HEADER VIRAL PROTEIN 18-JUN-19 6PCX TITLE CRYSTAL STRUCTURE OF A H5N1 INFLUENZA VIRUS HEMAGGLUTININ AT PH 6.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/MALLARD/VIETNAM/3/2003(H5N1)); SOURCE 4 ORGANISM_TAXID: 380863; SOURCE 5 STRAIN: A/MALLARD/VIETNAM/3/2003(H5N1); SOURCE 6 GENE: HA; SOURCE 7 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 8 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS INFLUENZA, H5, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ANTANASIJEVIC,M.A.DURST,A.LAVIE,M.CAFFREY REVDAT 5 11-OCT-23 6PCX 1 HETSYN REVDAT 4 29-JUL-20 6PCX 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 22-JAN-20 6PCX 1 JRNL REVDAT 2 20-NOV-19 6PCX 1 JRNL REVDAT 1 13-NOV-19 6PCX 0 JRNL AUTH A.ANTANASIJEVIC,M.A.DURST,A.LAVIE,M.CAFFREY JRNL TITL IDENTIFICATION OF A PH SENSOR IN INFLUENZA HEMAGGLUTININ JRNL TITL 2 USING X-RAY CRYSTALLOGRAPHY. JRNL REF J.STRUCT.BIOL. V. 209 07412 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 31689502 JRNL DOI 10.1016/J.JSB.2019.107412 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 51861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2763 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3626 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.4120 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.4470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3932 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.72000 REMARK 3 B22 (A**2) : 1.72000 REMARK 3 B33 (A**2) : -5.57000 REMARK 3 B12 (A**2) : 0.86000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.161 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4162 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3646 ; 0.004 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5646 ; 1.542 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8526 ; 1.323 ; 1.597 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 7.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;35.406 ;23.894 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 706 ;18.039 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4591 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 830 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1966 ; 4.699 ; 6.290 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1965 ; 4.699 ; 6.288 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2455 ; 6.608 ; 9.422 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2456 ; 6.607 ; 9.424 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2196 ; 6.484 ; 7.080 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2197 ; 6.483 ; 7.082 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3189 ; 9.221 ;10.397 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4394 ;12.577 ;72.935 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4395 ;12.583 ;72.938 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6PCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.440 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.22 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2FK0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CACODYLATE, PH 6.0, 200 MM REMARK 280 SODIUM CHLORIDE, 2 M AMMONIUM SULFATE, 10% GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 54.26850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.33193 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 139.93000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 54.26850 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.33193 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 139.93000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 54.26850 