HEADER IMMUNE SYSTEM 07-JUN-19 6P8M TITLE CRYSTAL STRUCTURE OF ANTIBODY P-P3B3 A60C HEAVY CHAIN IN COMPLEX WITH TITLE 2 426C HIV-1 GP120 CORE G459C COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP120; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: P-P3B3 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: P-P3B3 LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S GNTI(-/-); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S GNTI(-/-); SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 19 ORGANISM_COMMON: MOUSE; SOURCE 20 ORGANISM_TAXID: 10090; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S GNTI(-/-) KEYWDS ANTIBODY, 426C, IMMUNIZATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.WEIDLE,M.PANCERA REVDAT 5 11-OCT-23 6P8M 1 HETSYN LINK REVDAT 4 29-JUL-20 6P8M 1 COMPND SOURCE REMARK DBREF REVDAT 4 2 1 SEQADV HETNAM LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 08-JAN-20 6P8M 1 JRNL REVDAT 2 18-DEC-19 6P8M 1 REMARK REVDAT 1 20-NOV-19 6P8M 0 JRNL AUTH K.R.PARKS,A.J.MACCAMY,J.TRICHKA,M.GRAY,C.WEIDLE,A.J.BORST, JRNL AUTH 2 A.KHECHADURI,B.TAKUSHI,P.AGRAWAL,J.GUENAGA,R.T.WYATT, JRNL AUTH 3 R.COLER,M.SEAMAN,C.LABRANCHE,D.C.MONTEFIORI,D.VEESLER, JRNL AUTH 4 M.PANCERA,A.MCGUIRE,L.STAMATATOS JRNL TITL OVERCOMING STERIC RESTRICTIONS OF VRC01 HIV-1 NEUTRALIZING JRNL TITL 2 ANTIBODIES THROUGH IMMUNIZATION. JRNL REF CELL REP V. 29 3060 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31801073 JRNL DOI 10.1016/J.CELREP.2019.10.071 REMARK 2 REMARK 2 RESOLUTION. 3.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.7 REMARK 3 NUMBER OF REFLECTIONS : 11541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0998 - 5.7038 0.84 3476 187 0.2379 0.2678 REMARK 3 2 5.7038 - 4.5282 0.81 3229 175 0.2214 0.2612 REMARK 3 3 4.5282 - 3.9561 0.69 2725 142 0.2256 0.2674 REMARK 3 4 3.9561 - 3.5945 0.39 1540 67 0.2586 0.2981 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5980 REMARK 3 ANGLE : 0.737 8165 REMARK 3 CHIRALITY : 0.048 968 REMARK 3 PLANARITY : 0.004 1036 REMARK 3 DIHEDRAL : 6.640 3432 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6P8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000241907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11547 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.075 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6MFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.67% PEG 4000, 0.67M AMMONIUM CITRATE REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 73.39800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 88.37750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 73.39800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 88.37750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 73.39800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.37750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 73.39800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 88.37750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA C1409 LIES ON A SPECIAL POSITION. REMARK 375 NA NA C1410 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL C 44 REMARK 465 TRP C 45 REMARK 465 LYS C 46 REMARK 465 ASN C 318 REMARK 465 GLY C 319 REMARK 465 GLY C 320 REMARK 465 SER C 321 REMARK 465 GLY C 322 REMARK 465 SER C 323 REMARK 465 GLY C 324 REMARK 465 GLY C 325 REMARK 465 LYS C 492 REMARK 465 PRO C 493 REMARK 465 LEU C 494 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 