HEADER HYDROLASE 15-JUN-19 6PC2 TITLE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI PPX/GPPA IN COMPLEX WITH GNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANOSINE PENTAPHOSPHATE PHOSPHOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN G27); SOURCE 3 ORGANISM_TAXID: 563041; SOURCE 4 STRAIN: G27; SOURCE 5 GENE: HPG27_257; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PPPGPP, PPGPP, PPX, GPPA, POLYPHOSPHATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SONG,C.WANG,G.X.SHAW,X.JI REVDAT 3 11-OCT-23 6PC2 1 LINK REVDAT 2 20-MAY-20 6PC2 1 JRNL REVDAT 1 20-NOV-19 6PC2 0 JRNL AUTH H.SONG,M.N.DHARMASENA,C.WANG,G.X.SHAW,S.CHERRY,J.E.TROPEA, JRNL AUTH 2 D.J.JIN,X.JI JRNL TITL STRUCTURE AND ACTIVITY OF PPX/GPPA HOMOLOGS FROM ESCHERICHIA JRNL TITL 2 COLI AND HELICOBACTER PYLORI. JRNL REF FEBS J. V. 287 1865 2020 JRNL REFN ISSN 1742-464X JRNL PMID 31679177 JRNL DOI 10.1111/FEBS.15120 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3352: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.258 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.350 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8868 - 6.9571 0.99 1622 148 0.1688 0.2101 REMARK 3 2 6.9571 - 5.5286 1.00 1585 143 0.2361 0.2592 REMARK 3 3 5.5286 - 4.8316 1.00 1578 145 0.2299 0.2631 REMARK 3 4 4.8316 - 4.3907 1.00 1548 141 0.2243 0.3135 REMARK 3 5 4.3907 - 4.0765 1.00 1575 144 0.2580 0.3106 REMARK 3 6 4.0765 - 3.8364 1.00 1581 143 0.2843 0.3468 REMARK 3 7 3.8364 - 3.6445 1.00 1559 143 0.3070 0.3842 REMARK 3 8 3.6445 - 3.4860 1.00 1558 141 0.3219 0.4005 REMARK 3 9 3.4860 - 3.3519 1.00 1554 142 0.3207 0.3767 REMARK 3 10 3.3519 - 3.2363 1.00 1587 145 0.3376 0.4550 REMARK 3 11 3.2363 - 3.1352 1.00 1550 142 0.3639 0.4801 REMARK 3 12 3.1352 - 3.0456 1.00 1570 142 0.3622 0.4531 REMARK 3 13 3.0456 - 2.9655 1.00 1559 142 0.3665 0.4112 REMARK 3 14 2.9655 - 2.8931 0.96 1504 138 0.3504 0.3854 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.590 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7838 REMARK 3 ANGLE : 0.495 10556 REMARK 3 CHIRALITY : 0.041 1222 REMARK 3 PLANARITY : 0.005 1288 REMARK 3 DIHEDRAL : 9.894 4826 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3HI0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M POTASSIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.50800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.23750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.50800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.23750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 MET B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 ALA B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 