HEADER SIGNALING PROTEIN/INHIBITOR 08-JUN-19 6P8Z TITLE CRYSTAL STRUCTURE OF HUMAN KRAS G12C COVALENTLY BOUND TO AN TITLE 2 ACRYLOYLAZETIDINE ACETAMIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: VAR_006839; SOURCE 6 GENE: KRAS, KRAS2, RASK2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, GTPASE, SIGNALING PROTEIN, SIGNALING PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.MOHR REVDAT 2 02-OCT-19 6P8Z 1 JRNL REVDAT 1 28-AUG-19 6P8Z 0 JRNL AUTH Y.SHIN,J.W.JEONG,R.P.WURZ,P.ACHANTA,T.ARVEDSON, JRNL AUTH 2 M.D.BARTBERGER,I.D.G.CAMPUZANO,R.FUCINI,S.K.HANSEN, JRNL AUTH 3 J.INGERSOLL,J.S.IWIG,J.R.LIPFORD,V.MA,D.J.KOPECKY, JRNL AUTH 4 J.MCCARTER,T.SAN MIGUEL,C.MOHR,S.SABET,A.Y.SAIKI,A.SAWAYAMA, JRNL AUTH 5 S.SETHOFER,C.M.TEGLEY,L.P.VOLAK,K.YANG,B.A.LANMAN, JRNL AUTH 6 D.A.ERLANSON,V.J.CEE JRNL TITL DISCOVERY OFN-(1-ACRYLOYLAZETIDIN-3-YL)-2-(1H-INDOL-1-YL) JRNL TITL 2 ACETAMIDES AS COVALENT INHIBITORS OF KRASG12C. JRNL REF ACS MED.CHEM.LETT. V. 10 1302 2019 JRNL REFN ISSN 1948-5875 JRNL PMID 31531201 JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00258 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 34850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1774 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2381 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2641 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.60000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -2.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.401 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2855 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2592 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3844 ; 1.128 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5960 ; 0.880 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 4.877 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;38.064 ;24.403 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 491 ;14.818 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.605 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 422 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3132 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 616 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1339 ; 1.243 ; 3.111 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1330 ; 1.239 ; 3.106 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1646 ; 1.940 ; 4.649 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1647 ; 1.939 ; 4.651 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1516 ; 1.183 ; 3.298 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1463 ; 1.197 ; 3.314 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2114 ; 2.026 ; 4.894 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3470 ; 4.348 ;26.025 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3285 ; 4.195 ;25.504 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 167 B 2 167 9583 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6P8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO V2.3.9, HKL-2000 V717 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK V2.3.9, HKL-2000 V717 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37138 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61300 REMARK 200 FOR SHELL : 1.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM CHLORIDE, 0.1M TRIS REMARK 280 PH8.5, 20% PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.69600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 LYS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 ASP A -4 REMARK 465 GLU A -3 REMARK 465 VAL A -2 REMARK 465 ASP A -1 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 TYR A 64 REMARK 465 SER A 65 REMARK 465 LYS A 169 REMARK 465 MET B -13 REMARK 465 LYS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 ASP B -4 REMARK 465 GLU B -3 REMARK 465 VAL B -2 REMARK 465 ASP B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLU B 168 REMARK 465 LYS B 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 117 35.74 74.03 REMARK 500 ARG A 149 -0.65 79.13 REMARK 500 ASP B 108 79.95 -110.12 REMARK 500 LYS B 117 35.52 74.17 REMARK 500 ARG B 149 -0.32 79.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 508 DISTANCE = 6.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 HOH A 418 O 90.9 REMARK 620 3 HOH A 451 O 97.7 83.4 REMARK 620 4 HOH A 426 O 170.9 92.6 91.1 REMARK 620 5 HOH A 431 O 79.1 98.8 176.1 92.0 REMARK 620 6 GDP A 303 O1B 85.7 171.1 88.9 92.0 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 138 O REMARK 620 2 HOH A 443 O 77.0 REMARK 620 3 HOH B 438 O 95.7 131.0 REMARK 620 4 HOH B 462 O 77.1 143.9 76.3 REMARK 620 5 HOH B 503 O 162.4 88.3 86.6 120.