HEADER MEMBRANE PROTEIN 11-JUN-19 6PAJ TITLE STRUCTURE OF THE SRRAB HISTIDINE KINASE DHP-CA DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN SRRB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DHP-CA DOMAIN (UNP RESIDUES 355-583); COMPND 5 SYNONYM: STAPHYLOCOCCAL RESPIRATORY RESPONSE PROTEIN B; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: SRRB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS-RIL KEYWDS SENSOR PROTEIN, DIMER, HISTIDINE KINASE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.L.LOPEZ REDONDO,A.MARINA MORENO REVDAT 3 03-JUN-20 6PAJ 1 JRNL REVDAT 2 13-MAY-20 6PAJ 1 JRNL REVDAT 1 22-APR-20 6PAJ 0 JRNL AUTH N.TIWARI,M.LOPEZ-REDONDO,L.MIGUEL-ROMERO,K.KULHANKOVA, JRNL AUTH 2 M.P.CAHILL,P.M.TRAN,K.J.KINNEY,S.H.KILGORE,H.AL-TAMEEMI, JRNL AUTH 3 C.A.HERFST,S.W.TUFFS,J.R.KIRBY,J.M.BOYD,J.K.MCCORMICK, JRNL AUTH 4 W.SALGADO-PABON,A.MARINA,P.M.SCHLIEVERT,E.J.FUENTES JRNL TITL THE SRRAB TWO-COMPONENT SYSTEM REGULATESSTAPHYLOCOCCUS JRNL TITL 2 AUREUSPATHOGENICITY THROUGH REDOX SENSITIVE CYSTEINES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 10989 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32354997 JRNL DOI 10.1073/PNAS.1921307117 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 31592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1671 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2321 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3158 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.79000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -1.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.890 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3331 ; 0.011 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 3191 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4522 ; 1.455 ; 1.732 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7504 ; 0.488 ; 1.707 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 5.969 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;37.083 ;20.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;17.809 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.776 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3698 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 534 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6PAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000241745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979,0.9505 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 69.082 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : 0.34600 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 15% MPD, 0.1 M SODIUM REMARK 280 CITRATE PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.47600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 355 REMARK 465 THR A 517 REMARK 465 GLY A 518 REMARK 465 ILE A 519 REMARK 465 ALA A 520 REMARK 465 PRO A 521 REMARK 465 GLU A 522 REMARK 465 HIS A 523 REMARK 465 LEU A 524 REMARK 465 GLN A 525 REMARK 465 GLN A 526 REMARK 465 VAL A 527 REMARK 465 PHE A 528 REMARK 465 ASP A 529 REMARK 465 ARG A 530 REMARK 465 PHE A 531 REMARK 465 TYR A 532 REMARK 465 LYS A 533 REMARK 465 VAL A 534 REMARK 465 ASP A 535 REMARK 465 ALA A 536 REMARK 