ASP L 1 REMARK 465 ILE L 2 REMARK 465 VAL L 3 REMARK 465 SER L 27A REMARK 465 LEU L 27B REMARK 465 LEU L 27C REMARK 465 TYR L 27D REMARK 465 SER L 27E REMARK 465 SER L 27F REMARK 465 ASN L 27G REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 47 CG CD OE1 OE2 REMARK 470 LYS C 49 CG CD CE NZ REMARK 470 LYS C 63 CG CD CE NZ REMARK 470 GLU C 87 CG CD OE1 OE2 REMARK 470 LYS C 97 CG CD CE NZ REMARK 470 LYS C 231 CG CD CE NZ REMARK 470 LEU C 261 CG CD1 CD2 REMARK 470 LEU C 277 CG CD1 CD2 REMARK 470 ARG C 278 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 327 CG1 CG2 CD1 REMARK 470 ARG C 337 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 341 CG CD OE1 OE2 REMARK 470 ASN C 344 CG OD1 ND2 REMARK 470 LYS C 348 CG CD CE NZ REMARK 470 ILE C 395 CG1 CG2 CD1 REMARK 470 SER C 447 OG REMARK 470 TYR H 100 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER H 115 OG REMARK 470 LEU L 11 CG CD1 CD2 REMARK 470 GLU L 17 CG CD OE1 OE2 REMARK 470 ASN L 31 CG OD1 ND2 REMARK 470 SER L 43 OG REMARK 470 LYS L 45 CG CD CE NZ REMARK 470 ILE L 48 CG1 CG2 CD1 REMARK 470 SER L 52 OG REMARK 470 SER L 76 OG REMARK 470 SER L 77 OG REMARK 470 LYS L 79 CG CD CE NZ REMARK 470 GLU L 81 CG CD OE1 OE2 REMARK 470 LEU L 83 CG CD1 CD2 REMARK 470 LYS L 103 CG CD CE NZ REMARK 470 LEU L 104 CG CD1 CD2 REMARK 470 GLU L 105 CG CD OE1 OE2 REMARK 470 LYS L 107 CG CD CE NZ REMARK 470 PHE L 118 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU L 123 CG CD OE1 OE2 REMARK 470 LYS L 126 CG CD CE NZ REMARK 470 VAL L 132 CG1 CG2 REMARK 470 VAL L 133 CG1 CG2 REMARK 470 ASN L 137 CG OD1 ND2 REMARK 470 ARG L 142 CG CD NE CZ NH1 NH2 REMARK 470 VAL L 146 CG1 CG2 REMARK 470 LYS L 149 CG CD CE NZ REMARK 470 ASP L 151 CG OD1 OD2 REMARK 470 GLU L 161 CG CD OE1 OE2 REMARK 470 GLU L 165 CG CD OE1 OE2 REMARK 470 GLN L 166 CG CD OE1 NE2 REMARK 470 LYS L 169 CG CD CE NZ REMARK 470 LEU L 175 CG CD1 CD2 REMARK 470 LYS L 183 CG CD CE NZ REMARK 470 LYS L 188 CG CD CE NZ REMARK 470 LYS L 207 CG CD CE NZ REMARK 470 PHE L 209 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR L 32 HE22 GLN L 90 1.55 REMARK 500 O ASN C 478 HG SER C 481 1.58 REMARK 500 HD1 HIS C 249 OH TYR C 486 1.59 REMARK 500 OD1 ASN C 392 H THR C 394 1.59 REMARK 500 H LYS C 227 O SER C 243 1.60 REMARK 500 O3 NAG A 1 O5 NAG A 2 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 57 37.19 -88.69 REMARK 500 LEU C 116 68.36 -110.10 REMARK 500 ASP C 211 112.51 -163.22 REMARK 500 ASN C 241 59.42 -102.04 REMARK 500 GLN C 258 -60.29 64.14 REMARK 500 GLU C 268 -90.31 -111.49 REMARK 500 ASN C 276 108.14 -167.01 REMARK 500 PHE C 391 58.23 -94.00 REMARK 500 CYS C 459 160.22 70.97 REMARK 500 SER C 471 -151.61 -149.28 REMARK 500 LYS C 487 138.58 -170.53 REMARK 500 GLN H 43 -168.00 -124.33 REMARK 500 VAL H 142 97.42 -68.47 REMARK 500 ASP H 144 79.82 55.93 REMARK 500 PRO H 147 -149.16 -81.11 REMARK 500 THR H 160 -36.18 -130.79 REMARK 500 ALA L 51 -73.35 63.28 REMARK 500 SER L 52 -133.49 -89.50 REMARK 500 THR L 53 78.60 52.41 REMARK 500 SER L 77 80.47 47.76 REMARK 500 ALA L 84 -179.74 179.13 REMARK 500 TYR L 91 -103.20 56.95 REMARK 500 ASN L 138 82.30 55.32 REMARK 500 ASP L 151 -99.94 55.04 REMARK 500 ASN L 158 48.03 -149.80 REMARK 500 LYS L 190 -30.80 -147.52 REMARK 500 ASN L 210 78.47 -153.