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.33193 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 139.93000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 54.26850 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.33193 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 139.93000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 54.26850 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.33193 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 139.93000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 54.26850 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.33193 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 139.93000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.66387 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 279.86000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 62.66387 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 279.86000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 62.66387 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 279.86000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 62.66387 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 279.86000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 62.66387 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 279.86000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 62.66387 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 279.86000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -513.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -54.26850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 93.99580 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -108.53700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A1109 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A1110 LIES ON A SPECIAL POSITION. REMARK 375 O4 SO4 A1110 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1312 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1329 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A -4 REMARK 465 LEU A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 465 HIS A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 PHE A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 PRO A 857 REMARK 465 GLN A 858 REMARK 465 ARG A 859 REMARK 465 GLU A 860 REMARK 465 ARG A 861 REMARK 465 ARG A 862 REMARK 465 ARG A 863 REMARK 465 LYS A 864 REMARK 465 LYS A 865 REMARK 465 ARG A 866 REMARK 465 GLY A 867 REMARK 465 LEU A 868 REMARK 465 PHE A 869 REMARK 465 GLY A 870 REMARK 465 ILE A 1039 REMARK 465 SER A 1040 REMARK 465 GLY A 1041 REMARK 465 SER A 1042 REMARK 465 ARG A 1043 REMARK 465 LEU A 1044 REMARK 465 VAL A 1045 REMARK 465 PRO A 1046 REMARK 465 ARG A 1047 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 26.23 -141.03 REMARK 500 ASP A 78 76.64 -100.16 REMARK 500 VAL A 83 91.32 -172.43 REMARK 500 ASP A 98 -112.63 -119.64 REMARK 500 CYS A 145 65.16 -112.47 REMARK 500 TYR A 147 -125.80 -108.42 REMARK 500 SER A 152 -158.85 -147.68 REMARK 500 PHE A 154 132.59 -34.07 REMARK 500 ASN A 164 -111.14 53.92 REMARK 500 GLN A 202 -50.00 65.62 REMARK 500 THR A 212 -160.02 -123.51 REMARK 500 PRO A 245 3.31 -64.96 REMARK 500 SER A 272 -123.54 -145.55 REMARK 500 ASN A 283 -9.39 65.27 REMARK 500 HIS A 305 137.93 -170.10 REMARK 500 SER A 318 145.24 -173.10 REMARK 500 MET A 883 73.20 -65.49 REMARK 500 ARG A 993 -126.68 43.94 REMARK 500 REMARK 500 REMARK: NULL DBREF 6PCX A 11 1041 UNP Q1KHJ9 Q1KHJ9_9INFA 17 521 SEQADV 6PCX LEU A -4 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX LEU A -3 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX ALA A -2 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX ALA A -1 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX ALA A 0 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX ALA A 1 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX HIS A 2 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX SER A 3 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX ALA A 4 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX PHE A 5 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX ALA A 6 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX ALA A 7 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX ASP A 8 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX PRO A 9 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX GLY A 10 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX SER A 1042 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX ARG A 1043 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX LEU A 1044 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX VAL A 1045 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX PRO A 1046 UNP Q1KHJ9 EXPRESSION TAG SEQADV 6PCX ARG A 1047 UNP Q1KHJ9 EXPRESSION TAG SEQRES 1 A 526 LEU LEU ALA ALA ALA ALA HIS SER ALA PHE ALA ALA ASP SEQRES 2 A 526 PRO GLY ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN ASN SEQRES 3 A 526 SER THR GLU GLN VAL ASP THR ILE MET GLU LYS ASN VAL SEQRES 4 A 526 THR VAL THR HIS ALA GLN ASP ILE LEU GLU LYS LYS HIS SEQRES 5 A 526 ASN GLY LYS LEU CYS ASP LEU ASP GLY VAL LYS PRO LEU SEQRES 6 A 526 ILE LEU ARG ASP CYS SER VAL ALA GLY TRP LEU LEU GLY SEQRES 7 A 526 ASN PRO MET CYS ASP GLU PHE ILE ASN VAL PRO GLU TRP SEQRES 8 A 526 SER TYR ILE VAL GLU LYS ALA ASN PRO VAL ASN ASP LEU SEQRES 9 A 526 CYS TYR PRO GLY ASP PHE ASN ASP TYR GLU GLU LEU LYS SEQRES 10 A 526 HIS LEU LEU SER ARG ILE ASN HIS PHE GLU LYS ILE GLN SEQRES 11 A 526 ILE ILE PRO LYS SER SER TRP SER SER HIS GLU ALA SER SEQRES 12 A 526 LEU GLY VAL SER SER ALA CYS PRO TYR GLN GLY LYS SER SEQRES 13 A 526 SER PHE PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASN SEQRES 14 A 526 SER THR TYR PRO THR ILE LYS ARG SER TYR ASN ASN THR SEQRES 15 A 526 ASN GLN GLU ASP LEU LEU VAL LEU TRP GLY ILE HIS HIS SEQRES 16 A 526 PRO ASN ASP ALA ALA GLU GLN THR LYS LEU TYR GLN ASN SEQRES 17 A 526 PRO THR THR TYR ILE SER VAL GLY THR SER THR LEU ASN SEQRES 18 A 526 GLN ARG LEU VAL PRO ARG ILE ALA THR ARG SER LYS VAL SEQRES 19 A 526 ASN GLY GLN SER GLY ARG MET GLU PHE PHE TRP THR ILE SEQRES 20 A 526 LEU LYS PRO ASN ASP ALA ILE ASN PHE GLU SER ASN GLY SEQRES 21 A 526 ASN PHE ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS SEQRES 22 A 526 LYS GLY ASP SER THR ILE MET LYS SER GLU LEU GLU TYR SEQRES 23 A 526 GLY ASN CYS ASN THR LYS CYS GLN THR PRO MET GLY ALA SEQRES 24 A 526 ILE ASN SER SER MET PRO PHE HIS ASN ILE HIS PRO LEU SEQRES 25 A 526 THR ILE GLY GLU CYS PRO LYS TYR VAL LYS SER ASN ARG SEQRES 26 A 526 LEU VAL LEU ALA THR GLY LEU ARG ASN SER PRO GLN ARG SEQRES 27 A 526 GLU ARG ARG ARG LYS LYS ARG GLY LEU PHE GLY ALA ILE SEQRES 28 A 526 ALA GLY PHE ILE GLU GLY GLY TRP GLN GLY MET VAL ASP SEQRES 29 A 526 GLY TRP TYR GLY TYR HIS HIS SER ASN GLU GLN GLY SER SEQRES 30 A 526 GLY TYR ALA ALA ASP LYS GLU SER THR GLN LYS ALA ILE SEQRES 31 A 526 ASP GLY VAL THR ASN LYS VAL ASN SER ILE ILE ASP LYS SEQRES 32 A 526 MET ASN THR GLN PHE GLU ALA VAL GLY ARG GLU PHE ASN SEQRES 33 A 526 ASN LEU GLU ARG ARG ILE GLU ASN LEU ASN LYS LYS MET SEQRES 34 A 526 GLU ASP GLY PHE LEU ASP VAL TRP THR TYR ASN ALA GLU SEQRES 35 A 526 LEU LEU VAL LEU MET GLU ASN GLU ARG THR LEU ASP PHE SEQRES 36 A 526 HIS ASP SER ASN VAL LYS ASN LEU TYR ASP LYS VAL ARG SEQRES 37 A 526 LEU GLN LEU ARG ASP ASN ALA LYS GLU