465 ALA A 537 REMARK 465 ARG A 538 REMARK 465 THR A 539 REMARK 465 ARG A 540 REMARK 465 GLY A 541 REMARK 465 LYS A 542 REMARK 465 GLN A 543 REMARK 465 GLY A 544 REMARK 465 THR A 545 REMARK 465 THR B 517 REMARK 465 GLY B 518 REMARK 465 ILE B 519 REMARK 465 ALA B 520 REMARK 465 PRO B 521 REMARK 465 GLU B 522 REMARK 465 HIS B 523 REMARK 465 LEU B 524 REMARK 465 GLN B 525 REMARK 465 GLN B 526 REMARK 465 VAL B 527 REMARK 465 PHE B 528 REMARK 465 ASP B 529 REMARK 465 ARG B 530 REMARK 465 PHE B 531 REMARK 465 TYR B 532 REMARK 465 LYS B 533 REMARK 465 VAL B 534 REMARK 465 ASP B 535 REMARK 465 ALA B 536 REMARK 465 ALA B 537 REMARK 465 ARG B 538 REMARK 465 THR B 539 REMARK 465 ARG B 540 REMARK 465 GLY B 541 REMARK 465 LYS B 542 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 558 O REMARK 470 LEU A 569 CG CD1 CD2 REMARK 470 LYS A 571 CG CD CE NZ REMARK 470 GLN B 450 CG CD OE1 NE2 REMARK 470 GLN B 543 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 725 O HOH B 874 1.95 REMARK 500 OD2 ASP B 387 O HOH B 701 2.00 REMARK 500 OE2 GLU A 583 O HOH A 601 2.04 REMARK 500 CB ALA A 438 O HOH A 692 2.05 REMARK 500 O HOH A 604 O HOH A 688 2.10 REMARK 500 NE2 GLN B 379 O HOH B 702 2.13 REMARK 500 OE2 GLU B 426 O HOH B 703 2.14 REMARK 500 OD2 ASP A 387 O HOH A 602 2.16 REMARK 500 CD GLU A 370 O HOH A 607 2.17 REMARK 500 O GLU A 583 O HOH A 603 2.18 REMARK 500 OE1 GLU B 558 O HOH B 704 2.18 REMARK 500 OXT GLU A 583 O HOH A 604 2.18 REMARK 500 OH TYR B 511 O HOH B 705 2.18 REMARK 500 OD2 ASP B 502 O HOH B 706 2.19 REMARK 500 O GLY A 388 O HOH A 605 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 719 O HOH B 824 2656 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 391 -38.72 -135.78 REMARK 500 LYS A 466 33.48 -88.28 REMARK 500 ASN A 504 -165.59 -108.89 REMARK 500 LEU A 569 125.23 -36.87 REMARK 500 THR B 391 -33.17 -141.13 REMARK 500 ASN B 504 -156.03 -118.87 REMARK 500 THR B 515 44.59 -102.68 REMARK 500 THR B 545 -48.06 -139.88 REMARK 500 LYS B 571 -96.56 50.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 372 0.09 SIDE CHAIN REMARK 500 ARG B 449 0.10 SIDE CHAIN REMARK 500 ARG B 475 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 601 DBREF 6PAJ A 355 583 UNP Q9L523 SRRB_STAAU 355 583 DBREF 6PAJ B 355 583 UNP Q9L523 SRRB_STAAU 355 583 SEQRES 1 A 229 ASN LEU ASP GLN MET LYS LYS ASP PHE ILE ALA ASN VAL SEQRES 2 A 229 SER HIS GLU LEU ARG THR PRO ILE SER LEU LEU GLN GLY SEQRES 3 A 229 TYR THR GLU SER ILE VAL ASP GLY ILE VAL THR GLU PRO SEQRES 4 A 229 ASP GLU ILE LYS GLU SER LEU ALA ILE VAL LEU ASP GLU SEQRES 5 A 229 SER LYS ARG LEU ASN ARG LEU VAL ASN GLU LEU LEU ASN SEQRES 6 A 229 VAL ALA ARG MET ASP ALA GLU GLY LEU SER VAL ASN LYS SEQRES 7 A 229 GLU VAL GLN PRO ILE ALA ALA LEU LEU ASP LYS MET LYS SEQRES 8 A 229 ILE LYS TYR ARG GLN GLN ALA ASP ASP LEU GLY LEU ASN SEQRES 9 A 229 MET THR PHE ASN TYR CYS LYS LYS ARG VAL TRP SER TYR SEQRES 10 A 229 ASP MET ASP ARG MET ASP GLN VAL LEU THR ASN LEU ILE SEQRES 11 A 229 ASP ASN ALA SER ARG TYR THR LYS PRO GLY ASP GLU ILE SEQRES 12 A 229 ALA ILE THR CYS ASP GLU ASN GLU SER GLU ASP ILE LEU SEQRES 13 A 229 TYR ILE LYS ASP THR GLY THR GLY ILE ALA PRO GLU HIS SEQRES 14 A 229 LEU