEQRES 45 A 735 PHE TYR GLU PHE GLU TRP HIS THR ALA ALA ALA CYS VAL SEQRES 46 A 735 LEU SER LYS THR GLU GLY GLU ASN CYS THR VAL PHE ASP SEQRES 47 A 735 SER GLN ALA GLY PHE SER PHE ASP LEU SER PRO LEU THR SEQRES 48 A 735 LYS LYS ASN GLY ALA TYR LYS VAL GLU THR LYS LYS TYR SEQRES 49 A 735 ASP PHE TYR ILE ASN VAL CYS GLY PRO VAL SER VAL SER SEQRES 50 A 735 PRO CYS GLN PRO ASP SER GLY ALA CYS GLN VAL ALA LYS SEQRES 51 A 735 SER ASP GLU LYS THR TRP ASN LEU GLY LEU SER ASN ALA SEQRES 52 A 735 LYS LEU SER TYR TYR ASP GLY MET ILE GLN LEU ASN TYR SEQRES 53 A 735 ARG GLY GLY THR PRO TYR ASN ASN GLU ARG HIS THR PRO SEQRES 54 A 735 ARG ALA THR LEU ILE THR PHE LEU CYS ASP ARG ASP ALA SEQRES 55 A 735 GLY VAL GLY PHE PRO GLU TYR GLN GLU GLU ASP ASN SER SEQRES 56 A 735 THR TYR ASN PHE ARG TRP TYR THR SER TYR ALA CYS PRO SEQRES 57 A 735 GLU GLU ALA LEU VAL PRO LEU HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN C6 H12 O6 FORMUL 3 HOH *28(H2 O) HELIX 1 AA1 PHE A 10 CYS A 14 5 5 HELIX 2 AA2 THR A 123 CYS A 126 5 4 HELIX 3 AA3 LYS A 128 LYS A 132 5 5 HELIX 4 AA4 ASN A 152 ILE A 155 5 4 HELIX 5 AA5 SER A 188 CYS A 193 5 6 HELIX 6 AA6 LYS A 268 ASN A 270 5 3 HELIX 7 AA7 GLU A 280 CYS A 283 5 4 HELIX 8 AA8 THR A 307 ALA A 310 5 4 HELIX 9 AA9 GLU A 428 CYS A 431 5 4 HELIX 10 AB1 ALA A 579 CYS A 582 5 4 HELIX 11 AB2 SER A 606 THR A 609 5 4 HELIX 12 AB3 SER A 722 CYS A 725 5 4 SHEET 1 AA1 4 TRP A 18 ASP A 22 0 SHEET 2 AA1 4 VAL A 27 ILE A 31 -1 O TYR A 29 N ALA A 20 SHEET 3 AA1 4 VAL A 48 ASP A 52 -1 O CYS A 49 N LYS A 30 SHEET 4 AA1 4 THR A 57 SER A 60 -1 O HIS A 59 N MET A 50 SHEET 1 AA2 5 ARG A 67 THR A 70 0 SHEET 2 AA2 5 LEU A 73 SER A 81 -1 O GLU A 75 N SER A 68 SHEET 3 AA2 5 ARG A 90 CYS A 99 -1 O SER A 93 N PHE A 76 SHEET 4 AA2 5 VAL A 115 THR A 122 1 O HIS A 116 N SER A 94 SHEET 5 AA2 5 GLU A 107 ALA A 111 -1 N GLU A 107 O GLU A 119 SHEET 1 AA3 2 TYR A 140 VAL A 141 0 SHEET 2 AA3 2 HIS A 149 ASP A 150 -1 O HIS A 149 N VAL A 141 SHEET 1 AA4 4 TYR A 161 LEU A 162 0 SHEET 2 AA4 4 THR A 170 ILE A 174 -1 O ILE A 174 N TYR A 161 SHEET 3 AA4 4 ALA A 199 ARG A 203 -1 O CYS A 200 N PHE A 173 SHEET 4 AA4 4 PHE A 208 ASP A 209 -1 O PHE A 208 N LEU A 201 SHEET 1 AA5 5 LYS A 218 LEU A 219 0 SHEET 2 AA5 5 LEU A 225 VAL A 230 -1 O VAL A 226 N LYS A 218 SHEET 3 AA5 5 ALA A 246 VAL A 252 -1 O PHE A 251 N LEU A 225 SHEET 4 AA5 5 ARG A 272 ILE A 278 1 O ILE A 275 N THR A 250 SHEET 5 AA5 5 LYS A 264 ALA A 267 -1 N LYS A 264 O GLU A 276 SHEET 1 AA6 6 TYR A 287 SER A 290 0 SHEET 2 AA6 6 GLN A 366 SER A 371 -1 O TYR A 370 N LEU A 288 SHEET 3 AA6 6 ASP A 374 TYR A 379 -1 O THR A 376 N ARG