88 30.61 -96.51 REMARK 500 LYS A 153 -62.62 -95.44 REMARK 500 GLU A 255 0.33 -69.49 REMARK 500 LEU A 319 75.79 -158.40 REMARK 500 PHE A 401 35.64 -99.43 REMARK 500 GLU A 451 -169.82 -118.10 REMARK 500 ASP B 88 30.47 -96.14 REMARK 500 ALA B 102 -60.14 -91.14 REMARK 500 LYS B 153 -61.40 -96.24 REMARK 500 ARG B 256 43.94 -107.99 REMARK 500 LEU B 319 75.70 -157.28 REMARK 500 PHE B 401 35.16 -98.34 REMARK 500 GLU B 451 -135.43 -128.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 368 O REMARK 620 2 GNP A 505 O2B 146.8 REMARK 620 3 GNP A 505 O1A 95.6 63.6 REMARK 620 4 GNP A 505 O1G 68.1 87.2 94.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 502 O4 REMARK 620 2 HOH A 603 O 73.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 368 O REMARK 620 2 GNP B 502 O1G 70.2 REMARK 620 3 GNP B 502 O1A 84.9 90.1 REMARK 620 4 GNP B 502 O2B 138.5 84.0 62.6 REMARK 620 5 HOH B 606 O 110.4 174.9 84.9 92.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 B 504 O4 REMARK 620 2 HOH B 604 O 56.4 REMARK 620 3 HOH B 607 O 80.5 127.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 505 DBREF 6PC2 A 2 484 UNP B5ZA44 B5ZA44_HELPG 2 484 DBREF 6PC2 B 2 484 UNP B5ZA44 B5ZA44_HELPG 2 484 SEQADV 6PC2 MET A -10 UNP B5ZA44 INITIATING METHIONINE SEQADV 6PC2 ARG A -9 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 GLY A -8 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 SER A -7 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS A -6 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS A -5 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS A -4 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS A -3 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS A -2 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS A -1 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 GLY A 0 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 SER A 1 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 MET B -10 UNP B5ZA44 INITIATING METHIONINE SEQADV 6PC2 ARG B -9 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 GLY B -8 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 SER B -7 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS B -6 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS B -5 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS B -4 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS B -3 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS B -2 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 HIS B -1 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 GLY B 0 UNP B5ZA44 EXPRESSION TAG SEQADV 6PC2 SER B 1 UNP B5ZA44 EXPRESSION TAG