HEADER SIGNALING PROTEIN/INHIBITOR 08-JUN-19 6P8Y TITLE CRYSTAL STRUCTURE OF HUMAN KRAS G12C COVALENTLY BOUND TO AN TITLE 2 ACRYLOYLAZETIDINE ACETAMIDE INHIBITOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: VAR_006839 G12C; SOURCE 6 GENE: KRAS, KRAS2, RASK2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, GTPASE, SIGNALING PROTEIN, SIGNALING PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.MOHR REVDAT 3 13-NOV-24 6P8Y 1 SEQADV LINK REVDAT 2 02-OCT-19 6P8Y 1 JRNL REVDAT 1 28-AUG-19 6P8Y 0 JRNL AUTH Y.SHIN,J.W.JEONG,R.P.WURZ,P.ACHANTA,T.ARVEDSON, JRNL AUTH 2 M.D.BARTBERGER,I.D.G.CAMPUZANO,R.FUCINI,S.K.HANSEN, JRNL AUTH 3 J.INGERSOLL,J.S.IWIG,J.R.LIPFORD,V.MA,D.J.KOPECKY, JRNL AUTH 4 J.MCCARTER,T.SAN MIGUEL,C.MOHR,S.SABET,A.Y.SAIKI,A.SAWAYAMA, JRNL AUTH 5 S.SETHOFER,C.M.TEGLEY,L.P.VOLAK,K.YANG,B.A.LANMAN, JRNL AUTH 6 D.A.ERLANSON,V.J.CEE JRNL TITL DISCOVERY OFN-(1-ACRYLOYLAZETIDIN-3-YL)-2-(1H-INDOL-1-YL) JRNL TITL 2 ACETAMIDES AS COVALENT INHIBITORS OF KRASG12C. JRNL REF ACS MED.CHEM.LETT. V. 10 1302 2019 JRNL REFN ISSN 1948-5875 JRNL PMID 31531201 JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00258 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 11311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 574 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 804 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2571 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.60000 REMARK 3 B22 (A**2) : -2.76000 REMARK 3 B33 (A**2) : 5.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.499 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.314 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.361 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2762 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2530 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3727 ; 1.038 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5816 ; 0.879 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 4.208 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;37.441 ;24.453 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;16.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.380 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3037 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 594 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1292 ; 1.157 ; 5.105 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1291 ; 1.157 ; 5.105 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 2.073 ; 7.641 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1609 ; 2.073 ; 7.642 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1470 ; 1.038 ; 5.251 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1422 ; 1.024 ; 5.252 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2047 ; 1.814 ; 7.827 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3043 ; 3.989 ;40.337 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2972 ; 3.977 ;39.874 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 166 B 1 166 8825 0.15 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6P8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO V2.3.9, HKL-2000 V717 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK V2.3.9, HKL-2000 V717 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.19000 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51100 REMARK 200 FOR SHELL : 3.