HEADER OXIDOREDUCTASE/INHIBITOR 19-JUN-19 6PDH TITLE CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH PURIFIED PYRAZOLE 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: B0013 KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, OXIDOREDUCTASE-INHIBITOR KEYWDS 2 COMPLEX, REFILX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,M.BENTLEY,B.DOAK,M.J.SCANLON REVDAT 3 11-OCT-23 6PDH 1 REMARK REVDAT 2 11-NOV-20 6PDH 1 JRNL REVDAT 1 06-MAY-20 6PDH 0 JRNL AUTH M.R.BENTLEY,O.V.ILYICHOVA,G.WANG,M.L.WILLIAMS,G.SHARMA, JRNL AUTH 2 W.S.ALWAN,R.L.WHITEHOUSE,B.MOHANTY,P.J.SCAMMELLS,B.HERAS, JRNL AUTH 3 J.L.MARTIN,M.TOTSIKA,B.CAPUANO,B.C.DOAK,M.J.SCANLON JRNL TITL RAPID ELABORATION OF FRAGMENTS INTO LEADS BY X-RAY JRNL TITL 2 CRYSTALLOGRAPHIC SCREENING OF PARALLEL CHEMICAL LIBRARIES JRNL TITL 3 (REFIL X ). JRNL REF J.MED.CHEM. V. 63 6863 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32529824 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00111 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3211 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 34614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9000 - 4.4800 0.99 2827 157 0.1518 0.1736 REMARK 3 2 4.4800 - 3.5600 0.99 2773 126 0.1612 0.1929 REMARK 3 3 3.5600 - 3.1100 1.00 2757 143 0.2100 0.2809 REMARK 3 4 3.1100 - 2.8300 1.00 2739 152 0.2313 0.2890 REMARK 3 5 2.8300 - 2.6200 1.00 2748 139 0.2215 0.2929 REMARK 3 6 2.6200 - 2.4700 1.00 2750 143 0.2108 0.2632 REMARK 3 7 2.4700 - 2.3500 1.00 2740 140 0.2197 0.2644 REMARK 3 8 2.3500 - 2.2400 0.99 2729 122 0.2198 0.2722 REMARK 3 9 2.2400 - 2.1600 0.99 2691 165 0.2437 0.3197 REMARK 3 10 2.1600 - 2.0800 0.99 2709 144 0.2490 0.3151 REMARK 3 11 2.0800 - 2.0200 1.00 2710 147 0.2771 0.3233 REMARK 3 12 2.0200 - 1.9600 1.00 2727 136 0.3018 0.3362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.408 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3004 REMARK 3 ANGLE : 0.759 4083 REMARK 3 CHIRALITY : 0.045 446 REMARK 3 PLANARITY : 0.004 534 REMARK 3 DIHEDRAL : 4.256 2376 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6945 -8.8978 9.6564 REMARK 3 T TENSOR REMARK 3 T11: 0.5760 T22: 0.6275 REMARK 3 T33: 1.3003 T12: -0.0565 REMARK 3 T13: 0.2240 T23: -0.3943 REMARK 3 L TENSOR REMARK 3 L11: 3.1256 L22: 3.8897 REMARK 3 L33: 2.2856 L12: 0.2667 REMARK 3 L13: 1.3350 L23: -0.0311 REMARK 3 S TENSOR REMARK 3 S11: -0.0994 S12: 0.8416 S13: -0.4556 REMARK 3 S21: 0.3174 S22: 0.2795 S23: -0.3893 REMARK 3 S31: 0.3948 S32: -0.2626 S33: -0.1390 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7678 8.2278 13.5354 REMARK 3 T TENSOR REMARK 3 T11: 0.3907 T22: 0.5337 REMARK 3 T33: 0.4919 T12: 0.0970 REMARK 3 T13: 0.0465 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 2.9667 L22: 2.7663 REMARK 3 L33: 3.2404 L12: -0.7486 REMARK 3 L13: -0.6951 L23: -0.1033 REMARK 3 S TENSOR REMARK 3 S11: -0.2439 S12: 0.3626 S13: -0.6774 REMARK 3 S21: 0.0510 S22: -0.0177 S23: 0.2450 REMARK 3 S31: 0.1744 S32: -0.3618 S33: 0.2496 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1900 23.8288 20.6176 REMARK 3 T TENSOR REMARK 3 T11: 0.4383 T22: 0.4603 REMARK 3 T33: 0.3942 T12: 0.1892 REMARK 3 T13: -0.0090 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 2.3571 L22: 