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 303 O1B 87.8 REMARK 620 3 HOH B 415 O 79.9 87.2 REMARK 620 4 HOH B 405 O 91.2 88.6 170.3 REMARK 620 5 HOH B 426 O 92.9 174.6 98.2 86.1 REMARK 620 6 HOH B 467 O 167.9 98.6 90.1 99.2 81.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 138 O REMARK 620 2 HOH B 473 O 147.3 REMARK 620 3 HOH B 404 O 74.8 137.2 REMARK 620 4 HOH B 498 O 104.2 78.4 84.2 REMARK 620 5 HOH B 489 O 87.5 80.3 120.0 155.5 REMARK 620 6 HOH B 453 O 84.6 64.3 146.0 74.9 85.1 REMARK 620 7 HOH B 406 O 141.6 69.5 72.3 91.8 92.0 133.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O5S A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide O5S B 304 and CYS B REMARK 800 12 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6P8W RELATED DB: PDB REMARK 900 RELATED ID: 6P8X RELATED DB: PDB REMARK 900 RELATED ID: 6P8Y RELATED DB: PDB DBREF 6P8Z A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 6P8Z B 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 6P8Z MET A -13 UNP P01116 EXPRESSION TAG SEQADV 6P8Z LYS A -12 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS A -11 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS A -10 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS A -9 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS A -8 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS A -7 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS A -6 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS A -5 UNP P01116 EXPRESSION TAG SEQADV 6P8Z ASP A -4 UNP P01116 EXPRESSION TAG SEQADV 6P8Z GLU A -3 UNP P01116 EXPRESSION TAG SEQADV 6P8Z VAL A -2 UNP P01116 EXPRESSION TAG SEQADV 6P8Z ASP A -1 UNP P01116 EXPRESSION TAG SEQADV 6P8Z GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 6P8Z CYS A 12 UNP P01116 GLY 12 VARIANT SEQADV 6P8Z SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 6P8Z LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 6P8Z SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQADV 6P8Z MET B -13 UNP P01116 EXPRESSION TAG SEQADV 6P8Z LYS B -12 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS B -11 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS B -10 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS B -9 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS B -8 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS B -7 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS B -6 UNP P01116 EXPRESSION TAG SEQADV 6P8Z HIS B -5 UNP P01116 EXPRESSION TAG SEQADV 6P8Z ASP B -4 UNP P01116 EXPRESSION TAG SEQADV 6P8Z GLU B -3 UNP P01116 EXPRESSION TAG SEQADV 6P8Z VAL B -2 UNP P01116 EXPRESSION TAG SEQADV 6P8Z ASP B -1 UNP P01116 EXPRESSION TAG SEQADV 6P8Z GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 6P8Z CYS B 12 UNP P01116 GLY 12 VARIANT SEQADV 6P8Z SER B 51 UNP P01116 CYS 51 ENGINEERED MUTATION SEQADV 6P8Z LEU B 80 UNP P01116 CYS 80 ENGINEERED MUTATION SEQADV 6P8Z SER B 118 UNP P01116 CYS 118 ENGINEERED MUTATION SEQRES 1 A 183 MET LYS HIS HIS HIS HIS HIS HIS HIS ASP GLU VAL ASP SEQRES 2 A 183 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 3 A 183 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 4 A 183 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 5 A 183 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 6 A 183 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 7 A 183 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 8 A 183 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 9 A 183 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 10 A 183 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 11 A 183 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 12 A 183 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 13 A 183 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 14 A 183 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 15 A 183 LYS SEQRES 1 B 183 MET LYS HIS HIS HIS HIS HIS HIS HIS ASP GLU VAL ASP SEQRES 2 B 183 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS SEQRES 3 B 183 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 4 B 183 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 5 B 183 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER SEQRES 6 B 183 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 7 B 183 