SEQRES 1 A 495 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 495 LYS ILE THR THR VAL ILE ASP ILE GLY SER ASN SER VAL SEQRES 3 A 495 ARG LEU ALA VAL PHE LYS LYS THR SER GLN PHE GLY PHE SEQRES 4 A 495 TYR LEU LEU PHE GLU THR LYS SER LYS VAL ARG ILE SER SEQRES 5 A 495 GLU GLY CYS TYR ALA PHE ASN GLY ILE LEU GLN GLU ILE SEQRES 6 A 495 PRO MET GLN ARG ALA VAL LYS ALA LEU SER GLU PHE LYS SEQRES 7 A 495 GLU ILE ALA LEU LYS TYR LYS SER LYS LYS ILE LEU CYS SEQRES 8 A 495 VAL ALA THR SER ALA VAL ARG ASP ALA PRO ASN ARG LEU SEQRES 9 A 495 GLU PHE VAL ALA ARG VAL LYS LYS ALA CYS GLY LEU GLN SEQRES 10 A 495 ILE LYS ILE ILE ASP GLY GLN LYS GLU ALA LEU TYR GLY SEQRES 11 A 495 GLY ILE ALA CYS ALA ASN LEU LEU HIS LYS ASN SER GLY SEQRES 12 A 495 ILE THR ILE ASP ILE GLY GLY GLY SER THR GLU CYS ALA SEQRES 13 A 495 LEU ILE GLU LYS GLY LYS ILE LYS ASP LEU ILE SER LEU SEQRES 14 A 495 ASP VAL GLY THR ILE ARG ILE LYS GLU MET PHE LEU ASP SEQRES 15 A 495 LYS ASP LEU ASP VAL LYS LEU ALA LYS ALA PHE ILE GLN SEQRES 16 A 495 LYS GLU VAL SER LYS LEU PRO PHE LYS HIS LYS ASN ALA SEQRES 17 A 495 PHE GLY VAL GLY GLY THR ILE ARG ALA LEU SER LYS VAL SEQRES 18 A 495 LEU MET LYS ARG PHE ASP TYR PRO ILE ASP SER LEU HIS SEQRES 19 A 495 GLY TYR GLU ILE ASP ALA HIS LYS ASN LEU ALA PHE ILE SEQRES 20 A 495 GLU LYS ILE VAL MET LEU LYS GLU ASP GLN LEU ARG LEU SEQRES 21 A 495 LEU GLY VAL ASN GLU GLU ARG LEU ASP SER ILE ARG SER SEQRES 22 A 495 GLY ALA LEU ILE LEU SER VAL VAL LEU GLU HIS LEU LYS SEQRES 23 A 495 THR SER LEU MET ILE THR SER GLY VAL GLY VAL ARG GLU SEQRES 24 A 495 GLY VAL PHE LEU SER ASP LEU LEU ARG ASN HIS TYR HIS SEQRES 25 A 495 LYS PHE PRO PRO ASN ILE ASN PRO SER LEU ILE SER LEU SEQRES 26 A 495 LYS ASP ARG PHE LEU PRO HIS GLU LYS HIS SER GLN LYS SEQRES 27 A 495 VAL LYS LYS GLU CYS VAL LYS LEU PHE GLU ALA LEU SER SEQRES 28 A 495 PRO LEU HIS LYS ILE ASP GLU LYS TYR LEU PHE HIS LEU SEQRES 29 A 495 LYS ILE ALA GLY GLU LEU ALA SER MET GLY LYS ILE LEU SEQRES 30 A 495 SER VAL TYR LEU ALA HIS LYS HIS SER ALA TYR PHE ILE SEQRES 31 A 495 LEU ASN ALA LEU SER TYR GLY PHE SER HIS GLN ASP ARG SEQRES 32 A 495 ALA ILE ILE CYS LEU LEU ALA GLN PHE SER HIS LYS LYS SEQRES 33 A 495 ILE PRO LYS ASP ASN ALA ILE ALA HIS MET SER ALA MET SEQRES 34 A 495 MET PRO SER LEU LEU THR LEU GLN TRP LEU SER PHE ILE SEQRES 35 A 495 LEU SER LEU ALA GLU ASN LEU CYS LEU THR ASP SER HIS SEQRES 36 A 495 HIS LEU LYS TYR THR LEU GLU LYS ASN LYS LEU VAL ILE SEQRES 37 A 495 HIS SER ASN ASP ALA LEU TYR LEU ALA LYS GLU MET LEU SEQRES 38 A 495 PRO LYS LEU VAL LYS PRO ILE PRO LEU THR ILE GLU PHE SEQRES 39 A 495 ALA SEQRES 1 B 495 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 