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 6P8M C 44 494 PDB 6P8M 6P8M 44 494 DBREF 6P8M H 1 225 PDB 6P8M 6P8M 1 225 DBREF 6P8M L 1 214 PDB 6P8M 6P8M 1 214 SEQRES 1 C 347 VAL TRP LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER SEQRES 2 C 347 ASP ALA LYS ALA TYR GLU LYS GLU CYS HIS ASN VAL TRP SEQRES 3 C 347 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 C 347 GLU VAL VAL LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 C 347 TRP LYS ASN ASP MET VAL ASP GLN MET GLN GLU ASP VAL SEQRES 6 C 347 ILE SER ILE TRP ASP GLN CYS LEU LYS PRO CYS VAL LYS SEQRES 7 C 347 LEU THR ASN THR SER THR LEU THR GLN ALA CYS PRO LYS SEQRES 8 C 347 VAL THR PHE ASP PRO ILE PRO ILE HIS TYR CYS ALA PRO SEQRES 9 C 347 ALA GLY TYR ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 C 347 ASN GLY LYS GLY PRO CYS ASN ASN VAL SER THR VAL GLN SEQRES 11 C 347 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 C 347 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE VAL ILE SEQRES 13 C 347 ARG SER LYS ASN LEU ARG ASP ASN ALA LYS ILE ILE ILE SEQRES 14 C 347 VAL GLN LEU ASN LYS SER VAL GLU ILE VAL CYS THR ARG SEQRES 15 C 347 PRO ASN ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 C 347 GLN ALA TYR CYS ASN ILE SER GLY ARG ASN TRP SER GLU SEQRES 17 C 347 ALA VAL ASN GLN VAL LYS LYS LYS LEU LYS GLU HIS PHE SEQRES 18 C 347 PRO HIS LYS ASN ILE SER PHE GLN SER SER SER GLY GLY SEQRES 19 C 347 ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS GLY GLY SEQRES 20 C 347 GLU PHE PHE TYR CYS ASN THR SER GLY LEU PHE ASN ASP SEQRES 21 C 347 THR ILE SER ASN ALA THR ILE MET LEU PRO CYS ARG ILE SEQRES 22 C 347 LYS GLN ILE ILE ASN MET TRP GLN GLU VAL GLY LYS ALA SEQRES 23 C 347 ILE TYR ALA PRO PRO ILE LYS GLY ASN ILE THR CYS LYS SEQRES 24 C 347 SER ASP ILE THR GLY LEU LEU LEU LEU ARG ASP GLY CYS SEQRES 25 C 347 ASP THR THR ASP ASN THR GLU ILE PHE ARG PRO SER GLY SEQRES 26 C 347 GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU TYR LYS SEQRES 27 C 347 TYR LYS VAL VAL GLU ILE LYS PRO LEU SEQRES 1 H 233 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 233 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 233 TYR THR PHE THR GLY TYR TYR ILE HIS TRP VAL ARG GLN SEQRES 4 H 233 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 H 233 PRO ASN ARG GLY GLY THR ASN TYR CYS GLN LYS PHE GLN SEQRES 6 H 233 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 233 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 233 ALA VAL TYR TYR CYS ALA ARG GLY ILE ASN SER ASP TYR SEQRES 9 H 233 THR TRP ASP PHE GLN HIS TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 233 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 233 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 233 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 233 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 233 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 233 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 233 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 233 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 H 233 LYS SER CYS ASP LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 216 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 L 216 SER VAL GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 L 216 GLN SER LEU LEU TYR SER SER ASN GLN LYS ASN TYR LEU SEQRES 4 L 216 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 L 216 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 216 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 