LEU GLY ASN GLY SEQRES 38 A 526 CYS PHE GLU PHE TYR HIS LYS CYS ASP ASN GLU CYS MET SEQRES 39 A 526 GLU SER VAL ARG ASN GLY THR TYR ASP TYR PRO GLN TYR SEQRES 40 A 526 SER GLU GLU ALA ARG LEU LYS ARG GLU GLU ILE SER GLY SEQRES 41 A 526 SER ARG LEU VAL PRO ARG HET SO4 A1101 5 HET SO4 A1102 5 HET SO4 A1103 5 HET SO4 A1104 5 HET SO4 A1105 5 HET SO4 A1106 5 HET SO4 A1107 5 HET SO4 A1108 5 HET SO4 A1109 5 HET SO4 A1110 5 HET SO4 A1111 5 HET SO4 A1112 5 HET GOL A1113 6 HET GOL A1114 6 HET GOL A1115 6 HET NAG A1116 14 HET NAG A1117 14 HET NAG A1118 14 HET NAG A1119 14 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 SO4 12(O4 S 2-) FORMUL 14 GOL 3(C3 H8 O3) FORMUL 17 NAG 4(C8 H15 N O6) FORMUL 21 HOH *129(H2 O) HELIX 1 AA1 SER A 66 GLY A 73 1 8 HELIX 2 AA2 ASP A 107 SER A 116 1 10 HELIX 3 AA3 PRO A 128 TRP A 132 5 5 HELIX 4 AA4 ASP A 193 GLN A 202 1 10 HELIX 5 AA5 GLY A 874 GLY A 878 5 5 HELIX 6 AA6 ASP A 903 LYS A 924 1 22 HELIX 7 AA7 GLU A 940 ARG A 993 1 54 HELIX 8 AA8 ASP A 1011 ASN A 1020 1 10 HELIX 9 AA9 TYR A 1025 GLU A 1037 1 13 SHEET 1 AA1 5 GLY A 897 ALA A 902 0 SHEET 2 AA1 5 TYR A 888 ASN A 894 -1 N TYR A 890 O ALA A 901 SHEET 3 AA1 5 GLN A 12 TYR A 17 -1 N CYS A 14 O HIS A 891 SHEET 4 AA1 5 CYS A1003 PHE A1006 -1 O PHE A1004 N ILE A 13 SHEET 5 AA1 5 ALA A 996 GLU A 998 -1 N LYS A 997 O GLU A1005 SHEET 1 AA2 2 GLN A 25 VAL A 26 0 SHEET 2 AA2 2 VAL A 34 THR A 35 -1 O VAL A 34 N VAL A 26 SHEET 1 AA3 2 ALA A 39 ASP A 41 0 SHEET 2 AA3 2 VAL A 322 ALA A 324 -1 O LEU A 323 N GLN A 40 SHEET 1 AA4 3 LEU A 43 GLU A 44 0 SHEET 2 AA4 3 PHE A 301 HIS A 302 1 O PHE A 301 N GLU A 44 SHEET 3 AA4 3 LYS A 314 TYR A 315 1 O LYS A 314 N HIS A 302 SHEET 1 AA5 2 LEU A 51 LEU A 54 0 SHEET 2 AA5 2 TYR A 281 THR A 286 1 O CYS A 284 N ASP A 53 SHEET 1 AA6 3 LEU A 60 ILE A 61 0 SHEET 2 AA6 3 ILE A 89 GLU A 91 1 O VAL A 90 N LEU A 60 SHEET 3 AA6 3 ILE A 274 LYS A 276 1 O MET A 275 N ILE A 89 SHEET 1 AA7 5 GLY A 103 PHE A 105 0 SHEET 2 AA7 5 ARG A 235 LEU A 243 1 O PHE A 238 N ASP A 104 SHEET 3 AA7 5 ASP A 181 HIS A 190 -1 N LEU A 182 O LEU A 243 SHEET 4 AA7 5 TYR A 262 VAL A 267 -1 O TYR A 264 N LEU A 183 SHEET 5 AA7 5 HIS A 120 GLN A 125 -1 N GLU A 122 O LYS A 265 SHEET 1 AA8 5 GLY A 103 PHE A 105 0 SHEET 2 AA8 5 ARG A 235 LEU A 243 1 O PHE A 238 N ASP A 104 SHEET 3 AA8 5 ASP A 181 HIS A 190 -1 N LEU A 182 O LEU A 243 SHEET 4 AA8 5 PHE A 257 PRO A 260 -1 O ILE A 258 N GLY A 187 SHEET 5 AA8 5 VAL A 157 TRP A 159 -1 N VAL A 158 O ALA A 259 SHEET 1 AA9 2 SER A 142 PRO A 146 0 SHEET 2 AA9 2 SER A 151 SER A 152 -1 O SER A 152 N SER A 142 SHEET 1 AB1 4 ILE A 170 ASN A 175 0 SHEET 2 AB1 4 ALA A 248 SER A 253 -1 O PHE A 251 N ARG A 172 SHEET 3 AB1 4 ILE A 208 GLY A 211 -1 N SER A 209 O GLU A 252 SHEET 4 AB1 4 ASN A 216 LEU A 219 -1 O LEU A 219 N ILE A 208 SHEET 1 AB2 3 CYS A 288 GLN A 289 0 SHEET 2 AB2 3 ILE A 309 GLY A 310 -1 O ILE A 309 N GLN A 289 SHEET 3 AB2 3 GLU A 930 ALA A 931 -1 O GLU A 930 N GLY A 310 SSBOND 1 CYS A 14 CYS A 1003 1555 1555 2.07 SSBOND 2 CYS A 52 CYS A 284 1555 1555 2.05 SSBOND 3 CYS A 65 CYS A 77 1555 1555 2.05 SSBOND 4 CYS A 100 CYS A 145 1555 1555 2.11 SSBOND 5 CYS A 288 CYS A 312 1555 1555 2.06 SSBOND 6 CYS A 1010 CYS A 1014 1555 1555 2.09 LINK ND2 ASN A 33 C1 NAG A1116 1555 1555 1.45 LINK ND2 ASN A 164 C1 NAG A1119 1555 1555 1.44 LINK ND2 ASN A 175 C1 NAG A1117 1555 1555 1.43 LINK ND2 ASN A1020 C1 NAG A1118 1555 1555 1.45 CISPEP 1 ASP A 8 PRO A 9 0 -21.32 CRYST1 108.537 108.537 419.790 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009213 0.005319 0.000000 0.00000 SCALE2 0.000000 0.010639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002382 0.00000