B 495 LYS ILE THR THR VAL ILE ASP ILE GLY SER ASN SER VAL SEQRES 3 B 495 ARG LEU ALA VAL PHE LYS LYS THR SER GLN PHE GLY PHE SEQRES 4 B 495 TYR LEU LEU PHE GLU THR LYS SER LYS VAL ARG ILE SER SEQRES 5 B 495 GLU GLY CYS TYR ALA PHE ASN GLY ILE LEU GLN GLU ILE SEQRES 6 B 495 PRO MET GLN ARG ALA VAL LYS ALA LEU SER GLU PHE LYS SEQRES 7 B 495 GLU ILE ALA LEU LYS TYR LYS SER LYS LYS ILE LEU CYS SEQRES 8 B 495 VAL ALA THR SER ALA VAL ARG ASP ALA PRO ASN ARG LEU SEQRES 9 B 495 GLU PHE VAL ALA ARG VAL LYS LYS ALA CYS GLY LEU GLN SEQRES 10 B 495 ILE LYS ILE ILE ASP GLY GLN LYS GLU ALA LEU TYR GLY SEQRES 11 B 495 GLY ILE ALA CYS ALA ASN LEU LEU HIS LYS ASN SER GLY SEQRES 12 B 495 ILE THR ILE ASP ILE GLY GLY GLY SER THR GLU CYS ALA SEQRES 13 B 495 LEU ILE GLU LYS GLY LYS ILE LYS ASP LEU ILE SER LEU SEQRES 14 B 495 ASP VAL GLY THR ILE ARG ILE LYS GLU MET PHE LEU ASP SEQRES 15 B 495 LYS ASP LEU ASP VAL LYS LEU ALA LYS ALA PHE ILE GLN SEQRES 16 B 495 LYS GLU VAL SER LYS LEU PRO PHE LYS HIS LYS ASN ALA SEQRES 17 B 495 PHE GLY VAL GLY GLY THR ILE ARG ALA LEU SER LYS VAL SEQRES 18 B 495 LEU MET LYS ARG PHE ASP TYR PRO ILE ASP SER LEU HIS SEQRES 19 B 495 GLY TYR GLU ILE ASP ALA HIS LYS ASN LEU ALA PHE ILE SEQRES 20 B 495 GLU LYS ILE VAL MET LEU LYS GLU ASP GLN LEU ARG LEU SEQRES 21 B 495 LEU GLY VAL ASN GLU GLU ARG LEU ASP SER ILE ARG SER SEQRES 22 B 495 GLY ALA LEU ILE LEU SER VAL VAL LEU GLU HIS LEU LYS SEQRES 23 B 495 THR SER LEU MET ILE THR SER GLY VAL GLY VAL ARG GLU SEQRES 24 B 495 GLY VAL PHE LEU SER ASP LEU LEU ARG ASN HIS TYR HIS SEQRES 25 B 495 LYS PHE PRO PRO ASN ILE ASN PRO SER LEU ILE SER LEU SEQRES 26 B 495 LYS ASP ARG PHE LEU PRO HIS GLU LYS HIS SER GLN LYS SEQRES 27 B 495 VAL LYS LYS GLU CYS VAL LYS LEU PHE GLU ALA LEU SER SEQRES 28 B 495 PRO LEU HIS LYS ILE ASP GLU LYS TYR LEU PHE HIS LEU SEQRES 29 B 495 LYS ILE ALA GLY GLU LEU ALA SER MET GLY LYS ILE LEU SEQRES 30 B 495 SER VAL TYR LEU ALA HIS LYS HIS SER ALA TYR PHE ILE SEQRES 31 B 495 LEU ASN ALA LEU SER TYR GLY PHE SER HIS GLN ASP ARG SEQRES 32 B 495 ALA ILE ILE CYS LEU LEU ALA GLN PHE SER HIS LYS LYS SEQRES 33 B 495 ILE PRO LYS ASP ASN ALA ILE ALA HIS MET SER ALA MET SEQRES 34 B 495 MET PRO SER LEU LEU THR LEU GLN TRP LEU SER PHE ILE SEQRES 35 B 495 LEU SER LEU ALA GLU ASN LEU CYS LEU THR ASP SER HIS SEQRES 36 B 495 HIS LEU LYS TYR THR LEU GLU LYS ASN LYS LEU VAL ILE SEQRES 37 B 495 HIS SER ASN ASP ALA LEU TYR LEU ALA LYS GLU MET LEU SEQRES 38 B 495 PRO LYS LEU VAL LYS PRO ILE PRO LEU THR ILE GLU PHE SEQRES 39 B 495 ALA HET MG A 501 1 HET PO4 A 502 5 HET PO4 A 503 5 HET MG A 504 1 HET GNP A 505 32 HET MG B 501 1 HET GNP B 502 32 HET MG B 