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 CITRATE PH5.6, 32% PEG4000, 0.005M MAGNESIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.02250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 LYS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 ASP A -4 REMARK 465 GLU A -3 REMARK 465 VAL A -2 REMARK 465 ASP A -1 REMARK 465 GLY A 0 REMARK 465 LYS A 167 REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 MET B -13 REMARK 465 LYS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 ASP B -4 REMARK 465 GLU B -3 REMARK 465 VAL B -2 REMARK 465 ASP B -1 REMARK 465 GLU B 31 REMARK 465 TYR B 32 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 TYR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 MET B 67 REMARK 465 ARG B 68 REMARK 465 ASP B 69 REMARK 465 LYS B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 59 11.55 -146.32 REMARK 500 LYS A 117 37.05 75.96 REMARK 500 ALA B 59 -145.36 -162.07 REMARK 500 LYS B 117 37.42 75.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 302 O2B 88.1 REMARK 620 3 HOH A 407 O 91.6 106.8 REMARK 620 4 HOH A 411 O 149.1 101.0 113.3 REMARK 620 5 HOH A 414 O 80.0 84.5 165.8 71.7 REMARK 620 6 HOH A 416 O 94.7 163.8 89.1 68.9 80.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 302 O1B 89.4 REMARK 620 3 HOH B 401 O 90.2 95.4 REMARK 620 4 HOH B 404 O 89.1 93.1 171.5 REMARK 620 5 HOH B 408 O 163.5 99.6 102.6 76.7 REMARK 620 6 HOH B 409 O 96.5 171.6 90.6 81.1 73.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O5Y A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide O5Y B 303 and CYS B REMARK 800 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6P8W RELATED DB: PDB REMARK 900 RELATED ID: 6P8X RELATED DB: PDB DBREF 6P8Y A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 6P8Y B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 6P8Y MET A -13 UNP P01116 EXPRESSION TAG SEQADV 6P8Y LYS A -12 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -11 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -10 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -9 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -8 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -7 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -6 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -5 UNP P01116 EXPRESSION TAG SEQADV 6P8Y ASP A -4 UNP P01116 EXPRESSION TAG SEQADV 6P8Y GLU A -3 UNP P01116 EXPRESSION TAG SEQADV 6P8Y VAL A -2 UNP P01116 EXPRESSION TAG SEQADV 6P8Y ASP A -1 UNP P01116 EXPRESSION TAG SEQADV 6P8Y GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 6P8Y CYS A 12 UNP P01116 GLY 12 VARIANT SEQADV 6P8Y SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 6P8Y LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 6P8Y SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 6P8Y MET B -13 UNP P01116 EXPRESSION TAG SEQADV 6P8Y LYS B -12 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -11 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -10 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -9 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -8 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -7 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -6 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -5 UNP P01116 EXPRESSION TAG SEQADV 6P8Y ASP B -4 UNP P01116 EXPRESSION TAG SEQADV 6P8Y GLU B -3 UNP P01116 EXPRESSION TAG SEQADV 6P8Y VAL B -2 UNP P01116 EXPRESSION TAG SEQADV 6P8Y ASP B -1 UNP P01116 EXPRESSION TAG SEQADV 6P8Y GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 6P8Y CYS B 12 UNP P01116 GLY 12 VARIANT SEQADV 6P8Y SER B 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 6P8Y LEU B 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 6P8Y SER B 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 183 MET LYS HIS HIS HIS HIS HIS HIS HIS ASP GLU VAL ASP SEQRES 2 A 183 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 3 A 183 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 4 A 183 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 5 A 183 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 6 A 183 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 7 A 183 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 8 A 183 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 9 A 183 