216 LEU THR ILE SER SER VAL LYS ALA GLU ASP LEU ALA VAL SEQRES 8 L 216 TYR TYR CYS GLN GLN TYR GLU THR LEU GLY SER GLY THR SEQRES 9 L 216 LYS LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 216 LYS SER PHE ASN ARG GLY GLU CYS HET NAG A 1 27 HET NAG A 2 27 HET BMA A 3 20 HET MAN A 4 22 HET MAN A 5 21 HET NAG C1401 28 HET NH4 C1402 5 HET NH4 C1403 5 HET NH4 C1404 5 HET EDO C1405 10 HET EDO C1406 10 HET PEG C1407 17 HET NA C1408 1 HET NA C1409 1 HET NA C1410 1 HET CL C1411 1 HET NAG C1417 28 HET NAG C1418 28 HET NAG C1419 28 HET NAG C1420 28 HET NAG C1421 28 HET NAG C1422 27 HET NAG C1423 28 HET NAG C1424 28 HET PEG H 301 17 HET NA H 302 1 HET NH4 L 301 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM NH4 AMMONIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 NAG 11(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 2(C6 H12 O6) FORMUL 6 NH4 4(H4 N 1+) FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 PEG 2(C4 H10 O3) FORMUL 12 NA 4(NA 1+) FORMUL 15 CL CL 1- FORMUL 27 HOH *12(H2 O) HELIX 1 AA1 GLU C 64 ALA C 73 1 10 HELIX 2 AA2 ASN C 98 LEU C 116 1 19 HELIX 3 AA3 SER C 335 PHE C 354 1 20 HELIX 4 AA4 ASP C 368 THR C 372 1 5 HELIX 5 AA5 MET C 475 TYR C 484 1 10 HELIX 6 AA6 THR H 28 TYR H 32 5 5 HELIX 7 AA7 GLN H 61 GLN H 64 5 4 HELIX 8 AA8 THR H 73 ILE H 75 5 3 HELIX 9 AA9 ARG H 83 THR H 87 5 5 HELIX 10 AB1 SER H 187 LEU H 189 5 3 HELIX 11 AB2 LYS H 201 ASN H 204 5 4 HELIX 12 AB3 LYS L 79 LEU L 83 5 5 HELIX 13 AB4 SER L 121 LYS L 126 1 6 HELIX 14 AB5 LYS L 183 HIS L 189 1 7 SHEET 1 AA1 3 CYS C 74 PRO C 76 0 SHEET 2 AA1 3 PHE C 53 SER C 56 1 N CYS C 54 O VAL C 75 SHEET 3 AA1 3 HIS C 216 CYS C 218 -1 O CYS C 218 N PHE C 53 SHEET 1 AA2 4 VAL C 84 VAL C 85 0 SHEET 2 AA2 4 VAL C 242 VAL C 245 -1 O THR C 244 N VAL C 84 SHEET 3 AA2 4 TYR C 223 CYS C 228 -1 N LYS C 227 O SER C 243 SHEET 4 AA2 4 TYR C 486 GLU C 490 -1 O LYS C 487 N LEU C 226 SHEET 1 AA3 2 GLU C 91 ASN C 94 0 SHEET 2 AA3 2 LYS C 236 CYS C 239 -1 O CYS C 239 N GLU C 91 SHEET 1 AA4 4 SER C 199 THR C 202 0 SHEET 2 AA4 4 VAL C 120 THR C 123 -1 N THR C 123 O SER C 199 SHEET 3 AA4 4 LYS C 432 ILE C 434 -1 O ILE C 434 N VAL C 120 SHEET 4 AA4 4 ILE C 423 ASN C 425 -1 N ILE C 424 O ALA C 433 SHEET 1 AA5 5 LEU C 259 LEU C 261 0 SHEET 2 AA5 5 ILE C 443 ARG C 456 -1 O THR C 450 N LEU C 260 SHEET 3 AA5 5 ILE C 284 ARG C 298 -1 N VAL C 292 O ILE C 449 SHEET 4 AA5 5 THR C 465 PRO C 470 0 SHEET 5 AA5 5 ASN C 358 PHE C 361 1 N SER C 360 O GLU C 466 SHEET 1 AA6 7 VAL C 271 ARG C 273 0 SHEET 2 AA6 7 ILE C 284 ARG C 298 -1 O ILE C 285 N ARG C 273 SHEET 3 AA6 7 ILE C 443 ARG C 456 -1 O ILE C 449 N VAL C 292 SHEET 4 AA6 7 GLN C 329 ILE C 334 0 SHEET 5 AA6 7 ILE C 414 LYS C 421 -1 O ILE C 414 N ILE C 334 SHEET 6 AA6 7 GLU C 381 ASN C 386 -1 N ASN C 386 O PRO C 417 SHEET 7 AA6 7 THR C 373 CYS C 378 -1 N PHE C 376 O PHE C 383 SHEET 1 AA7 4 GLN H 3 GLN H 6 0 SHEET 2 AA7 4 SER H 17 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA7 4 THR H 77 SER H 82A-1 O MET H 80 N VAL H 20 SHEET 4 AA7 4 VAL H 67 ASP H 72 -1 N THR H 68 O GLU H 81 SHEET 1 AA8 6 GLU H 10 LYS H 12 0 SHEET 2 AA8 6 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AA8 6 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 107 SHEET 4 AA8 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA8 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA8 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA9 4 GLU H 10 LYS