GLN GLN VAL PHE ASP ARG PHE TYR LYS VAL ASP ALA SEQRES 15 A 229 ALA ARG THR ARG GLY LYS GLN GLY THR GLY LEU GLY LEU SEQRES 16 A 229 PHE ILE CYS LYS MET ILE ILE GLU GLU HIS GLY GLY SER SEQRES 17 A 229 ILE ASP VAL LYS SER GLU LEU GLY LYS GLY THR THR PHE SEQRES 18 A 229 ILE ILE LYS LEU PRO LYS PRO GLU SEQRES 1 B 229 ASN LEU ASP GLN MET LYS LYS ASP PHE ILE ALA ASN VAL SEQRES 2 B 229 SER HIS GLU LEU ARG THR PRO ILE SER LEU LEU GLN GLY SEQRES 3 B 229 TYR THR GLU SER ILE VAL ASP GLY ILE VAL THR GLU PRO SEQRES 4 B 229 ASP GLU ILE LYS GLU SER LEU ALA ILE VAL LEU ASP GLU SEQRES 5 B 229 SER LYS ARG LEU ASN ARG LEU VAL ASN GLU LEU LEU ASN SEQRES 6 B 229 VAL ALA ARG MET ASP ALA GLU GLY LEU SER VAL ASN LYS SEQRES 7 B 229 GLU VAL GLN PRO ILE ALA ALA LEU LEU ASP LYS MET LYS SEQRES 8 B 229 ILE LYS TYR ARG GLN GLN ALA ASP ASP LEU GLY LEU ASN SEQRES 9 B 229 MET THR PHE ASN TYR CYS LYS LYS ARG VAL TRP SER TYR SEQRES 10 B 229 ASP MET ASP ARG MET ASP GLN VAL LEU THR ASN LEU ILE SEQRES 11 B 229 ASP ASN ALA SER ARG TYR THR LYS PRO GLY ASP GLU ILE SEQRES 12 B 229 ALA ILE THR CYS ASP GLU ASN GLU SER GLU ASP ILE LEU SEQRES 13 B 229 TYR ILE LYS ASP THR GLY THR GLY ILE ALA PRO GLU HIS SEQRES 14 B 229 LEU GLN GLN VAL PHE ASP ARG PHE TYR LYS VAL ASP ALA SEQRES 15 B 229 ALA ARG THR ARG GLY LYS GLN GLY THR GLY LEU GLY LEU SEQRES 16 B 229 PHE ILE CYS LYS MET ILE ILE GLU GLU HIS GLY GLY SER SEQRES 17 B 229 ILE ASP VAL LYS SER GLU LEU GLY LYS GLY THR THR PHE SEQRES 18 B 229 ILE ILE LYS LEU PRO LYS PRO GLU HET MPD B 601 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 MPD C6 H14 O2 FORMUL 4 HOH *334(H2 O) HELIX 1 AA1 LEU A 356 ASP A 387 1 32 HELIX 2 AA2 GLU A 392 GLU A 426 1 35 HELIX 3 AA3 ILE A 437 TYR A 448 1 12 HELIX 4 AA4 TYR A 448 LEU A 455 1 8 HELIX 5 AA5 ASP A 472 ARG A 489 1 18 HELIX 6 AA6 LEU A 547 GLU A 558 1 12 HELIX 7 AA7 LEU B 356 ASP B 387 1 32 HELIX 8 AA8 GLU B 392 GLU B 426 1 35 HELIX 9 AA9 ILE B 437 GLY B 456 1 20 HELIX 10 AB1 ASP B 472 TYR B 490 1 19 HELIX 11 AB2 GLY B 546 HIS B 559 1 14 SHEET 1 AA1 2 GLU A 433 PRO A 436 0 SHEET 2 AA1 2 VAL A 468 TYR A 471 -1 O TRP A 469 N GLN A 435 SHEET 1 AA2 5 ASN A 458 PHE A 461 0 SHEET 2 AA2 5 GLU A 496 GLU A 503 1 O ILE A 499 N THR A 460 SHEET 3 AA2 5 GLU A 507 ASP A 514 -1 O TYR A 511 N THR A 500 SHEET 4 AA2 5 GLY A 572 PRO A 580 -1 O LEU A 579 N ASP A 508 SHEET 5 AA2 5 SER A 562 GLU A 568 -1 N LYS A 566 O THR A 574 SHEET 1 AA3 2 GLU B 433 PRO B 436 0 SHEET 2 AA3 2 VAL B 468 TYR B 471 -1 O TRP B 469 N GLN B 435 SHEET 1 AA4 5 ASN B 458 ASN B 462 0 SHEET 2 AA4 5 GLU B 496 GLU B 503 1 O ILE B 499 N ASN B 462 SHEET 3 AA4 5 GLU B 507 ASP B 514 -1 O TYR B 511 N THR B 500 SHEET 4 AA4 5 THR B 573 PRO B 580 -1 O ILE B 577 N LEU B 510 SHEET 5 AA4 5 SER B 562 SER B 567 -1 N ASP B 564 O ILE B 576 SSBOND 1 CYS A 464 CYS A 501 1555 1555 2.11 SSBOND 2 CYS B 464 CYS B 501 1555 1555 2.01 CISPEP 1 GLY B 544 THR B 545 0 -0.79 SITE 1 AC1 5 LEU B 417 ALA B 421 ASP B 424 LEU B 547 SITE 2 AC1 5 HOH B 800 CRYST1 61.212 58.952 70.860 90.00 102.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016337 0.000000 0.003731 0.00000 SCALE2 0.000000 0.016963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014476 0.00000