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 10 A 183 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 11 A 183 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 12 A 183 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 13 A 183 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 14 A 183 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 15 A 183 LYS SEQRES 1 B 183 MET LYS HIS HIS HIS HIS HIS HIS HIS ASP GLU VAL ASP SEQRES 2 B 183 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 3 B 183 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 4 B 183 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 5 B 183 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 6 B 183 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 7 B 183 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 8 B 183 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 9 B 183 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 10 B 183 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 11 B 183 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 12 B 183 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 13 B 183 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 14 B 183 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 15 B 183 LYS HET MG A 301 1 HET GDP A 302 28 HET O5Y A 303 36 HET MG B 301 1 HET GDP B 302 28 HET O5Y B 303 36 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM O5Y 2-[5-BROMO-3-(5-METHOXY-3,4-DIHYDROISOQUINOLINE-2(1H)- HETNAM 2 O5Y CARBONYL)-1H-INDOL-1-YL]-N-(1-PROPANOYLAZETIDIN-3-YL) HETNAM 3 O5Y ACETAMIDE FORMUL 3 MG 2(MG 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 O5Y 2(C27 H29 BR N4 O4) FORMUL 9 HOH *30(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 ALA A 66 GLY A 75 1 10 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 HIS A 166 1 16 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 ASN B 86 ASP B 92 1 7 HELIX 9 AA9 ASP B 92 ASP B 105 1 14 HELIX 10 AB1 ASP B 126 GLY B 138 1 13 HELIX 11 AB2 GLY B 151 GLU B 168 1 18 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 114 N LEU A 80 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ILE B 55 N TYR B 40 SHEET 3 AA2 6 THR B 2 VAL B 9 1 N TYR B 4 O ASP B 54 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 7 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O VAL B 114 N LEU B 80 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK SG CYS A 12 C01 O5Y A 303 1555 1555 1.81 LINK SG CYS B 12 C01 O5Y B 303 1555 1555 1.81 LINK OG SER A 17 MG MG A 301 1555 1555 2.17 LINK MG MG A 301 O2B GDP A 302 1555 1555 2.18 LINK MG MG A 301 O HOH A 407 1555 1555 2.18 LINK MG MG A 301 O HOH A 411 1555 1555 2.18 LINK MG MG A 301 O HOH A 414 1555 1555 2.18 LINK MG MG A 301 O HOH A 416 1555 1555 2.18 LINK OG SER B 17 MG MG B 301 1555 1555 2.17 LINK MG MG B 301 O1B GDP B 302 1555 1555 2.18 LINK MG MG B 301 O HOH B 401 1555 1555 2.18 LINK MG MG B 301 O HOH B 404 1555 1555 2.18 LINK MG MG B 301 O HOH B 408 1555 1555 2.18 LINK MG MG B 301 O HOH B 409 1555 1555 2.18 SITE 1 AC1 6 SER A 17 GDP A 302 HOH A 407 HOH A 411 SITE 2 AC1 6 HOH A 414 HOH A 416 SITE 1 AC2 23 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC2 23 SER A 17 ALA A 18 PHE A 28 TYR A 32 SITE 3 AC2 23 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 4 AC2 23 SER A 145 ALA A 146 LYS A 147 MG A 301 SITE 5 AC2 23 O5Y A 303 HOH A 401 HOH A 407 HOH A 410 SITE 6 AC2 23 HOH A 411 HOH A 412 HOH A 414 SITE 1 AC3 16 GLY A 10 CYS A 12 LYS A 16 PRO A 34 SITE 2 AC3 16 ALA A 59 ARG A 68 MET A 72 HIS A 95 SITE 3 AC3 16 TYR A 96 GLN A 99 THR A 148 ARG A 149 SITE 4 AC3 16 GDP A 302 HOH A 411 HOH A 415 HOH A 417 SITE 1 AC4 6 SER B 17 GDP B 302 HOH B 401 HOH B 404 SITE 2 AC4 6 HOH B 408 HOH B 409 SITE 1 AC5 19 GLY B 13 VAL B 14 GLY B 15 LYS B 16 SITE 2 AC5 19 SER B 17 ALA B 18 PHE B 28 ASP B 30 SITE 3 AC5 19 ASN B 116 LYS B 117 ASP B 119 LEU B 120 SITE 4 AC5 19 SER B 145 ALA B 146 LYS B 147 MG B 301 SITE 5 AC5 19 O5Y B 303 HOH B 401 HOH B 408 SITE 1 AC6 14 GLY B 10 ALA B 11 GLY B 13 VAL B 14 SITE 2 AC6 14 LYS B 16 PRO B 34 ALA B 59 MET B 72 SITE 3 AC6 14 HIS B 95 TYR B 96 ILE B 100 ARG B 149 SITE 4 AC6 14 GDP B 302 HOH B 408 CRYST1 33.756 106.045 39.900 90.00 93.