A 369 SHEET 4 AA6 6 MET A 392 CYS A 399 -1 O ILE A 395 N LEU A 377 SHEET 5 AA6 6 THR A 420 THR A 427 1 O PHE A 423 N ASN A 396 SHEET 6 AA6 6 VAL A 412 VAL A 417 -1 N THR A 414 O PHE A 422 SHEET 1 AA7 2 SER A 294 LEU A 295 0 SHEET 2 AA7 2 ILE A 304 ASP A 305 -1 O ILE A 304 N LEU A 295 SHEET 1 AA8 4 TYR A 317 ASP A 320 0 SHEET 2 AA8 4 TYR A 324 LEU A 328 -1 O LEU A 328 N TYR A 317 SHEET 3 AA8 4 VAL A 346 LYS A 350 -1 O VAL A 349 N LEU A 325 SHEET 4 AA8 4 VAL A 357 GLY A 361 -1 O LYS A 358 N GLN A 348 SHEET 1 AA9 2 GLY A 441 ASP A 444 0 SHEET 2 AA9 2 LYS A 447 ASP A 450 -1 O TYR A 449 N ALA A 442 SHEET 1 AB1 2 TRP A 464 GLU A 465 0 SHEET 2 AB1 2 PHE A 480 ILE A 481 -1 O ILE A 481 N TRP A 464 SHEET 1 AB2 5 MET A 521 LYS A 522 0 SHEET 2 AB2 5 ILE A 527 TYR A 531 -1 O GLN A 528 N MET A 521 SHEET 3 AB2 5 THR A 545 CYS A 551 -1 O THR A 545 N TYR A 531 SHEET 4 AB2 5 TYR A 572 THR A 578 1 O TRP A 576 N VAL A 550 SHEET 5 AB2 5 VAL A 561 THR A 564 -1 N VAL A 561 O GLU A 575 SHEET 1 AB3 6 THR A 587 GLY A 589 0 SHEET 2 AB3 6 LEU A 663 TYR A 666 -1 O TYR A 665 N THR A 587 SHEET 3 AB3 6 MET A 669 TYR A 674 -1 O MET A 669 N TYR A 666 SHEET 4 AB3 6 THR A 690 CYS A 696 -1 O PHE A 694 N ILE A 670 SHEET 5 AB3 6 TYR A 715 THR A 721 1 O PHE A 717 N THR A 693 SHEET 6 AB3 6 PRO A 705 GLN A 708 -1 N GLN A 708 O ASN A 716 SHEET 1 AB4 2 THR A 593 PHE A 595 0 SHEET 2 AB4 2 SER A 602 ASP A 604 -1 O PHE A 603 N VAL A 594 SHEET 1 AB5 4 TYR A 615 GLU A 618 0 SHEET 2 AB5 4 TYR A 622 ILE A 626 -1 O PHE A 624 N VAL A 617 SHEET 3 AB5 4 SER A 641 ALA A 647 -1 O VAL A 646 N ASP A 623 SHEET 4 AB5 4 THR A 653 LEU A 658 -1 O TRP A 654 N GLN A 645 SSBOND 1 CYS A 42 CYS A 49 1555 1555 2.04 SSBOND 2 CYS A 82 CYS A 114 1555 1555 2.04 SSBOND 3 CYS A 99 CYS A 126 1555 1555 2.07 SSBOND 4 CYS A 139 CYS A 177 1555 1555 2.04 SSBOND 5 CYS A 193 CYS A 200 1555 1555 2.02 SSBOND 6 CYS A 240 CYS A 271 1555 1555 2.04 SSBOND 7 CYS A 253 CYS A 283 1555 1555 2.07 SSBOND 8 CYS A 293 CYS A 331 1555 1555 2.03 SSBOND 9 CYS A 399 CYS A 431 1555 1555 1.83 SSBOND 10 CYS A 440 CYS A 484 1555 1555 2.06 SSBOND 11 CYS A 551 CYS A 582 1555 1555 2.06 SSBOND 12 CYS A 592 CYS A 629 1555 1555 2.22 SSBOND 13 CYS A 637 CYS A 644 1555 1555 2.05 SSBOND 14 CYS A 696 CYS A 725 1555 1555 2.09 LINK ND2 ASN A 591 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.49 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.47 CRYST1 50.788 66.228 123.070 90.00 99.18 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019690 0.000000 0.003182 0.00000 SCALE2 0.000000 0.015099 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008231 0.00000