1.7628 REMARK 3 L33: 1.2494 L12: -0.3713 REMARK 3 L13: -0.7655 L23: 0.3451 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: -0.1750 S13: 0.2574 REMARK 3 S21: 0.1107 S22: 0.0129 S23: -0.0273 REMARK 3 S31: -0.1843 S32: -0.1631 S33: 0.0361 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6157 10.3349 22.8317 REMARK 3 T TENSOR REMARK 3 T11: 0.4285 T22: 0.5813 REMARK 3 T33: 0.6650 T12: 0.0545 REMARK 3 T13: 0.0921 T23: 0.0676 REMARK 3 L TENSOR REMARK 3 L11: 7.4965 L22: 3.3001 REMARK 3 L33: 4.6098 L12: -4.8609 REMARK 3 L13: 1.0312 L23: -1.4437 REMARK 3 S TENSOR REMARK 3 S11: -0.4015 S12: -0.3685 S13: -1.1299 REMARK 3 S21: 0.4581 S22: 0.1480 S23: 1.4100 REMARK 3 S31: 0.1353 S32: -0.7277 S33: 0.2544 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9121 -0.3458 10.7173 REMARK 3 T TENSOR REMARK 3 T11: 0.4379 T22: 0.5025 REMARK 3 T33: 0.8174 T12: 0.0130 REMARK 3 T13: 0.1131 T23: -0.1504 REMARK 3 L TENSOR REMARK 3 L11: 3.1045 L22: 1.8898 REMARK 3 L33: 1.8989 L12: 0.3466 REMARK 3 L13: -1.3908 L23: 0.0269 REMARK 3 S TENSOR REMARK 3 S11: -0.5363 S12: 0.5046 S13: -1.4714 REMARK 3 S21: 0.0534 S22: -0.0407 S23: 0.3570 REMARK 3 S31: 0.4402 S32: -0.3690 S33: 0.4742 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9509 17.3559 34.6500 REMARK 3 T TENSOR REMARK 3 T11: 0.3809 T22: 0.5242 REMARK 3 T33: 0.3365 T12: 0.0613 REMARK 3 T13: -0.0220 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.2882 L22: 2.7676 REMARK 3 L33: 5.2249 L12: -0.2243 REMARK 3 L13: -0.2381 L23: 0.9008 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: -0.2050 S13: -0.0482 REMARK 3 S21: 0.3572 S22: -0.2063 S23: -0.0528 REMARK 3 S31: 0.1029 S32: 0.5335 S33: 0.1159 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.6444 21.9586 24.2608 REMARK 3 T TENSOR REMARK 3 T11: 0.3546 T22: 0.5460 REMARK 3 T33: 0.4048 T12: 0.0694 REMARK 3 T13: 0.0099 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.2972 L22: 3.7811 REMARK 3 L33: 1.9603 L12: -1.2778 REMARK 3 L13: -0.8883 L23: 0.7760 REMARK 3 S TENSOR REMARK 3 S11: 0.1050 S12: 0.0316 S13: 0.2766 REMARK 3 S21: -0.0069 S22: -0.0429 S23: -0.1020 REMARK 3 S31: -0.1178 S32: 0.2192 S33: -0.0480 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.7834 11.8876 16.6141 REMARK 3 T TENSOR REMARK 3 T11: 0.3304 T22: 0.4008 REMARK 3 T33: 0.2992 T12: 0.1129 REMARK 3 T13: -0.0203 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.0109 L22: 1.3208 REMARK 3 L33: 2.5829 L12: -0.1092 REMARK 3 L13: -0.4962 L23: 0.7788 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: -0.0127 S13: -0.1130 REMARK 3 S21: 0.0404 S22: 0.0849 S23: -0.0698 REMARK 3 S31: 0.1429 S32: 0.4174 S33: -0.0361 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6449 28.8635 34.5806 REMARK 3 T TENSOR REMARK 3 T11: 0.6292 T22: 0.5931 REMARK 3 T33: 0.4590 T12: 0.0180 REMARK 3 T13: 0.0210 T23: -0.2095 REMARK 3 L TENSOR REMARK 3 L11: 2.8838 L22: 6.3177 REMARK 3 L33: 3.5304 L12: 1.0303 REMARK 3 L13: -2.6084 L23: -1.1540 REMARK 3 S TENSOR REMARK 3 S11: 0.2956 S12: -0.3378 S13: 0.5370 REMARK 3 S21: 0.3222 S22: -0.2006 S23: 0.2451 REMARK 3 S31: -0.7969 S32: 0.0670 S33: -0.0609 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6PDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1000242150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : DOUBLE SI WITH SAGITTALY BENT REMARK 200 SECOND CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 1.11.