HEADER SIGNALING PROTEIN/INHIBITOR 08-JUN-19 6P8Y TITLE CRYSTAL STRUCTURE OF HUMAN KRAS G12C COVALENTLY BOUND TO AN TITLE 2 ACRYLOYLAZETIDINE ACETAMIDE INHIBITOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: VAR_006839 G12C; SOURCE 6 GENE: KRAS, KRAS2, RASK2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, GTPASE, SIGNALING PROTEIN, SIGNALING PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.MOHR REVDAT 3 13-NOV-24 6P8Y 1 SEQADV LINK REVDAT 2 02-OCT-19 6P8Y 1 JRNL REVDAT 1 28-AUG-19 6P8Y 0 JRNL AUTH Y.SHIN,J.W.JEONG,R.P.WURZ,P.ACHANTA,T.ARVEDSON, JRNL AUTH 2 M.D.BARTBERGER,I.D.G.CAMPUZANO,R.FUCINI,S.K.HANSEN, JRNL AUTH 3 J.INGERSOLL,J.S.IWIG,J.R.LIPFORD,V.MA,D.J.KOPECKY, JRNL AUTH 4 J.MCCARTER,T.SAN MIGUEL,C.MOHR,S.SABET,A.Y.SAIKI,A.SAWAYAMA, JRNL AUTH 5 S.SETHOFER,C.M.TEGLEY,L.P.VOLAK,K.YANG,B.A.LANMAN, JRNL AUTH 6 D.A.ERLANSON,V.J.CEE JRNL TITL DISCOVERY OFN-(1-ACRYLOYLAZETIDIN-3-YL)-2-(1H-INDOL-1-YL) JRNL TITL 2 ACETAMIDES AS COVALENT INHIBITORS OF KRASG12C. JRNL REF ACS MED.CHEM.LETT. V. 10 1302 2019 JRNL REFN ISSN 1948-5875 JRNL PMID 31531201 JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00258 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 11311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 574 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 804 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2571 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.60000 REMARK 3 B22 (A**2) : -2.76000 REMARK 3 B33 (A**2) : 5.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.499 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.314 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.361 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2762 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2530 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3727 ; 1.038 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5816 ; 0.879 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 4.208 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;37.441 ;24.453 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;16.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.380 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3037 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 594 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1292 ; 1.157 ; 5.105 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1291 ; 1.157 ; 5.105 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 2.073 ; 7.641 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1609 ; 2.073 ; 7.642 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1470 ; 1.038 ; 5.251 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1422 ; 1.024 ; 5.252 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2047 ; 1.814 ; 7.827 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3043 ; 3.989 ;40.337 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2972 ; 3.977 ;39.874 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 166 B 1 166 8825 0.15 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6P8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO V2.3.9, HKL-2000 V717 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK V2.3.9, HKL-2000 V717 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.19000 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51100 REMARK 200 FOR SHELL : 3.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 CITRATE PH5.6, 32% PEG4000, 0.005M MAGNESIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.02250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 LYS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 ASP A -4 REMARK 465 GLU A -3 REMARK 465 VAL A -2 REMARK 465 ASP A -1 REMARK 465 GLY A 0 REMARK 465 LYS A 167 REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 MET B -13 REMARK 465 LYS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 ASP B -4 REMARK 465 GLU B -3 REMARK 465 VAL B -2 REMARK 465 ASP B -1 REMARK 465 GLU B 31 REMARK 465 TYR B 32 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 TYR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 MET B 67 REMARK 465 ARG B 68 REMARK 465 ASP B 69 REMARK 465 LYS B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 59 11.55 -146.32 REMARK 500 LYS A 117 37.05 75.96 REMARK 500 ALA B 59 -145.36 -162.07 REMARK 500 LYS B 117 37.42 75.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 302 O2B 88.1 REMARK 620 3 HOH A 407 O 91.6 106.8 REMARK 620 4 HOH A 411 O 149.1 101.0 113.3 REMARK 620 5 HOH A 414 O 80.0 84.5 165.8 71.7 REMARK 620 6 HOH A 416 O 94.7 163.8 89.1 68.9 80.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 302 O1B 89.4 REMARK 620 3 HOH B 401 O 90.2 95.4 REMARK 620 4 HOH B 404 O 89.1 93.1 171.5 REMARK 620 5 HOH B 408 O 163.5 99.6 102.6 76.7 REMARK 620 6 HOH B 409 O 96.5 171.6 90.6 81.1 73.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O5Y A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide O5Y B 303 and CYS B REMARK 800 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6P8W RELATED DB: PDB REMARK 900 RELATED ID: 6P8X RELATED DB: PDB DBREF 6P8Y A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 6P8Y B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 6P8Y MET A -13 UNP P01116 EXPRESSION TAG SEQADV 6P8Y LYS A -12 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -11 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -10 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -9 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -8 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -7 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -6 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS A -5 UNP P01116 EXPRESSION TAG SEQADV 6P8Y ASP A -4 UNP P01116 EXPRESSION TAG SEQADV 6P8Y GLU A -3 UNP P01116 EXPRESSION TAG SEQADV 6P8Y VAL A -2 UNP P01116 EXPRESSION TAG SEQADV 6P8Y ASP A -1 UNP P01116 EXPRESSION TAG SEQADV 6P8Y GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 6P8Y CYS A 12 UNP P01116 GLY 12 VARIANT SEQADV 6P8Y SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 6P8Y LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 6P8Y SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 6P8Y MET B -13 UNP P01116 EXPRESSION TAG SEQADV 6P8Y LYS B -12 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -11 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -10 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -9 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -8 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -7 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -6 UNP P01116 EXPRESSION TAG SEQADV 6P8Y HIS B -5 UNP P01116 EXPRESSION TAG SEQADV 6P8Y ASP B -4 UNP P01116 EXPRESSION TAG SEQADV 6P8Y GLU B -3 UNP P01116 EXPRESSION TAG SEQADV 6P8Y VAL B -2 UNP P01116 EXPRESSION TAG SEQADV 6P8Y ASP B -1 UNP P01116 EXPRESSION TAG SEQADV 6P8Y GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 6P8Y CYS B 12 UNP P01116 GLY 12 VARIANT SEQADV 6P8Y SER B 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 6P8Y LEU B 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 6P8Y SER B 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 183 MET LYS HIS HIS HIS HIS HIS HIS HIS ASP GLU VAL ASP SEQRES 2 A 183 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 3 A 183 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 4 A 183 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 5 A 183 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 6 A 183 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 7 A 183 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 8 A 183 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 9 A 183 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 10 A 183 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 11 A 183 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 12 A 183 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 13 A 183 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 14 A 183 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 15 A 183 LYS SEQRES 1 B 183 MET LYS HIS HIS HIS HIS HIS HIS HIS ASP GLU VAL ASP SEQRES 2 B 183 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 3 B 183 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 4 B 183 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 5 B 183 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 6 B 183 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 7 B 183 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 8 B 183 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 9 B 183 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 10 B 183 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 11 B 183 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 12 B 183 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 13 B 183 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 14 B 183 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 15 B 183 LYS HET MG A 301 1 HET GDP A 302 28 HET O5Y A 303 36 HET MG B 301 1 HET GDP B 302 28 HET O5Y B 303 36 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM O5Y 2-[5-BROMO-3-(5-METHOXY-3,4-DIHYDROISOQUINOLINE-2(1H)- HETNAM 2 O5Y CARBONYL)-1H-INDOL-1-YL]-N-(1-PROPANOYLAZETIDIN-3-YL) HETNAM 3 O5Y ACETAMIDE FORMUL 3 MG 2(MG 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 O5Y 2(C27 H29 BR N4 O4) FORMUL 9 HOH *30(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 ALA A 66 GLY A 75 1 10 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 HIS A 166 1 16 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 ASN B 86 ASP B 92 1 7 HELIX 9 AA9 ASP B 92 ASP B 105 1 14 HELIX 10 AB1 ASP B 126 GLY B 138 1 13 HELIX 11 AB2 GLY B 151 GLU B 168 1 18 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 114 N LEU A 80 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ILE B 55 N TYR B 40 SHEET 3 AA2 6 THR B 2 VAL B 9 1 N TYR B 4 O ASP B 54 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 7 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O VAL B 114 N LEU B 80 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK SG CYS A 12 C01 O5Y A 303 1555 1555 1.81 LINK SG CYS B 12 C01 O5Y B 303 1555 1555 1.81 LINK OG SER A 17 MG MG A 301 1555 1555 2.17 LINK MG MG A 301 O2B GDP A 302 1555 1555 2.18 LINK MG MG A 301 O HOH A 407 1555 1555 2.18 LINK MG MG A 301 O HOH A 411 1555 1555 2.18 LINK MG MG A 301 O HOH A 414 1555 1555 2.18 LINK MG MG A 301 O HOH A 416 1555 1555 2.18 LINK OG SER B 17 MG MG B 301 1555 1555 2.17 LINK MG MG B 301 O1B GDP B 302 1555 1555 2.18 LINK MG MG B 301 O HOH B 401 1555 1555 2.18 LINK MG MG B 301 O HOH B 404 1555 1555 2.18 LINK MG MG B 301 O HOH B 408 1555 1555 2.18 LINK MG MG B 301 O HOH B 409 1555 1555 2.18 SITE 1 AC1 6 SER A 17 GDP A 302 HOH A 407 HOH A 411 SITE 2 AC1 6 HOH A 414 HOH A 416 SITE 1 AC2 23 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC2 23 SER A 17 ALA A 18 PHE A 28 TYR A 32 SITE 3 AC2 23 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 4 AC2 23 SER A 145 ALA A 146 LYS A 147 MG A 301 SITE 5 AC2 23 O5Y A 303 HOH A 401 HOH A 407 HOH A 410 SITE 6 AC2 23 HOH A 411 HOH A 412 HOH A 414 SITE 1 AC3 16 GLY A 10 CYS A 12 LYS A 16 PRO A 34 SITE 2 AC3 16 ALA A 59 ARG A 68 MET A 72 HIS A 95 SITE 3 AC3 16 TYR A 96 GLN A 99 THR A 148 ARG A 149 SITE 4 AC3 16 GDP A 302 HOH A 411 HOH A 415 HOH A 417 SITE 1 AC4 6 SER B 17 GDP B 302 HOH B 401 HOH B 404 SITE 2 AC4 6 HOH B 408 HOH B 409 SITE 1 AC5 19 GLY B 13 VAL B 14 GLY B 15 LYS B 16 SITE 2 AC5 19 SER B 17 ALA B 18 PHE B 28 ASP B 30 SITE 3 AC5 19 ASN B 116 LYS B 117 ASP B 119 LEU B 120 SITE 4 AC5 19 SER B 145 ALA B 146 LYS B 147 MG B 301 SITE 5 AC5 19 O5Y B 303 HOH B 401 HOH B 408 SITE 1 AC6 14 GLY B 10 ALA B 11 GLY B 13 VAL B 14 SITE 2 AC6 14 LYS B 16 PRO B 34 ALA B 59 MET B 72 SITE 3 AC6 14 HIS B 95 TYR B 96 ILE B 100 ARG B 149 SITE 4 AC6 14 GDP B 302 HOH B 408 CRYST1 33.756 106.045 39.900 90.00 93.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029624 0.000000 0.002020 0.00000 SCALE2 0.000000 0.009430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025121 0.00000