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029624 0.000000 0.002020 0.00000 SCALE2 0.000000 0.009430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025121 0.00000 CONECT 89 2603 CONECT 119 2574 CONECT 1414 2668 CONECT 1444 2639 CONECT 2574 119 2577 2710 2714 CONECT 2574 2717 2719 CONECT 2575 2576 2577 2578 2579 CONECT 2576 2575 CONECT 2577 2574 2575 CONECT 2578 2575 CONECT 2579 2575 2580 CONECT 2580 2579 2581 2582 2583 CONECT 2581 2580 CONECT 2582 2580 CONECT 2583 2580 2584 CONECT 2584 2583 2585 CONECT 2585 2584 2586 2587 CONECT 2586 2585 2591 CONECT 2587 2585 2588 2589 CONECT 2588 2587 CONECT 2589 2587 2590 2591 CONECT 2590 2589 CONECT 2591 2586 2589 2592 CONECT 2592 2591 2593 2602 CONECT 2593 2592 2594 CONECT 2594 2593 2595 CONECT 2595 2594 2596 2602 CONECT 2596 2595 2597 2598 CONECT 2597 2596 CONECT 2598 2596 2599 CONECT 2599 2598 2600 2601 CONECT 2600 2599 CONECT 2601 2599 2602 CONECT 2602 2592 2595 2601 CONECT 2603 89 2604 CONECT 2604 2603 2605 CONECT 2605 2604 2606 2607 CONECT 2606 2605 CONECT 2607 2605 2608 2610 CONECT 2608 2607 2609 CONECT 2609 2608 2610 2611 CONECT 2610 2607 2609 CONECT 2611 2609 2612 CONECT 2612 2611 2613 2614 CONECT 2613 2612 CONECT 2614 2612 2615 CONECT 2615 2614 2616 2638 CONECT 2616 2615 2617 CONECT 2617 2616 2618 2632 CONECT 2618 2617 2619 2620 CONECT 2619 2618 CONECT 2620 2618 2621 2631 CONECT 2621 2620 2622 CONECT 2622 2621 2623 CONECT 2623 2622 2624 2630 CONECT 2624 2623 2625 2627 CONECT 2625 2624 2626 CONECT 2626 2625 CONECT 2627 2624 2628 CONECT 2628 2627 2629 CONECT 2629 2628 2630 CONECT 2630 2623 2629 2631 CONECT 2631 2620 2630 CONECT 2632 2617 2633 2638 CONECT 2633 2632 2634 CONECT 2634 2633 2635 2636 CONECT 2635 2634 CONECT 2636 2634 2637 CONECT 2637 2636 2638 CONECT 2638 2615 2632 2637 CONECT 2639 1444 2641 2724 2727 CONECT 2639 2731 2732 CONECT 2640 2641 2642 2643 2644 CONECT 2641 2639 2640 CONECT 2642 2640 CONECT 2643 2640 CONECT 2644 2640 2645 CONECT 2645 2644 2646 2647 2648 CONECT 2646 2645 CONECT 2647 2645 CONECT 2648 2645 2649 CONECT 2649 2648 2650 CONECT 2650 2649 2651 2652 CONECT 2651 2650 2656 CONECT 2652 2650 2653 2654 CONECT 2653 2652 CONECT 2654 2652 2655 2656 CONECT 2655 2654 CONECT 2656 2651 2654 2657 CONECT 2657 2656 2658 2667 CONECT 2658 2657 2659 CONECT 2659 2658 2660 CONECT 2660 2659 2661 2667 CONECT 2661 2660 2662 2663 CONECT 2662 2661 CONECT 2663 2661 2664 CONECT 2664 2663 2665 2666 CONECT 2665 2664 CONECT 2666 2664 2667 CONECT 2667 2657 2660 2666 CONECT 2668 1414 2669 CONECT 2669 2668 2670 CONECT 2670 2669 2671 2672 CONECT 2671 2670 CONECT 2672 2670 2673 2675 CONECT 2673 2672 2674 CONECT 2674 2673 2675 2676 CONECT 2675 2672 2674 CONECT 2676 2674 2677 CONECT 2677 2676 2678 2679 CONECT 2678 2677 CONECT 2679 2677 2680 CONECT 2680 2679 2681 2703 CONECT 2681 2680 2682 CONECT 2682 2681 2683 2697 CONECT 2683 2682 2684 2685 CONECT 2684 2683 CONECT 2685 2683 2686 2696 CONECT 2686 2685 2687 CONECT 2687 2686 2688 CONECT 2688 2687 2689 2695 CONECT 2689 2688 2690 2692 CONECT 2690 2689 2691 CONECT 2691 2690 CONECT 2692 2689 2693 CONECT 2693 2692 2694 CONECT 2694 2693 2695 CONECT 2695 2688 2694 2696 CONECT 2696 2685 2695 CONECT 2697 2682 2698 2703 CONECT 2698 2697 2699 CONECT 2699 2698 2700 2701 CONECT 2700 2699 CONECT 2701 2699 2702 CONECT 2702 2701 2703 CONECT 2703 2680 2697 2702 CONECT 2710 2574 CONECT 2714 2574 CONECT 2717 2574 CONECT 2719 2574 CONECT 2724 2639 CONECT 2727 2639 CONECT 2731 2639 CONECT 2732 2639 MASTER 374 0 6 11 12 0 23 6 2731 2 144 30 END