H 12 0 SHEET 2 AA9 4 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AA9 4 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 107 SHEET 4 AA9 4 HIS H 102 TRP H 103 -1 O HIS H 102 N ARG H 94 SHEET 1 AB1 4 PRO H 123 LEU H 124 0 SHEET 2 AB1 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AB1 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 138 SHEET 4 AB1 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB2 4 PRO H 123 LEU H 124 0 SHEET 2 AB2 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AB2 4 TYR H 176 PRO H 185 -1 O VAL H 182 N LEU H 138 SHEET 4 AB2 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB3 3 THR H 151 TRP H 154 0 SHEET 2 AB3 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB3 3 THR H 205 ARG H 210 -1 O LYS H 209 N CYS H 196 SHEET 1 AB4 4 SER L 5 SER L 7 0 SHEET 2 AB4 4 VAL L 19 LYS L 24 -1 O SER L 22 N SER L 7 SHEET 3 AB4 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AB4 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AB5 5 SER L 10 SER L 14 0 SHEET 2 AB5 5 THR L 102 LYS L 107 1 O LYS L 107 N VAL L 13 SHEET 3 AB5 5 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB5 5 ALA L 34 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AB5 5 LYS L 45 TYR L 49 -1 O LYS L 45 N GLN L 37 SHEET 1 AB6 4 SER L 10 SER L 14 0 SHEET 2 AB6 4 THR L 102 LYS L 107 1 O LYS L 107 N VAL L 13 SHEET 3 AB6 4 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB6 4 THR L 97 LEU L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB7 4 SER L 114 PHE L 118 0 SHEET 2 AB7 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB7 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB7 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB8 4 ALA L 153 LEU L 154 0 SHEET 2 AB8 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB8 4 TYR L 192 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB8 4 VAL L 205 PHE L 209 -1 O PHE L 209 N TYR L 192 SSBOND 1 CYS C 54 CYS C 74 1555 1555 2.04 SSBOND 2 CYS C 65 CYS C 115 1555 1555 2.03 SSBOND 3 CYS C 119 CYS C 205 1555 1555 2.03 SSBOND 4 CYS C 218 CYS C 247 1555 1555 2.03 SSBOND 5 CYS C 228 CYS C 239 1555 1555 2.03 SSBOND 6 CYS C 296 CYS C 332 1555 1555 2.03 SSBOND 7 CYS C 378 CYS C 445 1555 1555 2.03 SSBOND 8 CYS C 385 CYS C 418 1555 1555 2.03 SSBOND 9 CYS C 459 CYS H 60 1555 1555 2.03 SSBOND 10 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 11 CYS H 140 CYS H 196 1555 1555 2.08 SSBOND 12 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 13 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN C 124 C1 NAG C1417 1555 1555 1.44 LINK ND2 ASN C 230 C1 NAG C1418 1555 1555 1.43 LINK ND2 ASN C 241 C1 NAG C1419 1555 1555 1.45 LINK ND2 ASN C 262 C1 NAG A 1 1555 1555 1.43 LINK ND2 ASN C 289 C1 NAG C1420 1555 1555 1.44 LINK ND2 ASN C 338 C1 NAG C1421 1555 1555 1.43 LINK ND2 ASN C 358 C1 NAG C1422 1555 1555 1.44 LINK ND2 ASN C 386 C1 NAG C1423 1555 1555 1.44 LINK ND2 ASN C 392 C1 NAG C1424 1555 1555 1.43 LINK ND2 ASN C 397 C1 NAG C1401 1555 1555 1.45 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.43 LINK O3 BMA A 3 C1 MAN A 4 1555 1555 1.44 LINK O6 BMA A 3 C1 MAN A 5 1555 1555 1.45 CISPEP 1 PHE H 146 PRO H 147 0 0.68 CISPEP 2 SER L 7 PRO L 8 0 -3.31 CISPEP 3 TYR L 140 PRO L 141 0 4.52 CRYST1 146.796 176.755 108.573 90.00 90.00 90.00 C 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006812 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009210 0.00000