503 1 HET PO4 B 504 5 HET PO4 B 505 5 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 3 MG 4(MG 2+) FORMUL 4 PO4 4(O4 P 3-) FORMUL 7 GNP 2(C10 H17 N6 O13 P3) FORMUL 13 HOH *14(H2 O) HELIX 1 AA1 GLN A 52 TYR A 73 1 22 HELIX 2 AA2 THR A 83 ASP A 88 1 6 HELIX 3 AA3 ASN A 91 CYS A 103 1 13 HELIX 4 AA4 ASP A 111 ALA A 124 1 14 HELIX 5 AA5 GLY A 161 PHE A 169 1 9 HELIX 6 AA6 LEU A 170 ASP A 173 5 4 HELIX 7 AA7 ASP A 175 SER A 188 1 14 HELIX 8 AA8 GLY A 201 PHE A 215 1 15 HELIX 9 AA9 ALA A 229 VAL A 240 1 12 HELIX 10 AB1 LYS A 243 LEU A 250 1 8 HELIX 11 AB2 ASN A 253 GLU A 255 5 3 HELIX 12 AB3 ARG A 256 LYS A 275 1 20 HELIX 13 AB4 GLY A 285 LEU A 296 1 12 HELIX 14 AB5 ARG A 297 TYR A 300 5 4 HELIX 15 AB6 ASN A 308 LEU A 319 1 12 HELIX 16 AB7 GLU A 322 ALA A 338 1 17 HELIX 17 AB8 LEU A 339 LYS A 344 1 6 HELIX 18 AB9 ASP A 346 LYS A 348 5 3 HELIX 19 AC1 TYR A 349 ALA A 360 1 12 HELIX 20 AC2 SER A 361 LEU A 366 5 6 HELIX 21 AC3 LEU A 370 LEU A 383 1 14 HELIX 22 AC4 SER A 388 PHE A 401 1 14 HELIX 23 AC5 SER A 421 CYS A 439 1 19 HELIX 24 AC6 LEU A 463 MET A 469 1 7 HELIX 25 AC7 GLN B 52 TYR B 73 1 22 HELIX 26 AC8 THR B 83 ASP B 88 1 6 HELIX 27 AC9 ASN B 91 CYS B 103 1 13 HELIX 28 AD1 ASP B 111 ALA B 124 1 14 HELIX 29 AD2 GLY B 161 PHE B 169 1 9 HELIX 30 AD3 LEU B 170 ASP B 173 5 4 HELIX 31 AD4 ASP B 175 SER B 188 1 14 HELIX 32 AD5 GLY B 201 PHE B 215 1 15 HELIX 33 AD6 ALA B 229 ILE B 239 1 11 HELIX 34 AD7 VAL B 240 LEU B 242 5 3 HELIX 35 AD8 LYS B 243 LEU B 250 1 8 HELIX 36 AD9 SER B 259 LYS B 275 1 17 HELIX 37 AE1 GLY B 285 LEU B 296 1 12 HELIX 38 AE2 ASN B 308 LEU B 319 1 12 HELIX 39 AE3 GLU B 322 ALA B 338 1 17 HELIX 40 AE4 LEU B 339 LYS B 344 1 6 HELIX 41 AE5 ASP B 346 LYS B 348 5 3 HELIX 42 AE6 TYR B 349 ALA B 360 1 12 HELIX 43 AE7 SER B 361 LEU B 366 5 6 HELIX 44 AE8 LEU B 370 LEU B 383 1 14 HELIX 45 AE9 SER B 388 PHE B 401 1 14 HELIX 46 AF1 SER B 421 CYS B 439 1 19 HELIX 47 AF2 LEU B 463 MET B 469 1 7 SHEET 1 AA1 5 PHE A 28 THR A 34 0 SHEET 2 AA1 5 VAL A 15 LYS A 22 -1 N VAL A 19 O PHE A 32 SHEET 3 AA1 5 ILE A 4 ILE A 10 -1 N THR A 5 O PHE A 20 SHEET 4 AA1 5 LYS A 77 ALA A 82 1 O VAL A 81 N ILE A 10 SHEET 5 AA1 5 ILE A 107 ILE A 109 1 O LYS A 108 N CYS A 80 SHEET 1 AA2 6 LYS A 151 LEU A 158 0 SHEET 2 AA2 6 THR A 142 GLU A 148 -1 N GLU A 148 O LYS A 151 SHEET 3 AA2 6 SER A 131 ILE A 137 -1 N GLY A 132 O ILE A 147 SHEET 4 AA2 6 ASN A 196 VAL A 200 1 O VAL A 200 N ILE A 135 SHEET 5 AA2 6 LEU A 278 THR A 281 1 O ILE A 280 N ALA A 197 SHEET 6 AA2 6 GLU A 226 ASP A 228 -1 N ILE A 227 O MET A 279 SHEET 1 AA3 3 LYS A 447 LEU A 450 0 SHEET 2 AA3 3 LYS A 454 HIS A 458 -1 O HIS A 458 N LYS A 447 SHEET 3 AA3 