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 8 B 183 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 9 B 183 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 10 B 183 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 11 B 183 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 12 B 183 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 13 B 183 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 14 B 183 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 15 B 183 LYS HET CA A 301 1 HET CA A 302 1 HET GDP A 303 28 HET O5S A 304 40 HET CA B 301 1 HET CA B 302 1 HET GDP B 303 28 HET O5S B 304 40 HETNAM CA CALCIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM O5S 2-[5-CHLORO-2-CYCLOPROPYL-3-(5-METHOXY-3,4- HETNAM 2 O5S DIHYDROISOQUINOLINE-2(1H)-CARBONYL)-7-METHYL-1H-INDOL- HETNAM 3 O5S 1-YL]-N-(1-PROPANOYLAZETIDIN-3-YL)ACETAMIDE FORMUL 3 CA 4(CA 2+) FORMUL 5 GDP 2(C10 H15 N5 O11 P2) FORMUL 6 O5S 2(C31 H35 CL N4 O4) FORMUL 11 HOH *255(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 MET A 67 GLY A 75 1 9 HELIX 3 AA3 ASN A 86 ASP A 105 1 20 HELIX 4 AA4 ASP A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 GLU A 168 1 18 HELIX 6 AA6 GLY B 15 ASN B 26 1 12 HELIX 7 AA7 TYR B 64 MET B 67 5 4 HELIX 8 AA8 ARG B 68 GLY B 75 1 8 HELIX 9 AA9 ASN B 86 ASP B 105 1 20 HELIX 10 AB1 ASP B 126 GLY B 138 1 13 HELIX 11 AB2 GLY B 151 LYS B 167 1 17 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 GLU A 3 VAL A 9 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O SER B 51 N VAL B 44 SHEET 3 AA2 6 GLU B 3 VAL B 9 1 N LEU B 6 O LEU B 56 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK SG CYS A 12 C01 O5S A 304 1555 1555 1.81 LINK OG SER A 17 CA CA A 301 1555 1555 2.32 LINK O GLY A 138 CA CA A 302 1555 1555 2.32 LINK SG CYS B 12 C01 O5S B 304 1555 1555 1.81 LINK OG SER B 17 CA CA B 301 1555 1555 2.32 LINK O GLY B 138 CA CA B 302 1555 1555 2.32 LINK CA CA A 301 O HOH A 418 1555 1555 2.33 LINK CA CA A 301 O HOH A 451 1555 1555 2.32 LINK CA CA A 301 O HOH A 426 1555 1555 2.32 LINK CA CA A 301 O HOH A 431 1555 1555 2.31 LINK CA CA A 301 O1B GDP A 303 1555 1555 2.32 LINK CA CA A 302 O HOH A 443 1555 1555 2.33 LINK CA CA B 301 O1B GDP B 303 1555 1555 2.32 LINK CA CA B 301 O HOH B 415 1555 1555 2.32 LINK CA CA B 301 O HOH B 405 1555 1555 2.33 LINK CA CA B 301 O HOH B 426 1555 1555 2.32 LINK CA CA B 301 O HOH B 467 1555 1555 2.32 LINK CA CA B 302 O HOH B 473 1555 1555 2.32 LINK CA CA B 302 O HOH B 404 1555 1555 2.76 LINK CA CA B 302 O HOH B 498 1555 1555 2.32 LINK CA CA B 302 O HOH B 489 1555 1555 2.32 LINK CA CA B 302 O HOH B 453 1555 1555 2.89 LINK CA CA A 302 O HOH B 438 1555 2656 2.32 LINK CA CA A 302 O HOH B 462 1555 2656 2.32 LINK CA CA A 302 O HOH B 503 1555 2656 2.32 LINK CA CA B 302 O HOH B 406 1555 2645 2.32 SITE 1 AC1 6 SER A 17 GDP A 303 HOH A 418 HOH A 426 SITE 2 AC1 6 HOH A 431 HOH A 451 SITE 1 AC2 2 GLY A 138 HOH A 443 SITE 1 AC3 23 GLY A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC3 23 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC3 23 ASP A 30 ASN A 116 LYS A 117 ASP A 119 SITE 4 AC3 23 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 5 AC3 23 CA A 301 HOH A 414 HOH A 426 HOH A 451 SITE 6 AC3 23 HOH A 457 HOH A 467 HOH A 503 SITE 1 AC4 18 VAL A 9 GLY A 10 CYS A 12 LYS A 16 SITE 2 AC4 18 PRO A 34 THR A 58 ALA A 59 GLY A 60 SITE 3 AC4 18 ARG A 68 MET A 72 ASP A 92 HIS A 95 SITE 4 AC4 18 TYR A 96 GLN A 99 ILE A 100 HOH A 426 SITE 5 AC4 18 HOH A 473 HOH A 490 SITE 1 AC5 6 SER B 17 GDP B 303 HOH B 405 HOH B 415 SITE 2 AC5 6 HOH B 426 HOH B 467 SITE 1 AC6 6 GLY B 138 HOH B 404 HOH B 453 HOH B 473 SITE 2 AC6 6 HOH B 489 HOH B 498 SITE 1 AC7 24 ALA B 11 GLY B 13 VAL B 14 GLY B 15 SITE 2 AC7 24 LYS B 16 SER B 17 ALA B 18 PHE B 28 SITE 3 AC7 24 VAL B 29 ASP B 30 GLU B 31 ASN B 116 SITE 4 AC7 24 LYS B 117 ASP B 119 LEU B 120 SER B 145 SITE 5 AC7 24 ALA B 146 LYS B 147 CA B 301 O5S B 304 SITE 6 AC7 24 HOH B 403 HOH B 405 HOH B 420 HOH B 459 SITE 1 AC8 23 ILE A 24 GLN A 25 HIS A 27 TYR A 40 SITE 2 AC8 23 GLY B 10 ALA B 11 GLY B 13 VAL B 14 SITE 3 AC8 23 LYS B 16 PRO B 34 ALA B 59 GLY B 60 SITE 4 AC8 23 GLN B 61 GLU B 62 ARG B 68 MET B 72 SITE 5 AC8 23 ASP B 92 HIS B 95 TYR B 96 GLN B 99 SITE 6 AC8 23 GDP B 303 HOH B 449 HOH B 467 CRYST1 39.758 65.392 62.596 90.00 105.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025152 0.000000 0.006782 0.00000 SCALE2 0.000000 0.015292 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016546 0.00000