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37141 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 45.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 1DSB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-35 % PEG MME 2000, 100-300 MM KBR, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.60700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.14750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.60700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.14750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 202 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 LYS A 189 REMARK 465 ALA B 1 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 LYS A 47 CD CE NZ REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 49 CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 118 CD CE NZ REMARK 470 LYS A 140 CD CE NZ REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CE NZ REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 164 CG CD OE1 NE2 REMARK 470 ASP B 167 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 166 O1 PGE A 202 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 30 CA - CB - SG ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 3 56.50 -117.02 REMARK 500 LYS A 7 -79.63 -97.34 REMARK 500 LYS A 158 -32.63 -131.22 REMARK 500 LYS B 7 -78.91 -102.42 REMARK 500 LYS B 98 -67.05 -98.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAV A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PBI RELATED DB: PDB REMARK 900 6PBI CONTAINS THE SAME PROTEIN COMPLEXED WITH MORPHOLINE 5 REMARK 900 RELATED ID: 6PD7 RELATED DB: PDB REMARK 900 6PD7 CONTAINS THE SAME PROTEIN COMPLEXED WITH MORPHOLINE CARBOXYLIC REMARK 900 ACID 4 REMARK 900 RELATED ID: 6PC9 RELATED DB: PDB REMARK 900 6PC9 CONTAINS THE SAME PROTEIN COMPLEXED WITH METHYLPIPERAZINONE 3 DBREF 6PDH A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 6PDH B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET OAV A 201 29 HET PGE A 202 10 HETNAM OAV 2-[4-(4-CYANO-3-METHYLPHENOXY)PHENYL]-N-ETHYL-N-[2-(1H- HETNAM 2 OAV PYRAZOL-1-YL)ETHYL]ACETAMIDE HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 OAV C23 H24 N4 O2 FORMUL 4 PGE C6 H14 O4 FORMUL 5 HOH *117(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 66 GLY A 83 1 18 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O TYR A 59 N GLU A 24 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O TYR B 59 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.09 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.12 CISPEP 1 VAL A 150 PRO A 151 0 -2.05 CISPEP 2 VAL B 150 PRO B 151 0 -2.57 SITE 1 AC1 8 HIS A 32 GLN A 35 VAL A 150 PRO A 151 SITE 2 AC1 8 PRO A 163 GLN A 164 PGE A 202 PHE B 63 SITE 1 AC2 9 HIS A 32 GLN A 164 MET A 166 THR A 168 SITE 2 AC2 9 OAV A 201 ASN B 62 PHE B 63 GLY B 65 SITE 3 AC2 9 GLY B 66 CRYST1 119.214 50.295 91.980 90.00 118.11 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008388 0.000000 0.004481 0.00000 SCALE2 0.000000 0.019883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012326 0.00000