3 THR A 480 ALA A 484 1 O THR A 480 N LEU A 455 SHEET 1 AA4 5 PHE B 28 THR B 34 0 SHEET 2 AA4 5 VAL B 15 LYS B 22 -1 N VAL B 19 O LEU B 31 SHEET 3 AA4 5 ILE B 4 ILE B 10 -1 N THR B 5 O PHE B 20 SHEET 4 AA4 5 LYS B 77 ALA B 82 1 O VAL B 81 N ILE B 10 SHEET 5 AA4 5 ILE B 107 ILE B 109 1 O LYS B 108 N CYS B 80 SHEET 1 AA5 6 LYS B 151 LEU B 158 0 SHEET 2 AA5 6 THR B 142 GLU B 148 -1 N GLU B 148 O LYS B 151 SHEET 3 AA5 6 SER B 131 ILE B 137 -1 N GLY B 132 O ILE B 147 SHEET 4 AA5 6 ASN B 196 VAL B 200 1 O VAL B 200 N ILE B 135 SHEET 5 AA5 6 LEU B 278 THR B 281 1 O ILE B 280 N ALA B 197 SHEET 6 AA5 6 GLU B 226 ASP B 228 -1 N ILE B 227 O MET B 279 SHEET 1 AA6 3 LYS B 447 LEU B 450 0 SHEET 2 AA6 3 LYS B 454 HIS B 458 -1 O HIS B 458 N LYS B 447 SHEET 3 AA6 3 THR B 480 ALA B 484 1 O THR B 480 N LEU B 455 LINK O VAL A 368 MG MG A 504 1555 1555 2.00 LINK MG MG A 501 O4 PO4 A 502 1555 1555 2.65 LINK MG MG A 501 O HOH A 603 1555 1555 2.23 LINK MG MG A 504 O2B GNP A 505 1555 1555 1.96 LINK MG MG A 504 O1A GNP A 505 1555 1555 2.86 LINK MG MG A 504 O1G GNP A 505 1555 1555 2.62 LINK O VAL B 368 MG MG B 501 1555 1555 2.07 LINK MG MG B 501 O1G GNP B 502 1555 1555 2.59 LINK MG MG B 501 O1A GNP B 502 1555 1555 2.89 LINK MG MG B 501 O2B GNP B 502 1555 1555 2.07 LINK MG MG B 501 O HOH B 606 1555 1555 2.05 LINK MG MG B 503 O4 PO4 B 504 1555 1555 2.75 LINK MG MG B 503 O HOH B 604 1555 1555 2.89 LINK MG MG B 503 O HOH B 607 1555 1555 2.16 SITE 1 AC1 5 GLU A 115 ASP A 136 VAL A 286 PO4 A 502 SITE 2 AC1 5 HOH A 603 SITE 1 AC2 10 SER A 12 THR A 83 GLU A 115 GLY A 138 SITE 2 AC2 10 GLY A 139 GLY A 140 SER A 141 MG A 501 SITE 3 AC2 10 HOH A 601 HOH A 603 SITE 1 AC3 7 SER A 14 ARG A 16 GLY A 138 GLY A 139 SITE 2 AC3 7 GLY A 202 THR A 203 ARG A 256 SITE 1 AC4 2 VAL A 368 GNP A 505 SITE 1 AC5 12 VAL A 368 TYR A 369 LEU A 370 ALA A 371 SITE 2 AC5 12 HIS A 372 MG A 504 GLU B 33 LYS B 35 SITE 3 AC5 12 LEU B 222 GLY B 283 ARG B 287 HOH B 602 SITE 1 AC6 3 VAL B 368 GNP B 502 HOH B 606 SITE 1 AC7 11 GLU A 33 LEU A 222 GLY A 283 ARG A 287 SITE 2 AC7 11 VAL B 368 TYR B 369 LEU B 370 ALA B 371 SITE 3 AC7 11 HIS B 372 MG B 501 HOH B 606 SITE 1 AC8 6 GLU B 115 ASP B 136 VAL B 286 PO4 B 504 SITE 2 AC8 6 HOH B 604 HOH B 607 SITE 1 AC9 9 SER B 12 THR B 83 GLU B 115 GLY B 138 SITE 2 AC9 9 GLY B 139 GLY B 140 SER B 141 MG B 503 SITE 3 AC9 9 HOH B 604 SITE 1 AD1 6 SER B 14 ARG B 16 GLY B 138 GLY B 202 SITE 2 AD1 6 THR B 203 ARG B 256 CRYST1 113.016 94.475 107.197 90.00 108.53 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008848 0.000000 0.002965 0.00000 SCALE2 0.000000 0.010585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009838 0.00000